Raul Andino-Pavlovsky, PhD

Title(s)Professor, Microbiology and Immunology
SchoolSchool of Medicine
Address600 16th Street, #S572E
San Francisco CA 94158
Phone415-514-4404
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Now you see me, now you don't: What and how viral RNAs are detected by cytoplasmic pattern-recognition receptors. Mol Cell. 2025 Apr 17; 85(8):1482-1483. Andino R, Darling D. PMID: 40250409.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    2. A tradeoff between enterovirus A71 particle stability and cell entry. Nat Commun. 2023 11 17; 14(1):7450. Catching A, Te Yeh M, Bianco S, Capponi S, Andino R. PMID: 37978288; PMCID: PMC10656440.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    3. Genetic stabilization of attenuated oral vaccines against poliovirus types 1 and 3. Nature. 2023 07; 619(7968):135-142. Yeh MT, Smith M, Carlyle S, Konopka-Anstadt JL, Burns CC, Konz J, Andino R, Macadam A. PMID: 37316671; PMCID: PMC10322712.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCellsPHPublic Health
    4. Reconsidering life history theory amid infectious diseases. Trends Ecol Evol. 2023 08; 38(8):699-700. Lidsky PV, Yuan J, Andino R. PMID: 37236881.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    5. Fluorogenic reporter enables identification of compounds that inhibit SARS-CoV-2. Nat Microbiol. 2023 01; 8(1):121-134. Yang J, Xiao Y, Lidsky PV, Wu CT, Bonser LR, Peng S, Garcia-Knight MA, Tassetto M, Chung CI, Li X, Nakayama T, Lee IT, Nayak JV, Ghias K, Hargett KL, Shoichet BK, Erle DJ, Jackson PK, Andino R, Shu X. PMID: 36604514; PMCID: PMC9831272.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    6. SARS-CoV-2 replication in airway epithelia requires motile cilia and microvillar reprogramming. Cell. 2023 01 05; 186(1):112-130.e20. Wu CT, Lidsky PV, Xiao Y, Cheng R, Lee IT, Nakayama T, Jiang S, He W, Demeter J, Knight MG, Turn RE, Rojas-Hernandez LS, Ye C, Chiem K, Shon J, Martinez-Sobrido L, Bertozzi CR, Nolan GP, Nayak JV, Milla C, Andino R, Jackson PK. PMID: 36580912; PMCID: PMC9715480.
      View in: PubMed   Mentions: 91     Fields:    Translation:HumansCells
    7. Is Aging an Inevitable Characteristic of Organic Life or an Evolutionary Adaptation? Biochemistry (Mosc). 2022 Dec; 87(12):1413-1445. Lidsky PV, Yuan J, Rulison JM, Andino-Pavlovsky R. PMID: 36717438; PMCID: PMC9839256.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    8. Could aging evolve as a pathogen control strategy? Trends Ecol Evol. 2022 12; 37(12):1046-1057. Lidsky PV, Andino R. PMID: 36096982.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    9. A defective viral genome strategy elicits broad protective immunity against respiratory viruses. Cell. 2021 12 09; 184(25):6037-6051.e14. Xiao Y, Lidsky PV, Shirogane Y, Aviner R, Wu CT, Li W, Zheng W, Talbot D, Catching A, Doitsh G, Su W, Gekko CE, Nayak A, Ernst JD, Brodsky L, Brodsky E, Rousseau E, Capponi S, Bianco S, Nakamura R, Jackson PK, Frydman J, Andino R. PMID: 34852237; PMCID: PMC8598942.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansAnimalsCells
    10. Author Correction: Cotranslational prolyl hydroxylation is essential for flavivirus biogenesis. Nature. 2021 Nov; 599(7885):E3. Aviner R, Li KH, Frydman J, Andino R. PMID: 34675396.
      View in: PubMed   Mentions:    Fields:    
    11. Cotranslational prolyl hydroxylation is essential for flavivirus biogenesis. Nature. 2021 08; 596(7873):558-564. Aviner R, Li KH, Frydman J, Andino R. PMID: 34408324; PMCID: PMC8789550.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    12. Examining the interplay between face mask usage, asymptomatic transmission, and social distancing on the spread of COVID-19. Sci Rep. 2021 08 06; 11(1):15998. Catching A, Capponi S, Yeh MT, Bianco S, Andino R. PMID: 34362936; PMCID: PMC8346500.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansCellsPHPublic Health
    13. SARS-CoV-2 infects human pancreatic β cells and elicits β cell impairment. Cell Metab. 2021 08 03; 33(8):1565-1576.e5. Wu CT, Lidsky PV, Xiao Y, Lee IT, Cheng R, Nakayama T, Jiang S, Demeter J, Bevacqua RJ, Chang CA, Whitener RL, Stalder AK, Zhu B, Chen H, Goltsev Y, Tzankov A, Nayak JV, Nolan GP, Matter MS, Andino R, Jackson PK. PMID: 34081912; PMCID: PMC8130512.
      View in: PubMed   Mentions: 198     Fields:    Translation:HumansCells
    14. Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant. Cell. 2021 06 24; 184(13):3426-3437.e8. Deng X, Garcia-Knight MA, Khalid MM, Servellita V, Wang C, Morris MK, Sotomayor-González A, Glasner DR, Reyes KR, Gliwa AS, Reddy NP, Sanchez San Martin C, Federman S, Cheng J, Balcerek J, Taylor J, Streithorst JA, Miller S, Sreekumar B, Chen PY, Schulze-Gahmen U, Taha TY, Hayashi JM, Simoneau CR, Kumar GR, McMahon S, Lidsky PV, Xiao Y, Hemarajata P, Green NM, Espinosa A, Kath C, Haw M, Bell J, Hacker JK, Hanson C, Wadford DA, Anaya C, Ferguson D, Frankino PA, Shivram H, Lareau LF, Wyman SK, Ott M, Andino R, Chiu CY. PMID: 33991487; PMCID: PMC8057738.
      View in: PubMed   Mentions: 335     Fields:    Translation:HumansCells
    15. Species-Specific Evolution of Ebola Virus during Replication in Human and Bat Cells. Cell Rep. 2020 08 18; 32(7):108028. Whitfield ZJ, Prasad AN, Ronk AJ, Kuzmin IV, Ilinykh PA, Andino R, Bukreyev A. PMID: 32814037; PMCID: PMC7434439.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    16. Epidemics as an adaptive driving force determining lifespan setpoints. Proc Natl Acad Sci U S A. 2020 07 28; 117(30):17937-17948. Lidsky PV, Andino R. PMID: 32651271; PMCID: PMC7395509.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    17. Engineering the Live-Attenuated Polio Vaccine to Prevent Reversion to Virulence. Cell Host Microbe. 2020 05 13; 27(5):736-751.e8. Yeh MT, Bujaki E, Dolan PT, Smith M, Wahid R, Konz J, Weiner AJ, Bandyopadhyay AS, Van Damme P, De Coster I, Revets H, Macadam A, Andino R. PMID: 32330425; PMCID: PMC7566161.
      View in: PubMed   Mentions: 116     Fields:    Translation:HumansAnimalsCellsPHPublic HealthCTClinical Trials
    18. Enterovirus pathogenesis requires the host methyltransferase SETD3. Nat Microbiol. 2019 12; 4(12):2523-2537. Diep J, Ooi YS, Wilkinson AW, Peters CE, Foy E, Johnson JR, Zengel J, Ding S, Weng KF, Laufman O, Jang G, Xu J, Young T, Verschueren E, Kobluk KJ, Elias JE, Sarnow P, Greenberg HB, Hüttenhain R, Nagamine CM, Andino R, Krogan NJ, Gozani O, Carette JE. PMID: 31527793; PMCID: PMC6879830.
      View in: PubMed   Mentions: 44     Fields:    Translation:AnimalsCells
    19. Viral Generated Inter-Organelle Contacts Redirect Lipid Flux for Genome Replication. Cell. 2019 07 11; 178(2):275-289.e16. Laufman O, Perrino J, Andino R. PMID: 31204099; PMCID: PMC7077330.
      View in: PubMed   Mentions: 81     Fields:    Translation:HumansCells
    20. Comparative Flavivirus-Host Protein Interaction Mapping Reveals Mechanisms of Dengue and Zika Virus Pathogenesis. Cell. 2018 12 13; 175(7):1931-1945.e18. Shah PS, Link N, Jang GM, Sharp PP, Zhu T, Swaney DL, Johnson JR, Von Dollen J, Ramage HR, Satkamp L, Newton B, Hüttenhain R, Petit MJ, Baum T, Everitt A, Laufman O, Tassetto M, Shales M, Stevenson E, Iglesias GN, Shokat L, Tripathi S, Balasubramaniam V, Webb LG, Aguirre S, Willsey AJ, Garcia-Sastre A, Pollard KS, Cherry S, Gamarnik AV, Marazzi I, Taunton J, Fernandez-Sesma A, Bellen HJ, Andino R, Krogan NJ. PMID: 30550790; PMCID: PMC6474419.
      View in: PubMed   Mentions: 202     Fields:    Translation:HumansAnimalsCells
    21. A Viral Protein Restricts Drosophila RNAi Immunity by Regulating Argonaute Activity and Stability. Cell Host Microbe. 2018 10 10; 24(4):542-557.e9. Nayak A, Kim DY, Trnka MJ, Kerr CH, Lidsky PV, Stanley DJ, Rivera BM, Li KH, Burlingame AL, Jan E, Frydman J, Gross JD, Andino R. PMID: 30308158; PMCID: PMC6450077.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimalsCells
    22. Mechanisms and Concepts in RNA Virus Population Dynamics and Evolution. Annu Rev Virol. 2018 09 29; 5(1):69-92. Dolan PT, Whitfield ZJ, Andino R. PMID: 30048219.
      View in: PubMed   Mentions: 82     Fields:    Translation:Cells
    23. Hsp90 shapes protein and RNA evolution to balance trade-offs between protein stability and aggregation. Nat Commun. 2018 05 03; 9(1):1781. Geller R, Pechmann S, Acevedo A, Andino R, Frydman J. PMID: 29725062; PMCID: PMC5934419.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansCells
    24. Mapping the Evolutionary Potential of RNA Viruses. Cell Host Microbe. 2018 04 11; 23(4):435-446. Dolan PT, Whitfield ZJ, Andino R. PMID: 29649440; PMCID: PMC5908228.
      View in: PubMed   Mentions: 46     Fields:    Translation:Cells
    25. The Diversity, Structure, and Function of Heritable Adaptive Immunity Sequences in the Aedes aegypti Genome. Curr Biol. 2017 Nov 20; 27(22):3511-3519.e7. Whitfield ZJ, Dolan PT, Kunitomi M, Tassetto M, Seetin MG, Oh S, Heiner C, Paxinos E, Andino R. PMID: 29129531; PMCID: PMC5698160.
      View in: PubMed   Mentions: 78     Fields:    Translation:AnimalsCellsPHPublic Health
    26. Poliovirus intrahost evolution is required to overcome tissue-specific innate immune responses. Nat Commun. 2017 08 29; 8(1):375. Xiao Y, Dolan PT, Goldstein EF, Li M, Farkov M, Brodsky L, Andino R. PMID: 28851882; PMCID: PMC5575128.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansAnimalsCells
    27. Circulating Immune Cells Mediate a Systemic RNAi-Based Adaptive Antiviral Response in Drosophila. Cell. 2017 04 06; 169(2):314-325.e13. Tassetto M, Kunitomi M, Andino R. PMID: 28388413; PMCID: PMC5730277.
      View in: PubMed   Mentions: 129     Fields:    Translation:AnimalsCells
    28. Editorial overview: Viral pathogenesis: Strategies for virus survival - Acute versus persistent infections. Curr Opin Virol. 2017 04; 23:v. Andino R, Diamond M. PMID: 28622998; PMCID: PMC7129643.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    29. The Evolutionary Pathway to Virulence of an RNA Virus. Cell. 2017 03 23; 169(1):35-46.e19. Stern A, Yeh MT, Zinger T, Smith M, Wright C, Ling G, Nielsen R, Macadam A, Andino R. PMID: 28340348; PMCID: PMC5787669.
      View in: PubMed   Mentions: 78     Fields:    Translation:AnimalsCells
    30. Viral polymerases. Virus Res. 2017 04 15; 234:1-3. Menéndez-Arias L, Andino R. PMID: 28188807; PMCID: PMC5710837.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    31. Characterization of Viral Populations by Using Circular Sequencing. J Virol. 2016 10 15; 90(20):8950-3. Whitfield ZJ, Andino R. PMID: 27440878; PMCID: PMC5044820.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
    32. RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence. Cell Host Microbe. 2016 Apr 13; 19(4):493-503. Xiao Y, Rouzine IM, Bianco S, Acevedo A, Goldstein EF, Farkov M, Brodsky L, Andino R. PMID: 27078068; PMCID: PMC4840895.
      View in: PubMed   Mentions: 86     Fields:    Translation:HumansAnimalsCells
    33. Viral quasispecies. Virology. 2015 May; 479-480:46-51. Andino R, Domingo E. PMID: 25824477; PMCID: PMC4826558.
      View in: PubMed   Mentions: 212     Fields:    Translation:Cells
    34. Costs and benefits of mutational robustness in RNA viruses. Cell Rep. 2014 Aug 21; 8(4):1026-36. Stern A, Bianco S, Yeh MT, Wright C, Butcher K, Tang C, Nielsen R, Andino R. PMID: 25127138; PMCID: PMC4142091.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansCells
    35. Use of host-like peptide motifs in viral proteins is a prevalent strategy in host-virus interactions. Cell Rep. 2014 Jun 12; 7(5):1729-1739. Hagai T, Azia A, Babu MM, Andino R. PMID: 24882001; PMCID: PMC4089993.
      View in: PubMed   Mentions: 61     Fields:    Translation:HumansCells
    36. Rationalizing the development of live attenuated virus vaccines. Nat Biotechnol. 2010 Jun; 28(6):573-9. Lauring AS, Jones JO, Andino R. PMID: 20531338; PMCID: PMC2883798.
      View in: PubMed   Mentions: 170     Fields:    Translation:HumansCells
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