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Zachary Szpiech, PhD

TitlePostdoctoral Scholar
SchoolUCSF School of Pharmacy
DepartmentBioengineering
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. White KA, Ruiz DG, Szpiech Z, Strauli NB, Hernandez RD, Jacobson MP, Barber DL. Cancer-associated arginine-to-histidine mutations confer a gain in pH sensing to mutant proteins. Sci Signal. 2017 Sep 05; 10(495). PMID: 28874603.
      View in: PubMed
    2. Szpiech Z, Strauli NB, White KA, Ruiz DG, Jacobson MP, Barber DL, Hernandez RD. Prominent features of the amino acid mutation landscape in cancer. PLoS One. 2017; 12(8):e0183273. PMID: 28837668.
      View in: PubMed
    3. Szpiech Z, Blant A, Pemberton TJ. GARLIC: Genomic Autozygosity Regions Likelihood-based Inference and Classification. Bioinformatics. 2017 Jul 01; 33(13):2059-2062. PMID: 28205676.
      View in: PubMed
    4. Shringarpure SS, Mathias RA, Hernandez RD, O'Connor TD, Szpiech Z, Torres R, De La Vega FM, Bustamante CD, Barnes KC, Taub MA. Using genotype array data to compare multi- and single-sample variant calls and improve variant call sets from deep coverage whole-genome sequencing data. Bioinformatics. 2017 Apr 15; 33(8):1147-1153. PMID: 28035032.
      View in: PubMed
    5. Nédélec Y, Sanz J, Baharian G, Szpiech Z, Pacis A, Dumaine A, Grenier JC, Freiman A, Sams AJ, Hebert S, Pagé Sabourin A, Luca F, Blekhman R, Hernandez RD, Pique-Regi R, Tung J, Yotova V, Barreiro LB. Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens. Cell. 2016 Oct 20; 167(3):657-669.e21. PMID: 27768889.
      View in: PubMed
    6. Szpiech Z, Hernandez RD. selscan: an efficient multithreaded program to perform EHH-based scans for positive selection. Mol Biol Evol. 2014 Oct; 31(10):2824-7. PMID: 25015648; PMCID: PMC4166924.
    7. Ryan CJ, Cimermancic P, Szpiech Z, Sali A, Hernandez RD, Krogan NJ. High-resolution network biology: connecting sequence with function. Nat Rev Genet. 2013 Dec; 14(12):865-79. PMID: 24197012; PMCID: PMC4023809.
    8. Szpiech Z, Xu J, Pemberton TJ, Peng W, Zöllner S, Rosenberg NA, Li JZ. Long runs of homozygosity are enriched for deleterious variation. Am J Hum Genet. 2013 Jul 11; 93(1):90-102. PMID: 23746547; PMCID: PMC3710769.
    9. Szpiech Z, Rosenberg NA. On the size distribution of private microsatellite alleles. Theor Popul Biol. 2011 Sep; 80(2):100-13. PMID: 21514313; PMCID: PMC3143247.
    10. Rosenberg NA, Huang L, Jewett EM, Szpiech Z, Jankovic I, Boehnke M. Genome-wide association studies in diverse populations. Nat Rev Genet. 2010 May; 11(5):356-66. PMID: 20395969; PMCID: PMC3079573.
    11. Wang C, Szpiech Z, Degnan JH, Jakobsson M, Pemberton TJ, Hardy JA, Singleton AB, Rosenberg NA. Comparing spatial maps of human population-genetic variation using Procrustes analysis. Stat Appl Genet Mol Biol. 2010; 9:Article 13. PMID: 20196748; PMCID: PMC2861313.
    12. Szpiech Z, Jakobsson M, Rosenberg NA. ADZE: a rarefaction approach for counting alleles private to combinations of populations. Bioinformatics. 2008 Nov 01; 24(21):2498-504. PMID: 18779233; PMCID: PMC2732282.
    13. Jakobsson M, Scholz SW, Scheet P, Gibbs JR, VanLiere JM, Fung HC, Szpiech Z, Degnan JH, Wang K, Guerreiro R, Bras JM, Schymick JC, Hernandez DG, Traynor BJ, Simon-Sanchez J, Matarin M, Britton A, van de Leemput J, Rafferty I, Bucan M, Cann HM, Hardy JA, Rosenberg NA, Singleton AB. Genotype, haplotype and copy-number variation in worldwide human populations. Nature. 2008 Feb 21; 451(7181):998-1003. PMID: 18288195.
      View in: PubMed
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