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Shola Olagoke, PhD

Title(s)Postdoctoral Scholar, Pediatrics
SchoolSchool of Medicine
Address550 16th Street, #4842
San Francisco CA 94158
PronounsHe/Him/His
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Phylogenetic diversity, functional pathways, and network interactions of ocular chlamydia-like organisms (CLOs) in trachoma-endemic Ethiopia. mBio. 2026 May 13; 17(5):e0053426. Olagoke O, Zheng X, Chung S, Mengistie HD, Asfaha K, Read TD, Dean D. PMID: 42023843; PMCID: PMC13170232.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    2. CtGAP 2.0: enhanced genome assembly, strain resolution, and phylogenomics for Chlamydia trachomatis. Microbiol Resour Announc. 2026 Mar 12; 15(3):e0147025. Olagoke O, Read TD, Dean D. PMID: 41733372; PMCID: PMC12981087.
      View in: PubMed   Mentions:
    3. Azithromycin alters the microbiome composition, function and resistome in women with Chlamydia trachomatis infections. NPJ Biofilms Microbiomes. 2025 Dec 13; 11(1):235. Bommana S, Olagoke O, Hu YJ, Wang R, Kama M, Dehdashti M, Kodimerla R, Read TD, Dean D. PMID: 41390780; PMCID: PMC12738766.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    4. Transcriptional profiling of Chlamydia trachomatis and its host in an ex vivo endocervical primary cell culture system using dual RNA sequencing. Front Cell Infect Microbiol. 2025; 15:1613922. Olagoke O, Chittaranjan S, Dean D. PMID: 40599652; PMCID: PMC12209195.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    5. Effect of Azithromycin treatment on the microbial composition, functional dynamics and resistomes of endocervical, vaginal and rectal microbiomes of women in Fiji with Chlamydia trachomatis infection. bioRxiv. 2025 Apr 10. Bommana S, Olagoke S, Hu Y, Wang R, Kama M, Dehdashti M, Kodimerla R, Read T, Dean D. PMID: 40236150; PMCID: PMC11996479.
      View in: PubMed   Mentions:
    6. Evaluating the feasibility, sensitivity, and specificity of next-generation molecular methods for pleural infection diagnosis. Microbiol Spectr. 2025 Feb 04; 13(2):e0196024. Bell PT, Baird T, Goddard J, Olagoke OS, Burke A, Subedi S, Davey TR, Anderson J, Sarovich DS, Price EP. PMID: 39812555; PMCID: PMC11792517.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    7. Whole-genome automated assembly pipeline for Chlamydia trachomatis strains from reference, in vitro and clinical samples using the integrated CtGAP pipeline. NAR Genom Bioinform. 2025 03; 7(1):lqae187. Olagoke O, Aziz A, Zhu LH, Read TD, Dean D. PMID: 39781511; PMCID: PMC11704784.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    8. Rapid fluoroquinolone resistance detection in Pseudomonas aeruginosa using mismatch amplification mutation assay-based real-time PCR. J Med Microbiol. 2022 Oct; 71(10). Madden DE, McCarthy KL, Bell SC, Olagoke O, Baird T, Neill J, Ramsay KA, Kidd TJ, Stewart AG, Subedi S, Choong K, Fraser TA, Sarovich DS, Price EP. PMID: 36301593.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    9. Express Yourself: Quantitative Real-Time PCR Assays for Rapid Chromosomal Antimicrobial Resistance Detection in Pseudomonas aeruginosa. Antimicrob Agents Chemother. 2022 May 17; 66(5):e0020422. Madden DE, Olagoke O, Baird T, Neill J, Ramsay KA, Fraser TA, Bell SC, Sarovich DS, Price EP. PMID: 35467369; PMCID: PMC9112894.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    10. Genomic diversity and antimicrobial resistance of Prevotella species isolated from chronic lung disease airways. Microb Genom. 2022 Feb; 8(2). Webb KA, Olagoke O, Baird T, Neill J, Pham A, Wells TJ, Ramsay KA, Bell SC, Sarovich DS, Price EP. PMID: 35113778; PMCID: PMC8942031.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    11. Koala Retrovirus in Northern Australia Shows a Mixture of Stable Endogenization and Exogenous Lineage Diversification within Fragmented Koala Populations. J Virol. 2021 Mar 10; 95(7). Quigley BL, Melzer A, Ellis W, Tzipori G, Nilsson K, Olagoke O, Robbins A, Hanger J, Timms P. PMID: 33472936; PMCID: PMC8092702.
      View in: PubMed   Mentions: 6     Fields:    
    12. Koalas vaccinated against Koala retrovirus respond by producing increased levels of interferon-gamma. Virol J. 2020 Oct 31; 17(1):168. Olagoke O, Quigley BL, Timms P. PMID: 33129323; PMCID: PMC7602773.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    13. Therapeutic vaccination of koalas harbouring endogenous koala retrovirus (KoRV) improves antibody responses and reduces circulating viral load. NPJ Vaccines. 2020; 5:60. Olagoke O, Quigley BL, Hemmatzadeh F, Tzipori G, Timms P. PMID: 32699650; PMCID: PMC7367292.
      View in: PubMed   Mentions: 7  
    14. Vaccination of koalas during antibiotic treatment for Chlamydia-induced cystitis induces an improved antibody response to Chlamydia pecorum. Sci Rep. 2020 Jun 23; 10(1):10152. Phillips S, Quigley BL, Olagoke O, Booth R, Pyne M, Timms P. PMID: 32576914; PMCID: PMC7311432.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCellsPHPublic Health
    15. Changes in Endogenous and Exogenous Koala Retrovirus Subtype Expression over Time Reflect Koala Health Outcomes. J Virol. 2019 Sep 15; 93(18). Quigley BL, Phillips S, Olagoke O, Robbins A, Hanger J, Timms P. PMID: 31243137; PMCID: PMC6714790.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    16. Prevalence and clinical significance of koala retrovirus in two South Australian koala (Phascolarctos cinereus) populations. J Med Microbiol. 2019 Jul; 68(7):1072-1080. Fabijan J, Miller D, Olagoke O, Woolford L, Boardman W, Timms P, Polkinghorne A, Simmons G, Hemmatzadeh F, Trott DJ, Speight KN. PMID: 31162024.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
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