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Prashant Bhat, MD, PhD

Photo of Prashant Bhat, MD, PhD
Title(s)Resident Physician, Pathology
SchoolSchool of Medicine
Address654 Minnesota Street
San Francisco CA 94107
ORCID ORCID Icon0000-0003-3832-4871 Additional info
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    Collapse Overview 
    Collapse overview
    Dr. Prashant Bhat, M.D., Ph.D., is a resident physician in the Department of Pathology and Laboratory Medicine at UCSF, where he is part of the Pathology Physician Scientist Program (PSP), which prepares trainees for independent careers as physician-scientists. He earned his B.A. in Molecular and Cell Biology from UC Berkeley in 2014, where he trained with Professor Jennifer Doudna, and completed his Ph.D. in Biology at Caltech in 2023 under the mentorship of Professor Mitchell Guttman, followed by his M.D. from UCLA in 2026.

    As a resident, Dr. Bhat is rotating through the core disciplines of clinical pathology, including transfusion medicine, hematopathology, clinical chemistry, microbiology, and molecular genetic pathology. He is particularly interested in the integrated use of flow cytometry, molecular pathology, histopathology, and immunohistochemistry (IHC) to diagnose both malignant and non-malignant disease, with the goal of pursuing fellowship training and a career bridging diagnostic pathology and research.

    His doctoral research focused on developing genomic methods, including SPRITE, for studying 3D genome architecture, leading to the discovery that genome organization around nuclear speckles drives mRNA splicing efficiency. Building on this foundation, his current research applies SPRITE and long-read sequencing approaches to primary human cells, with the goal of mapping higher-order genome organization directly in patient-derived material. A central aim of his research program is to connect these molecular findings to histopathology — investigating how morphological abnormalities observed under the microscope correspond to restructuring of DNA, RNA, and protein architecture, in order to better understand the molecular basis of disease. To pursue this work, he collaborates with colleagues across Pathology and Laboratory Medicine, the Gladstone Institutes, the Arc Institute, and the Department of Medicine's Hematology/Oncology division, bringing together clinical and molecular perspectives with the goal of better understanding disease mechanisms and ultimately improving diagnosis and care for patients.

    Collapse Biography 
    Collapse education and training
    University of California, San FranciscoResidencyClinical Pathology
    University of California, Los AngelesM.D.06/2026Doctor of Medicine
    California Institute of TechnologyPh.D.06/2023Biology
    University of California, BerkeleyB.A.05/2014Molecular and Cell Biology - Biochemistry
    Collapse awards and honors
    UCLA2026Emil Bogen Research Prize
    Caltech2023Caltech Everhart Distinguished Lectureship
    UC Berkeley2014Outstanding Scholar Award

    Collapse Research 
    Collapse research activities and funding
    American Federation of Aging Research ScholarshipJan 1, 2023 - Dec 31, 2023
    Josephine De Kármán Dissertation FellowshipJan 1, 2021 - Dec 31, 2021
    Chen Graduate Innovator Grant (Caltech)Jan 1, 2020 - Dec 31, 2020
    NIH Ruth Kirschstein National Research Award F30Jan 1, 2019 - Dec 31, 2021

    Collapse Featured Content 

    Collapse Bibliographic 
    Collapse publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. An integrated view of the structure and function of the human 4D nucleome. Nature. 2026 01; 649(8097):759-776. Dekker J, Oksuz BA, Zhang Y, Wang Y, Minsk MK, Kuang S, Yang L, Gibcus JH, Krietenstein N, Rando OJ, Xu J, Janssens DH, Henikoff S, Kukalev A, Andréa W, Winick-Ng W, Kempfer R, Pombo A, Yu M, Kumar P, Zhang L, Belmont AS, Sasaki T, van Schaik T, Brueckner L, Peric-Hupkes D, van Steensel B, Wang P, Chai H, Kim M, Ruan Y, Zhang R, Quinodoz SA, Bhat P, Guttman M, Zhao W, Chien S, Liu Y, Venev SV, Plewczynski D, Azcarate II, Szabó D, Thieme CJ, Szczepinska T, Chilinski M, Sengupta K, Conte M, Esposito A, Abraham A, Zhang R, Wang Y, Wen X, Wu Q, Yang Y, Liu J, Boninsegna L, Yildirim A, Zhan Y, Chiariello AM, Bianco S, Lee L, Hu M, Li Y, Barnett RJ, Cook AL, Emerson DJ, Marchal C, Zhao P, Park PJ, Alver BH, Schroeder AJ, Navelkar R, Bakker C, Ronchetti W, Ehmsen S, Veit AD, Gehlenborg N, Wang T, Li D, Wang X, Nicodemi M, Ren B, Zhong S, Phillips-Cremins JE, Gilbert DM, Pollard KS, Alber F, Ma J, Noble WS, Yue F. PMID: 41407856; PMCID: PMC12804090.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    2. Mapping and engineering RNA-driven architecture of the multiphase nucleolus. Nature. 2025 Aug; 644(8076):557-566. Quinodoz SA, Jiang L, Abu-Alfa AA, Comi TJ, Zhao H, Yu Q, Wiesner LW, Botello JF, Donlic A, Soehalim E, Bhat P, Zorbas C, Wacheul L, Košmrlj A, Lafontaine DLJ, Klinge S, Brangwynne CP. PMID: 40604277; PMCID: PMC12350172.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    3. Spatial multi-omics reveals cell-type-specific nuclear compartments. Nature. 2025 May; 641(8064):1037-1047. Takei Y, Yang Y, White J, Goronzy IN, Yun J, Prasad M, Ombelets LJ, Schindler S, Bhat P, Guttman M, Cai L. PMID: 40205045.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    4. Genome organization around nuclear speckles drives mRNA splicing efficiency. Nature. 2024 May; 629(8014):1165-1173. Bhat P, Chow A, Emert B, Ettlin O, Quinodoz SA, Strehle M, Takei Y, Burr A, Goronzy IN, Chen AW, Huang W, Ferrer JLM, Soehalim E, Goh ST, Chari T, Sullivan DK, Blanco MR, Guttman M. PMID: 38720076; PMCID: PMC11164319.
      View in: PubMed   Mentions: 68     Fields:    Translation:HumansAnimalsCells
    5. Simultaneous mapping of 3D structure and nascent RNAs argues against nuclear compartments that preclude transcription. Cell Rep. 2022 Nov 29; 41(9):111730. Goronzy IN, Quinodoz SA, Jachowicz JW, Ollikainen N, Bhat P, Guttman M. PMID: 36450242; PMCID: PMC9793828.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    6. Interplay Between Duration of Androgen Deprivation Therapy and External Beam Radiotherapy With or Without a Brachytherapy Boost for Optimal Treatment of High-risk Prostate Cancer: A Patient-Level Data Analysis of 3 Cohorts. JAMA Oncol. 2022 Mar 01; 8(3):e216871. Kishan AU, Steigler A, Denham JW, Zapatero A, Guerrero A, Joseph D, Maldonado X, Wong JK, Stish BJ, Dess RT, Pilar A, Reddy C, Wedde TB, Lilleby WA, Fiano R, Merrick GS, Stock RG, Demanes DJ, Moran BJ, Tran PT, Martin S, Martinez-Monge R, Krauss DJ, Abu-Isa EI, Pisansky TM, Choo CR, Song DY, Greco S, Deville C, McNutt T, DeWeese TL, Ross AE, Ciezki JP, Tilki D, Karnes RJ, Tosoian JJ, Nickols NG, Bhat P, Shabsovich D, Juarez JE, Jiang T, Ma TM, Xiang M, Philipson R, Chang A, Kupelian PA, Rettig MB, Feng FY, Berlin A, Tward JD, Davis BJ, Reiter RE, Steinberg ML, Elashoff D, Boutros PC, Horwitz EM, Tendulkar RD, Spratt DE, Romero T. PMID: 35050303; PMCID: PMC8778608.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    7. The Potential of CRISPR-Guided Therapies in the Dermatology Clinic. JID Innov. 2022 Mar; 2(2):100103. Bhat P, Garibyan L. PMID: 35265937; PMCID: PMC8899042.
      View in: PubMed   Mentions: 5  
    8. SPRITE: a genome-wide method for mapping higher-order 3D interactions in the nucleus using combinatorial split-and-pool barcoding. Nat Protoc. 2022 Jan; 17(1):36-75. Quinodoz SA, Bhat P, Chovanec P, Jachowicz JW, Ollikainen N, Detmar E, Soehalim E, Guttman M. PMID: 35013617; PMCID: PMC12145137.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansAnimalsCells
    9. RNA promotes the formation of spatial compartments in the nucleus. Cell. 2021 11 11; 184(23):5775-5790.e30. Quinodoz SA, Jachowicz JW, Bhat P, Ollikainen N, Banerjee AK, Goronzy IN, Blanco MR, Chovanec P, Chow A, Markaki Y, Thai J, Plath K, Guttman M. PMID: 34739832; PMCID: PMC9115877.
      View in: PubMed   Mentions: 213     Fields:    Translation:HumansAnimalsCells
    10. Nuclear compartmentalization as a mechanism of quantitative control of gene expression. Nat Rev Mol Cell Biol. 2021 Oct; 22(10):653-670. Bhat P, Honson D, Guttman M. PMID: 34341548; PMCID: PMC12145136.
      View in: PubMed   Mentions: 130     Fields:    Translation:HumansAnimalsCells
    11. Comparison of Multimodal Therapies and Outcomes Among Patients With High-Risk Prostate Cancer With Adverse Clinicopathologic Features. JAMA Netw Open. 2021 07 01; 4(7):e2115312. Kishan AU, Karnes RJ, Romero T, Wong JK, Motterle G, Tosoian JJ, Trock BJ, Klein EA, Stish BJ, Dess RT, Spratt DE, Pilar A, Reddy C, Levin-Epstein R, Wedde TB, Lilleby WA, Fiano R, Merrick GS, Stock RG, Demanes DJ, Moran BJ, Braccioforte M, Huland H, Tran PT, Martin S, Martínez-Monge R, Krauss DJ, Abu-Isa EI, Alam R, Schwen Z, Chang AJ, Pisansky TM, Choo R, Song DY, Greco S, Deville C, McNutt T, DeWeese TL, Ross AE, Ciezki JP, Boutros PC, Nickols NG, Bhat P, Shabsovich D, Juarez JE, Chong N, Kupelian PA, D'Amico AV, Rettig MB, Berlin A, Tward JD, Davis BJ, Reiter RE, Steinberg ML, Elashoff D, Horwitz EM, Tendulkar RD, Tilki D. PMID: 34196715; PMCID: PMC8251338.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    12. Patterns of Clinical Progression in Radiorecurrent High-risk Prostate Cancer. Eur Urol. 2021 08; 80(2):142-146. Philipson RG, Romero T, Wong JK, Stish BJ, Dess RT, Spratt DE, Pilar A, Reddy C, Wedde TB, Lilleby WA, Fiano R, Merrick GS, Stock RG, Demanes DJ, Moran BJ, Braccioforte M, Tran PT, Martin S, Martinez-Monge R, Krauss DJ, Abu-Isa EI, Valle L, Chong N, Pisansky TM, Choo CR, Song DY, Greco S, Deville C, McNutt T, DeWeese TL, Ross AE, Ciezki JP, Tilki D, Karnes RJ, Klein EA, Tosoian JJ, Boutros PC, Nickols NG, Bhat P, Shabsovich D, Juarez JE, Kupelian PA, Rettig MB, Berlin A, Tward JD, Davis BJ, Reiter RE, Steinberg ML, Elashoff D, Horwitz EM, Tendulkar RD, Kishan AU. PMID: 33985797; PMCID: PMC10262978.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    13. SARS-CoV-2 Disrupts Splicing, Translation, and Protein Trafficking to Suppress Host Defenses. Cell. 2020 11 25; 183(5):1325-1339.e21. Banerjee AK, Blanco MR, Bruce EA, Honson DD, Chen LM, Chow A, Bhat P, Ollikainen N, Quinodoz SA, Loney C, Thai J, Miller ZD, Lin AE, Schmidt MM, Stewart DG, Goldfarb D, De Lorenzo G, Rihn SJ, Voorhees RM, Botten JW, Majumdar D, Guttman M. PMID: 33080218; PMCID: PMC7543886.
      View in: PubMed   Mentions: 360     Fields:    Translation:HumansAnimalsCells
    14. Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus. Cell. 2018 07 26; 174(3):744-757.e24. Quinodoz SA, Ollikainen N, Tabak B, Palla A, Schmidt JM, Detmar E, Lai MM, Shishkin AA, Bhat P, Takei Y, Trinh V, Aznauryan E, Russell P, Cheng C, Jovanovic M, Chow A, Cai L, McDonel P, Garber M, Guttman M. PMID: 29887377; PMCID: PMC6548320.
      View in: PubMed   Mentions: 491     Fields:    Translation:HumansAnimalsCells
    15. Surveillance and Processing of Foreign DNA by the Escherichia coli CRISPR-Cas System. Cell. 2015 Nov 05; 163(4):854-65. Redding S, Sternberg SH, Marshall M, Gibb B, Bhat P, Guegler CK, Wiedenheft B, Doudna JA, Greene EC. PMID: 26522594; PMCID: PMC4636941.
      View in: PubMed   Mentions: 121     Fields:    Translation:Cells
    16. CasA mediates Cas3-catalyzed target degradation during CRISPR RNA-guided interference. Proc Natl Acad Sci U S A. 2014 May 06; 111(18):6618-23. Hochstrasser ML, Taylor DW, Bhat P, Guegler CK, Sternberg SH, Nogales E, Doudna JA. PMID: 24748111; PMCID: PMC4020112.
      View in: PubMed   Mentions: 120     Fields:    Translation:Cells
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