Fernaldo Richtia Winnerdy, PhD

Title(s)Postdoctoral Scholar, Biochemistry and Biophysics
SchoolSchool of Medicine
Address600 16th Street
San Francisco
Phone415-476-3937
ORCID ORCID Icon0000-0002-5010-4719 Additional info
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    Nanyang Technological University, SingaporePhD02/2019Biophysics
    National University of Singapore, SingaporeBSc05/2014Physics

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Four-Layered Intramolecular Parallel G-Quadruplex with Non-Nucleotide Loops: An Ultra-Stable Self-Folded DNA Nano-Scaffold. ACS Nano. 2021 Dec 20. Devi G, Winnerdy FR, Ang JCY, Lim KW, Phan AT. PMID: 34927423.
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    2. Unprecedented hour-long residence time of a cation in a left-handed G-quadruplex. Chem Sci. 2021 Apr 26; 12(20):7151-7157. Winnerdy FR, Bakalar B, Das P, Heddi B, Marchand A, Rosu F, Gabelica V, Phan AT. PMID: 34123342; PMCID: PMC8153214.
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    3. Duplexes Formed by G4C2 Repeats Contain Alternate Slow- and Fast-Flipping G·G Base Pairs. Biochemistry. 2021 04 13; 60(14):1097-1107. Maity A, Winnerdy FR, Chen G, Phan AT. PMID: 33750098.
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    4. The biofilm matrix scaffold of Pseudomonas aeruginosa contains G-quadruplex extracellular DNA structures. NPJ Biofilms Microbiomes. 2021 03 19; 7(1):27. Seviour T, Winnerdy FR, Wong LL, Shi X, Mugunthan S, Foo YH, Castaing R, Adav SS, Subramoni S, Kohli GS, Shewan HM, Stokes JR, Rice SA, Phan AT, Kjelleberg S. PMID: 33741996; PMCID: PMC7979868.
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    5. A novel minimal motif for left-handed G-quadruplex formation. Chem Commun (Camb). 2021 Mar 09; 57(20):2527-2530. Das P, Winnerdy FR, Maity A, Mechulam Y, Phan AT. PMID: 33690751.
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    6. Bulges in left-handed G-quadruplexes. Nucleic Acids Res. 2021 02 22; 49(3):1724-1736. Das P, Ngo KH, Winnerdy FR, Maity A, Bakalar B, Mechulam Y, Schmitt E, Phan AT. PMID: 33503265; PMCID: PMC7897477.
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    7. Coexistence of two quadruplex-duplex hybrids in the PIM1 gene. Nucleic Acids Res. 2020 11 04; 48(19):11162-11171. Tan DJY, Winnerdy FR, Lim KW, Phan AT. PMID: 32976598; PMCID: PMC7641742.
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    8. Post-translational formation of strained cyclophanes in bacteria. Nat Chem. 2020 11; 12(11):1042-1053. Nguyen TQN, Tooh YW, Sugiyama R, Nguyen TPD, Purushothaman M, Leow LC, Hanif K, Yong RHS, Agatha I, Winnerdy FR, Gugger M, Phan AT, Morinaka BI. PMID: 32807886.
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    9. Guanine anchoring: a strategy for specific targeting of a G-quadruplex using short PNA, LNA and DNA molecules. Chem Commun (Camb). 2020 Jun 02; 56(44):5897-5900. Tan DJY, Das P, Winnerdy FR, Lim KW, Phan AT. PMID: 32338660.
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    10. Intra-locked G-quadruplex structures formed by irregular DNA G-rich motifs. Nucleic Acids Res. 2020 04 06; 48(6):3315-3327. Maity A, Winnerdy FR, Chang WD, Chen G, Phan AT. PMID: 32100003; PMCID: PMC7102960.
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    11. Extracellular protein isolation from the matrix of anammox biofilm using ionic liquid extraction. Appl Microbiol Biotechnol. 2020 Apr; 104(8):3643-3654. Wong LL, Natarajan G, Boleij M, Thi SS, Winnerdy FR, Mugunthan S, Lu Y, Lee JM, Lin Y, van Loosdrecht M, Law Y, Kjelleberg S, Seviour T. PMID: 32095864.
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    12. Cytosine epigenetic modification modulates the formation of an unprecedented G4 structure in the WNT1 promoter. Nucleic Acids Res. 2020 02 20; 48(3):1120-1130. Wang ZF, Li MH, Chu IT, Winnerdy FR, Phan AT, Chang TC. PMID: 31912153; PMCID: PMC7026657.
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    13. Solution Structures of a G-Quadruplex Bound to Linear- and Cyclic-Dinucleotides. J Am Chem Soc. 2019 11 13; 141(45):18038-18047. Winnerdy FR, Das P, Heddi B, Phan AT. PMID: 31661272.
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    14. NMR solution and X-ray crystal structures of a DNA molecule containing both right- and left-handed parallel-stranded G-quadruplexes. Nucleic Acids Res. 2019 09 05; 47(15):8272-8281. Winnerdy FR, Bakalar B, Maity A, Vandana JJ, Mechulam Y, Schmitt E, Phan AT. PMID: 31216034; PMCID: PMC6735952.
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    15. An Unprecedented Knot-like G-Quadruplex Peripheral Motif. Angew Chem Int Ed Engl. 2019 09 23; 58(39):13834-13839. Truong THA, Winnerdy FR, Phan AT. PMID: 31317601.
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    16. Bright G-Quadruplex Nanostructures Functionalized with Porphyrin Lanterns. J Am Chem Soc. 2019 08 14; 141(32):12582-12591. Pathak P, Yao W, Hook KD, Vik R, Winnerdy FR, Brown JQ, Gibb BC, Pursell ZF, Phan AT, Jayawickramarajah J. PMID: 31322869; PMCID: PMC8170694.
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    17. Structure of a (3+1) hybrid G-quadruplex in the PARP1 promoter. Nucleic Acids Res. 2019 02 20; 47(3):1564-1572. Sengar A, Vandana JJ, Chambers VS, Di Antonio M, Winnerdy FR, Balasubramanian S, Phan AT. PMID: 30551210; PMCID: PMC6379715.
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    18. A Catalytic and Selective Scissoring Molecular Tool for Quadruplex Nucleic Acids. J Am Chem Soc. 2018 11 07; 140(44):14528-14532. Nadai M, Doria F, Scalabrin M, Pirota V, Grande V, Bergamaschi G, Amendola V, Winnerdy FR, Phan AT, Richter SN, Freccero M. PMID: 30351011; PMCID: PMC6242190.
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    19. Analysis of Interactions between Telomeric i-Motif DNA and a Cyclic Tetraoxazole Compound. Chembiochem. 2018 11 02; 19(21):2268-2272. Sedghi Masoud S, Yamaoki Y, Ma Y, Marchand A, Winnerdy FR, Gabelica V, Phan AT, Katahira M, Nagasawa K. PMID: 30160816.
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    20. Rotation of Guanine Amino Groups in G-Quadruplexes: A Probe for Local Structure and Ligand Binding. Biophys J. 2017 Aug 22; 113(4):775-784. Adrian M, Winnerdy FR, Heddi B, Phan AT. PMID: 28834714; PMCID: PMC5567425.
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