Beatrice Gini, PhD

Photo of Beatrice Gini, PhD
Title(s)Assistant Researcher, Dermatology
SchoolSchool of Medicine
Address513 Parnassus Avenue HSW, #1201H
San Francisco CA 94143
ORCID ORCID Icon0000-0001-6095-1500 Additional info
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    Dr. Beatrice Gini is a cancer biologist and translational researcher whose work focuses on understanding the molecular mechanisms underlying therapeutic response and resistance in cancer. Her research integrates functional genomics, single-cell technologies, lineage tracing, pharmacodynamic assays, and clinically relevant preclinical models to identify therapeutic vulnerabilities and advance precision oncology.

    Over the past 15 years, Dr. Gini has conducted research at the University of Verona, UCLA, the Ludwig Institute for Cancer Research at UC San Diego, and UCSF. She has contributed to studies published in Science, Nature Genetics, Cancer Cell, Clinical Cancer Research, PNAS, Molecular Cell, and Nature Reviews Cancer, advancing knowledge of tumor evolution, genomic instability, and targeted therapy resistance in glioblastoma and EGFR-mutant lung cancer.

    As first author, Dr. Gini recently demonstrated that CDK4 or CDK6 upregulation promotes DNA replication stress and genomic instability, driving resistance to EGFR-targeted therapy in lung cancer. This work provides a mechanistic rationale for biomarker-guided combination treatment with EGFR and CDK4/6 inhibitors.

    In her current role in the UCSF Department of Dermatology, Dr. Gini develops integrated pharmacodynamic assays to evaluate targeted therapies in uveal melanoma. By combining IP-One HTRF, pERK HTRF, Western blotting, CellTiter-Glo, and complementary molecular analyses, she investigates drug activity, signaling responses, and pharmacodynamic biomarkers to support preclinical therapeutic development.

    Dr. Gini is committed to collaborative and translational cancer research and enjoys mentoring students and early-career scientists in experimental design, cancer biology, and functional genomics.

    Collapse Biography 
    Collapse education and training
    University of Verona , ItalyPhD12/2010Neuroscience
    University of Verona, ItalyMS07/2006Biotechnology
    University of Verona , ItalyBS07/2004Biotechnology
    Cold Spring Harbor Laboratory, Cold Spring Harbor, NY07/2013Single Cell Analysis Course
    UCSF , San Francisco 12/2024Bio-computational Analyses Course
    Collapse awards and honors
    U.S. Government2015 EB-1A Extraordinary Ability in Science
    EU Commission2011  - 2013Marie Curie FP7-PEOPLE International Outgoing Fellowship
    University of Verona2008  - 2009 CooperInt International Award for Scientific Excellence

    Collapse Research 

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    Collapse publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. CDK4 or CDK6 upregulation induces DNA replication stress and genomic instability to cause EGFR targeted therapy resistance in lung cancer. eLife. 2026; RP111526(15). Beatrice GiniPhilippe GuiWei WuD Lucas KerrLisa TanDora BarbosaVictor OlivasPaul AllegakoenCarlos GomezPatrick R HallidaySarah ElmesVeronica SteriTurja ChakrabartiTrever G BivonaCollin M Blakely. . View Publication.
    2. Acquired resistance in cancer: towards targeted therapeutic strategies. Nat Rev Cancer. 2025 Aug; 25(8):613-633. Soragni A, Knudsen ES, O'Connor TN, Tognon CE, Tyner JW, Gini B, Kim D, Bivona TG, Zang X, Witkiewicz AK, Goodrich DW, Jiang D, Gammon ST, Willey CD, Boutros PC, Sandulache VC, Osman AA, Myers JN, Mehla K, Singh PK, Chan KS, Gao H, Marathe H, National Cancer Institute (NCI) Acquired Resistance to Therapy Network (ARTNet). PMID: 40461793; PMCID: PMC12307123.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansAnimals
    3. The role of APOBEC3B in lung tumor evolution and targeted cancer therapy resistance. Nat Genet. 2024 Jan; 56(1):60-73. Caswell DR, Gui P, Mayekar MK, Law EK, Pich O, Bailey C, Boumelha J, Kerr DL, Blakely CM, Manabe T, Martinez-Ruiz C, Bakker B, De Dios Palomino Villcas J, I Vokes N, Dietzen M, Angelova M, Gini B, Tamaki W, Allegakoen P, Wu W, Humpton TJ, Hill W, Tomaschko M, Lu WT, Haderk F, Al Bakir M, Nagano A, Gimeno-Valiente F, de Carné Trécesson S, Vendramin R, Barbè V, Mugabo M, Weeden CE, Rowan A, McCoach CE, Almeida B, Green M, Gomez C, Nanjo S, Barbosa D, Moore C, Przewrocka J, Black JRM, Grönroos E, Suarez-Bonnet A, Priestnall SL, Zverev C, Lighterness S, Cormack J, Olivas V, Cech L, Andrews T, Rule B, Jiao Y, Zhang X, Ashford P, Durfee C, Venkatesan S, Temiz NA, Tan L, Larson LK, Argyris PP, Brown WL, Yu EA, Rotow JK, Guha U, Roper N, Yu J, Vogel RI, Thomas NJ, Marra A, Selenica P, Yu H, Bakhoum SF, Chew SK, Reis-Filho JS, Jamal-Hanjani M, Vousden KH, McGranahan N, Van Allen EM, Kanu N, Harris RS, Downward J, Bivona TG, Swanton C. PMID: 38049664; PMCID: PMC10786726.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansAnimalsCells
    4. Impact of concurrent genomic alterations in epidermal growth factor receptor (EGFR)-mutated lung cancer. J Thorac Dis. 2020 May; 12(5):2883-2895. Gini B, Thomas N, Blakely CM. PMID: 32642201; PMCID: PMC7330397.
      View in: PubMed   Mentions: 18  
    5. Evolution and clinical impact of co-occurring genetic alterations in advanced-stage EGFR-mutant lung cancers. Nat Genet. 2017 Dec; 49(12):1693-1704. Blakely CM, Watkins TBK, Wu W, Gini B, Chabon JJ, McCoach CE, McGranahan N, Wilson GA, Birkbak NJ, Olivas VR, Rotow J, Maynard A, Wang V, Gubens MA, Banks KC, Lanman RB, Caulin AF, St John J, Cordero AR, Giannikopoulos P, Simmons AD, Mack PC, Gandara DR, Husain H, Doebele RC, Riess JW, Diehn M, Swanton C, Bivona TG. PMID: 29106415; PMCID: PMC5709185.
      View in: PubMed   Mentions: 306     Fields:    Translation:HumansCells
    6. mTORC2 Regulates Amino Acid Metabolism in Cancer by Phosphorylation of the Cystine-Glutamate Antiporter xCT. Mol Cell. 2017 Jul 06; 67(1):128-138.e7. Gu Y, Albuquerque CP, Braas D, Zhang W, Villa GR, Bi J, Ikegami S, Masui K, Gini B, Yang H, Gahman TC, Shiau AK, Cloughesy TF, Christofk HR, Zhou H, Guan KL, Mischel PS. PMID: 28648777; PMCID: PMC5521991.
      View in: PubMed   Mentions: 132     Fields:    Translation:HumansCells
    7. Inactivation of Capicua drives cancer metastasis. Nat Genet. 2017 01; 49(1):87-96. Okimoto RA, Breitenbuecher F, Olivas VR, Wu W, Gini B, Hofree M, Asthana S, Hrustanovic G, Flanagan J, Tulpule A, Blakely CM, Haringsma HJ, Simmons AD, Gowen K, Suh J, Miller VA, Ali S, Schuler M, Bivona TG. PMID: 27869830; PMCID: PMC5195898.
      View in: PubMed   Mentions: 93     Fields:    Translation:HumansAnimalsCells
    8. Single-Cell Phosphoproteomics Resolves Adaptive Signaling Dynamics and Informs Targeted Combination Therapy in Glioblastoma. Cancer Cell. 2016 Apr 11; 29(4):563-573. Wei W, Shin YS, Xue M, Matsutani T, Masui K, Yang H, Ikegami S, Gu Y, Herrmann K, Johnson D, Ding X, Hwang K, Kim J, Zhou J, Su Y, Li X, Bonetti B, Chopra R, James CD, Cavenee WK, Cloughesy TF, Mischel PS, Heath JR, Gini B. PMID: 27070703; PMCID: PMC4831071.
      View in: PubMed   Mentions: 84     Fields:    Translation:HumansAnimalsCells
    9. Compensatory glutamine metabolism promotes glioblastoma resistance to mTOR inhibitor treatment. J Clin Invest. 2015 Apr; 125(4):1591-602. Tanaka K, Sasayama T, Irino Y, Takata K, Nagashima H, Satoh N, Kyotani K, Mizowaki T, Imahori T, Ejima Y, Masui K, Gini B, Yang H, Hosoda K, Sasaki R, Mischel PS, Kohmura E. PMID: 25798620; PMCID: PMC4396477.
      View in: PubMed   Mentions: 143     Fields:    Translation:HumansAnimalsCells
    10. Greater than the sum of its parts: single-nucleus sequencing identifies convergent evolution of independent EGFR mutants in GBM. Cancer Discov. 2014 Aug; 4(8):876-8. Gini B, Mischel PS. PMID: 25092745; PMCID: PMC5521958.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    11. Targeted therapy resistance mediated by dynamic regulation of extrachromosomal mutant EGFR DNA. Science. 2014 Jan 03; 343(6166):72-6. Nathanson DA, Gini B, Mottahedeh J, Visnyei K, Koga T, Gomez G, Eskin A, Hwang K, Wang J, Masui K, Paucar A, Yang H, Ohashi M, Zhu S, Wykosky J, Reed R, Nelson SF, Cloughesy TF, James CD, Rao PN, Kornblum HI, Heath JR, Cavenee WK, Furnari FB, Mischel PS. PMID: 24310612; PMCID: PMC4049335.
      View in: PubMed   Mentions: 396     Fields:    Translation:HumansAnimalsCells
    12. mTOR complex 2 controls glycolytic metabolism in glioblastoma through FoxO acetylation and upregulation of c-Myc. Cell Metab. 2013 Nov 05; 18(5):726-39. Masui K, Tanaka K, Akhavan D, Babic I, Gini B, Matsutani T, Iwanami A, Liu F, Villa GR, Gu Y, Campos C, Zhu S, Yang H, Yong WH, Cloughesy TF, Mellinghoff IK, Cavenee WK, Shaw RJ, Mischel PS. PMID: 24140020; PMCID: PMC3840163.
      View in: PubMed   Mentions: 267     Fields:    Translation:HumansAnimalsCells
    13. The mTOR kinase inhibitors, CC214-1 and CC214-2, preferentially block the growth of EGFRvIII-activated glioblastomas. Clin Cancer Res. 2013 Oct 15; 19(20):5722-32. Gini B, Zanca C, Guo D, Matsutani T, Masui K, Ikegami S, Yang H, Nathanson D, Villa GR, Shackelford D, Zhu S, Tanaka K, Babic I, Akhavan D, Lin K, Assuncao A, Gu Y, Bonetti B, Mortensen DS, Xu S, Raymon HK, Cavenee WK, Furnari FB, James CD, Kroemer G, Heath JR, Hege K, Chopra R, Cloughesy TF, Mischel PS. PMID: 24030701; PMCID: PMC3815450.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansAnimalsCells
    14. EGFR mutation-induced alternative splicing of Max contributes to growth of glycolytic tumors in brain cancer. Cell Metab. 2013 Jun 04; 17(6):1000-1008. Babic I, Anderson ES, Tanaka K, Guo D, Masui K, Li B, Zhu S, Gu Y, Villa GR, Akhavan D, Nathanson D, Gini B, Mareninov S, Li R, Camacho CE, Kurdistani SK, Eskin A, Nelson SF, Yong WH, Cavenee WK, Cloughesy TF, Christofk HR, Black DL, Mischel PS. PMID: 23707073; PMCID: PMC3679227.
      View in: PubMed   Mentions: 107     Fields:    Translation:HumansAnimalsCells
    15. A tale of two approaches: complementary mechanisms of cytotoxic and targeted therapy resistance may inform next-generation cancer treatments. Carcinogenesis. 2013 Apr; 34(4):725-38. Masui K, Gini B, Wykosky J, Zanca C, Mischel PS, Furnari FB, Cavenee WK. PMID: 23455378; PMCID: PMC3616676.
      View in: PubMed   Mentions: 52     Fields:    Translation:Humans
    16. PML mediates glioblastoma resistance to mammalian target of rapamycin (mTOR)-targeted therapies. Proc Natl Acad Sci U S A. 2013 Mar 12; 110(11):4339-44. Iwanami A, Gini B, Zanca C, Matsutani T, Assuncao A, Nael A, Dang J, Yang H, Zhu S, Kohyama J, Kitabayashi I, Cavenee WK, Cloughesy TF, Furnari FB, Nakamura M, Toyama Y, Okano H, Mischel PS. PMID: 23440206; PMCID: PMC3600508.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansAnimalsCellsCTClinical Trials
    17. Longitudinal evaluation of MPIO-labeled stem cell biodistribution in glioblastoma using high resolution and contrast-enhanced MR imaging at 14.1 tesla. Neuro Oncol. 2012 Aug; 14(8):1050-61. Chaumeil MM, Gini B, Yang H, Iwanami A, Sukumar S, Ozawa T, Pieper RO, Mischel PS, James CD, Berger MS, Ronen SM. PMID: 22670012; PMCID: PMC3408258.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    18. An LXR agonist promotes glioblastoma cell death through inhibition of an EGFR/AKT/SREBP-1/LDLR-dependent pathway. Cancer Discov. 2011 Oct; 1(5):442-56. Guo D, Reinitz F, Youssef M, Hong C, Nathanson D, Akhavan D, Kuga D, Amzajerdi AN, Soto H, Zhu S, Babic I, Tanaka K, Dang J, Iwanami A, Gini B, Dejesus J, Lisiero DD, Huang TT, Prins RM, Wen PY, Robins HI, Prados MD, Deangelis LM, Mellinghoff IK, Mehta MP, James CD, Chakravarti A, Cloughesy TF, Tontonoz P, Mischel PS. PMID: 22059152; PMCID: PMC3207317.
      View in: PubMed   Mentions: 269     Fields:    Translation:HumansAnimalsCells
    19. Oncogenic EGFR signaling activates an mTORC2-NF-κB pathway that promotes chemotherapy resistance. Cancer Discov. 2011 Nov; 1(6):524-38. Tanaka K, Babic I, Nathanson D, Akhavan D, Guo D, Gini B, Dang J, Zhu S, Yang H, De Jesus J, Amzajerdi AN, Zhang Y, Dibble CC, Dan H, Rinkenbaugh A, Yong WH, Vinters HV, Gera JF, Cavenee WK, Cloughesy TF, Manning BD, Baldwin AS, Mischel PS. PMID: 22145100; PMCID: PMC3229221.
      View in: PubMed   Mentions: 179     Fields:    Translation:HumansCells
    20. Hashimoto encephalopathy and antibodies against dimethylargininase-1: a rare cause of cognitive decline in a pediatric Down's syndrome patient. Clin Neurol Neurosurg. 2011 Oct; 113(8):678-9. Helene V, Patrick V, Boel de P, Gini B, Bruno B, Rudy VC. PMID: 21570763.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    21. 2D immunomic approach for the study of IgG autoantibodies in the experimental model of multiple sclerosis. J Neuroimmunol. 2011 Mar; 232(1-2):63-7. Farinazzo A, Gini B, Milli A, Ruffini F, Marconi S, Turano E, Anghileri E, Barbieri F, Cecconi D, Furlan R, Bonetti B. PMID: 21093930.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    22. Adipose-derived mesenchymal stem cells ameliorate chronic experimental autoimmune encephalomyelitis. Stem Cells. 2009 Oct; 27(10):2624-35. Constantin G, Marconi S, Rossi B, Angiari S, Calderan L, Anghileri E, Gini B, Bach SD, Martinello M, Bifari F, Galiè M, Turano E, Budui S, Sbarbati A, Krampera M, Bonetti B. PMID: 19676124.
      View in: PubMed   Mentions: 158     Fields:    Translation:AnimalsCells
    23. Transketolase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase type I isoforms are specifically recognized by IgG autoantibodies in multiple sclerosis patients. Mol Cell Proteomics. 2008 Dec; 7(12):2337-49. Lovato L, Cianti R, Gini B, Marconi S, Bianchi L, Armini A, Anghileri E, Locatelli F, Paoletti F, Franciotta D, Bini L, Bonetti B. PMID: 18676363.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    24. Different content of chitin-like polysaccharides in multiple sclerosis and Alzheimer's disease brains. J Neuroimmunol. 2008 Jun 15; 197(1):70-3. Sotgiu S, Musumeci S, Marconi S, Gini B, Bonetti B. PMID: 18485490.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    25. Novel autoantigens recognized by CSF IgG from Hashimoto's encephalitis revealed by a proteomic approach. J Neuroimmunol. 2008 May 30; 196(1-2):153-8. Gini B, Lovato L, Laura L, Cianti R, Riccardo C, Cecotti L, Laura C, Marconi S, Anghileri E, Armini A, Alessandro A, Moretto G, Giuseppe M, Bini L, Luca B, Ferracci F, Franco F, Bonetti B, Bruno B. PMID: 18407358.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
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