Shatabdi Roy Chowdhury, PhD

Title(s)Postdoctoral Scholar, Cardiovascular Research Inst
SchoolSchool of Medicine
Address555 Mission Bay Blvd South, #482
San Francisco CA 94158
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    Collapse Biography 
    Collapse Education and Training
    Arizona State University, Tempe, AZ, USAPhD2018Biochemistry
    University of Hyderabad, Hyderabad, IndiaMS2011Biochemistry
    Ruia College, University of Mumbai, Mumbai, IndiaBS2009Biochemistry

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome. IUCrJ. 2018 Sep 01; 5(Pt 5):619-634. Woitowich NC, Halavaty AS, Waltz P, Kupitz C, Valera J, Tracy G, Gallagher KD, Claesson E, Nakane T, Pandey S, Nelson G, Tanaka R, Nango E, Mizohata E, Owada S, Tono K, Joti Y, Nugent AC, Patel H, Mapara A, Hopkins J, Duong P, Bizhga D, Kovaleva SE, St Peter R, Hernandez CN, Ozarowski WB, Roy-Chowdhuri S, Yang JH, Edlund P, Takala H, Ihalainen J, Brayshaw J, Norwood T, Poudyal I, Fromme P, Spence JCH, Moffat K, Westenhoff S, Schmidt M, Stojkovic EA. PMID: 30224965; PMCID: PMC6126659.
      View in: PubMed   Mentions: 17     Fields:    
    2. Enzyme intermediates captured "on the fly" by mix-and-inject serial crystallography. BMC Biol. 2018 05 31; 16(1):59. Olmos JL, Pandey S, Martin-Garcia JM, Calvey G, Katz A, Knoska J, Kupitz C, Hunter MS, Liang M, Oberthuer D, Yefanov O, Wiedorn M, Heyman M, Holl M, Pande K, Barty A, Miller MD, Stern S, Roy-Chowdhury S, Coe J, Nagaratnam N, Zook J, Verburgt J, Norwood T, Poudyal I, Xu D, Koglin J, Seaberg MH, Zhao Y, Bajt S, Grant T, Mariani V, Nelson G, Subramanian G, Bae E, Fromme R, Fung R, Schwander P, Frank M, White TA, Weierstall U, Zatsepin N, Spence J, Fromme P, Chapman HN, Pollack L, Tremblay L, Ourmazd A, Phillips GN, Schmidt M. PMID: 29848358; PMCID: PMC5977757.
      View in: PubMed   Mentions: 66     Fields:    Translation:Cells
    3. Femtosecond X-ray diffraction from an aerosolized beam of protein nanocrystals. J Appl Crystallogr. 2018 Feb 01; 51(Pt 1):133-139. Awel S, Kirian RA, Wiedorn MO, Beyerlein KR, Roth N, Horke DA, Oberthür D, Knoska J, Mariani V, Morgan A, Adriano L, Tolstikova A, Xavier PL, Yefanov O, Aquila A, Barty A, Roy-Chowdhury S, Hunter MS, James D, Robinson JS, Weierstall U, Rode AV, Bajt S, Küpper J, Chapman HN. PMID: 29507547; PMCID: PMC5822990.
      View in: PubMed   Mentions: 5  
    4. Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation. IUCrJ. 2017 Jul 01; 4(Pt 4):439-454. Martin-Garcia JM, Conrad CE, Nelson G, Stander N, Zatsepin NA, Zook J, Zhu L, Geiger J, Chun E, Kissick D, Hilgart MC, Ogata C, Ishchenko A, Nagaratnam N, Roy-Chowdhury S, Coe J, Subramanian G, Schaffer A, James D, Ketwala G, Venugopalan N, Xu S, Corcoran S, Ferguson D, Weierstall U, Spence JCH, Cherezov V, Fromme P, Fischetti RF, Liu W. PMID: 28875031; PMCID: PMC5571807.
      View in: PubMed   Mentions: 76     Fields:    
    5. Structural enzymology using X-ray free electron lasers. Struct Dyn. 2017 Jul; 4(4):044003. Kupitz C, Olmos JL, Holl M, Tremblay L, Pande K, Pandey S, Oberthür D, Hunter M, Liang M, Aquila A, Tenboer J, Calvey G, Katz A, Chen Y, Wiedorn MO, Knoska J, Meents A, Majriani V, Norwood T, Poudyal I, Grant T, Miller MD, Xu W, Tolstikova A, Morgan A, Metz M, Martin-Garcia JM, Zook JD, Roy-Chowdhury S, Coe J, Nagaratnam N, Meza D, Fromme R, Basu S, Frank M, White T, Barty A, Bajt S, Yefanov O, Chapman HN, Zatsepin N, Nelson G, Weierstall U, Spence J, Schwander P, Pollack L, Fromme P, Ourmazd A, Phillips GN, Schmidt M. PMID: 28083542; PMCID: PMC5178802.
      View in: PubMed   Mentions: 48  
    6. The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography. Sci Rep. 2016 10 19; 6:35279. Edlund P, Takala H, Claesson E, Henry L, Dods R, Lehtivuori H, Panman M, Pande K, White T, Nakane T, Berntsson O, Gustavsson E, Båth P, Modi V, Roy-Chowdhury S, Zook J, Berntsen P, Pandey S, Poudyal I, Tenboer J, Kupitz C, Barty A, Fromme P, Koralek JD, Tanaka T, Spence J, Liang M, Hunter MS, Boutet S, Nango E, Moffat K, Groenhof G, Ihalainen J, Stojkovic EA, Schmidt M, Westenhoff S. PMID: 27756898; PMCID: PMC5069500.
      View in: PubMed   Mentions: 19     Fields:    Translation:Cells
    7. Second harmonic generation correlation spectroscopy for characterizing translationally diffusing protein nanocrystals. Acta Crystallogr D Struct Biol. 2016 07; 72(Pt 7):849-59. Dow XY, Dettmar CM, DeWalt EL, Newman JA, Dow AR, Roy-Chowdhury S, Coe JD, Kupitz C, Fromme P, Simpson GJ. PMID: 27377382; PMCID: PMC4932918.
      View in: PubMed   Mentions: 1  Translation:Cells
    8. Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein. Science. 2016 May 06; 352(6286):725-9. Pande K, Hutchison CD, Groenhof G, Aquila A, Robinson JS, Tenboer J, Basu S, Boutet S, DePonte DP, Liang M, White TA, Zatsepin NA, Yefanov O, Morozov D, Oberthuer D, Gati C, Subramanian G, James D, Zhao Y, Koralek J, Brayshaw J, Kupitz C, Conrad C, Roy-Chowdhury S, Coe JD, Metz M, Xavier PL, Grant TD, Koglin JE, Ketawala G, Fromme R, Šrajer V, Henning R, Spence JC, Ourmazd A, Schwander P, Weierstall U, Frank M, Fromme P, Barty A, Chapman HN, Moffat K, van Thor JJ, Schmidt M. PMID: 27151871; PMCID: PMC5291079.
      View in: PubMed   Mentions: 143     Fields:    Translation:Cells
    9. Serial femtosecond crystallography: A revolution in structural biology. Arch Biochem Biophys. 2016 Jul 15; 602:32-47. Martin-Garcia JM, Conrad CE, Coe J, Roy-Chowdhury S, Fromme P. PMID: 27143509; PMCID: PMC4909539.
      View in: PubMed   Mentions: 48     Fields:    Translation:Cells
    10. Protein Crystallization in an Actuated Microfluidic Nanowell Device. Cryst Growth Des. 2016; 16(4):2074-2082. Abdallah BG, Roy-Chowdhury S, Fromme R, Fromme P, Ros A. PMID: 27683240; PMCID: PMC5036579.
      View in: PubMed   Mentions: 6  
    11. Macromolecular diffractive imaging using imperfect crystals. Nature. 2016 Feb 11; 530(7589):202-6. Ayyer K, Yefanov OM, Oberthür D, Roy-Chowdhury S, Galli L, Mariani V, Basu S, Coe J, Conrad CE, Fromme R, Schaffer A, Dörner K, James D, Kupitz C, Metz M, Nelson G, Xavier PL, Beyerlein KR, Schmidt M, Sarrou I, Spence JC, Weierstall U, White TA, Yang JH, Zhao Y, Liang M, Aquila A, Hunter MS, Robinson JS, Koglin JE, Boutet S, Fromme P, Barty A, Chapman HN. PMID: 26863980; PMCID: PMC4839592.
      View in: PubMed   Mentions: 39     Fields:    Translation:Cells
    12. Microfluidic sorting of protein nanocrystals by size for X-ray free-electron laser diffraction. Struct Dyn. 2015 Jul; 2(4):041719. Abdallah BG, Zatsepin NA, Roy-Chowdhury S, Coe J, Conrad CE, Dörner K, Sierra RG, Stevenson HP, Camacho-Alanis F, Grant TD, Nelson G, James D, Calero G, Wachter RM, Spence JC, Weierstall U, Fromme P, Ros A. PMID: 26798818; PMCID: PMC4711642.
      View in: PubMed   Mentions: 9  
    13. Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser. Nature. 2015 Jul 30; 523(7562):561-7. Kang Y, Zhou XE, Gao X, He Y, Liu W, Ishchenko A, Barty A, White TA, Yefanov O, Han GW, Xu Q, de Waal PW, Ke J, Tan MH, Zhang C, Moeller A, West GM, Pascal BD, Van Eps N, Caro LN, Vishnivetskiy SA, Lee RJ, Suino-Powell KM, Gu X, Pal K, Ma J, Zhi X, Boutet S, Williams GJ, Messerschmidt M, Gati C, Zatsepin NA, Wang D, James D, Basu S, Roy-Chowdhury S, Conrad CE, Coe J, Liu H, Lisova S, Kupitz C, Grotjohann I, Fromme R, Jiang Y, Tan M, Yang H, Li J, Wang M, Zheng Z, Li D, Howe N, Zhao Y, Standfuss J, Diederichs K, Dong Y, Potter CS, Carragher B, Caffrey M, Jiang H, Chapman HN, Spence JC, Fromme P, Weierstall U, Ernst OP, Katritch V, Gurevich VV, Griffin PR, Hubbell WL, Stevens RC, Cherezov V, Melcher K, Xu HE. PMID: 26200343; PMCID: PMC4521999.
      View in: PubMed   Mentions: 365     Fields:    Translation:HumansAnimalsCells
    14. A novel inert crystal delivery medium for serial femtosecond crystallography. IUCrJ. 2015 Jul 01; 2(Pt 4):421-30. Conrad CE, Basu S, James D, Wang D, Schaffer A, Roy-Chowdhury S, Zatsepin NA, Aquila A, Coe J, Gati C, Hunter MS, Koglin JE, Kupitz C, Nelson G, Subramanian G, White TA, Zhao Y, Zook J, Boutet S, Cherezov V, Spence JC, Fromme R, Weierstall U, Fromme P. PMID: 26177184; PMCID: PMC4491314.
      View in: PubMed   Mentions: 60     Fields:    
    15. Crystallization of Photosystem II for Time-Resolved Structural Studies Using an X-ray Free Electron Laser. Methods Enzymol. 2015; 557:459-82. Coe J, Kupitz C, Basu S, Conrad CE, Roy-Chowdhury S, Fromme R, Fromme P. PMID: 25950978; PMCID: PMC4558102.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    16. High throughput protein nanocrystal fractionation in a microfluidic sorter. Anal Chem. 2015 Apr 21; 87(8):4159-67. Abdallah BG, Roy-Chowdhury S, Coe J, Fromme P, Ros A. PMID: 25794348; PMCID: PMC4830504.
      View in: PubMed   Mentions: 11     Fields:    
    17. Time-resolved serial crystallography captures high-resolution intermediates of photoactive yellow protein. Science. 2014 12 05; 346(6214):1242-6. Tenboer J, Basu S, Zatsepin N, Pande K, Milathianaki D, Frank M, Hunter M, Boutet S, Williams GJ, Koglin JE, Oberthuer D, Heymann M, Kupitz C, Conrad C, Coe J, Roy-Chowdhury S, Weierstall U, James D, Wang D, Grant T, Barty A, Yefanov O, Scales J, Gati C, Seuring C, Srajer V, Henning R, Schwander P, Fromme R, Ourmazd A, Moffat K, Van Thor JJ, Spence JC, Fromme P, Chapman HN, Schmidt M. PMID: 25477465; PMCID: PMC4361027.
      View in: PubMed   Mentions: 220     Fields:    Translation:Cells
    18. Microcrystallization techniques for serial femtosecond crystallography using photosystem II from Thermosynechococcus elongatus as a model system. Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17; 369(1647):20130316. Kupitz C, Grotjohann I, Conrad CE, Roy-Chowdhury S, Fromme R, Fromme P. PMID: 24914149; PMCID: PMC4052858.
      View in: PubMed   Mentions: 40     Fields:    Translation:Cells
    19. Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser. Nature. 2014 Sep 11; 513(7517):261-5. Kupitz C, Basu S, Grotjohann I, Fromme R, Zatsepin NA, Rendek KN, Hunter MS, Shoeman RL, White TA, Wang D, James D, Yang JH, Cobb DE, Reeder B, Sierra RG, Liu H, Barty A, Aquila AL, Deponte D, Kirian RA, Bari S, Bergkamp JJ, Beyerlein KR, Bogan MJ, Caleman C, Chao TC, Conrad CE, Davis KM, Fleckenstein H, Galli L, Hau-Riege SP, Kassemeyer S, Laksmono H, Liang M, Lomb L, Marchesini S, Martin AV, Messerschmidt M, Milathianaki D, Nass K, Ros A, Roy-Chowdhury S, Schmidt K, Seibert M, Steinbrener J, Stellato F, Yan L, Yoon C, Moore TA, Moore AL, Pushkar Y, Williams GJ, Boutet S, Doak RB, Weierstall U, Frank M, Chapman HN, Spence JC, Fromme P. PMID: 25043005; PMCID: PMC4821544.
      View in: PubMed   Mentions: 134     Fields:    Translation:Cells