Jesse Alexander, PhD, MD

Title(s)Assistant Professor, Radiation Oncology
SchoolSchool of Medicine
Address1600 Divisadero, #H1023
San Francisco CA 94115
Phone415-353-9883
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    My research interests lie in the area of medical informatics and focus on electronic health records. In particular, I use cancer and radiation therapy as a lens to examine aspects of electronic health records. In recent work, I have developed a technique to identify side effects of procedures in unstructured electronic health record data, described a vulnerability in the de-identification of electronic health records, and examined the benefits of and disparities in the use of MyChart messages in radiation oncology patients. Future work will involve the application of the abovementioned technique to understand side effects in a national cohort of prostate cancer patients and a deeper investigation into the benefits of MyChart messaging.

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Nonspecific deidentification of date-like text in deidentified clinical notes enables reidentification of dates. Journal of the Medical Informatics Association. 2022; 7(29):1967-1971. Jes Alexander, Alexis Beatty. View Publication.
    2. Relative Incidence of Emergency Department Visits After Treatment for Prostate Cancer With Radiation Therapy or Radical Prostatectomy. Practical Radiation Oncology. 2022; 12(5):e415-e422. Jes Alexander, Alexis Beatty, Osama Mohamad, I-Chow Joe Hsu. View Publication.
    3. Multimodal single-cell analysis reveals distinct radioresistant stem-like and progenitor cell populations in murine glioma. Glia. 2020 12; 68(12):2486-2502. Alexander J, LaPlant QC, Pattwell SS, Szulzewsky F, Cimino PJ, Caruso FP, Pugliese P, Chen Z, Chardon F, Hill AJ, Spurrell C, Ahrendsen D, Pietras A, Starita LM, Hambardzumyan D, Iavarone A, Shendure J, Holland EC. PMID: 32621641; PMCID: PMC7586969.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    4. Concurrent genome and epigenome editing by CRISPR-mediated sequence replacement. BMC Biol. 2019 11 18; 17(1):90. Alexander J, Findlay GM, Kircher M, Shendure J. PMID: 31739790; PMCID: PMC6862751.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    5. Increased HOXA5 expression provides a selective advantage for gain of whole chromosome 7 in IDH wild-type glioblastoma. Genes Dev. 2018 04 01; 32(7-8):512-523. Cimino PJ, Kim Y, Wu HJ, Alexander J, Wirsching HG, Szulzewsky F, Pitter K, Ozawa T, Wang J, Vazquez J, Arora S, Rabadan R, Levine R, Michor F, Holland EC. PMID: 29632085; PMCID: PMC5959235.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansAnimalsCells
    6. Pre-plan parameters predict post-implant D90 ≥ 140 Gy for (125)I permanent prostate implants. J Contemp Brachytherapy. 2014 Jun; 6(2):143-53. Alexander J, Weinberg V, Gottschalk AR, Hsu IC, Shinohara K, Roach M. PMID: 25097554; PMCID: PMC4105644.
      View in: PubMed   Mentions: 2  
    7. Spatial exclusivity combined with positive and negative selection of phosphorylation motifs is the basis for context-dependent mitotic signaling. Sci Signal. 2011 Jun 28; 4(179):ra42. Alexander J, Lim D, Joughin BA, Hegemann B, Hutchins JR, Ehrenberger T, Ivins F, Sessa F, Hudecz O, Nigg EA, Fry AM, Musacchio A, Stukenberg PT, Mechtler K, Peters JM, Smerdon SJ, Yaffe MB. PMID: 21712545; PMCID: PMC3939359.
      View in: PubMed   Mentions: 102     Fields:    Translation:HumansAnimalsCells
    8. Linear motif atlas for phosphorylation-dependent signaling. Sci Signal. 2008 Sep 02; 1(35):ra2. Miller ML, Jensen LJ, Diella F, Jørgensen C, Tinti M, Li L, Hsiung M, Parker SA, Bordeaux J, Sicheritz-Ponten T, Olhovsky M, Pasculescu A, Alexander J, Knapp S, Blom N, Bork P, Li S, Cesareni G, Pawson T, Turk BE, Yaffe MB, Brunak S, Linding R. PMID: 18765831; PMCID: PMC6215708.
      View in: PubMed   Mentions: 231     Fields:    Translation:HumansAnimalsCells
    9. The NDR/LATS family kinase Cbk1 directly controls transcriptional asymmetry. PLoS Biol. 2008 Aug 19; 6(8):e203. Mazanka E, Alexander J, Yeh BJ, Charoenpong P, Lowery DM, Yaffe M, Weiss EL. PMID: 18715118; PMCID: PMC2517623.
      View in: PubMed   Mentions: 67     Fields:    Translation:AnimalsCells
    10. Proteomic screen defines the Polo-box domain interactome and identifies Rock2 as a Plk1 substrate. EMBO J. 2007 May 02; 26(9):2262-73. Lowery DM, Clauser KR, Hjerrild M, Lim D, Alexander J, Kishi K, Ong SE, Gammeltoft S, Carr SA, Yaffe MB. PMID: 17446864; PMCID: PMC1864981.
      View in: PubMed   Mentions: 126     Fields:    Translation:HumansCells
    11. Diagnostic markers that distinguish colon and ovarian adenocarcinomas: identification by genomic, proteomic, and tissue array profiling. Cancer Res. 2003 Sep 01; 63(17):5243-50. Nishizuka S, Chen ST, Gwadry FG, Alexander J, Major SM, Scherf U, Reinhold WC, Waltham M, Charboneau L, Young L, Bussey KJ, Kim S, Lababidi S, Lee JK, Pittaluga S, Scudiero DA, Sausville EA, Munson PJ, Petricoin EF, Liotta LA, Hewitt SM, Raffeld M, Weinstein JN. PMID: 14500354.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansCells
    12. Apoptotic susceptibility of cancer cells selected for camptothecin resistance: gene expression profiling, functional analysis, and molecular interaction mapping. Cancer Res. 2003 Mar 01; 63(5):1000-11. Reinhold WC, Kouros-Mehr H, Kohn KW, Maunakea AK, Lababidi S, Roschke A, Stover K, Alexander J, Pantazis P, Miller L, Liu E, Kirsch IR, Urasaki Y, Pommier Y, Weinstein JN. PMID: 12615715.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
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