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Shatabdi Roy Chowdhury, PhD

Title(s)Postdoctoral Scholar, Cardiovascular Research Inst
SchoolSchool of Medicine
Emailshatabdi.roychowdhury@ucsf.edu
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    Collapse Biography 
    Collapse Education and Training
    Arizona State University, Tempe, AZ, USAPhD2018Biochemistry
    University of Hyderabad, Hyderabad, IndiaMS2011Biochemistry
    Ruia College, University of Mumbai, Mumbai, IndiaBS2009Biochemistry

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    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Woitowich NC, Halavaty AS, Waltz P, Kupitz C, Valera J, Tracy G, Gallagher KD, Claesson E, Nakane T, Pandey S, Nelson G, Tanaka R, Nango E, Mizohata E, Owada S, Tono K, Joti Y, Nugent AC, Patel H, Mapara A, Hopkins J, Duong P, Bizhga D, Kovaleva SE, St Peter R, Hernandez CN, Ozarowski WB, Roy-Chowdhuri S, Yang JH, Edlund P, Takala H, Ihalainen J, Brayshaw J, Norwood T, Poudyal I, Fromme P, Spence JCH, Moffat K, Westenhoff S, Schmidt M, Stojkovic EA. Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome. IUCrJ. 2018 Sep 01; 5(Pt 5):619-634. PMID: 30224965.
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    2. Olmos JL, Pandey S, Martin-Garcia JM, Calvey G, Katz A, Knoska J, Kupitz C, Hunter MS, Liang M, Oberthuer D, Yefanov O, Wiedorn M, Heyman M, Holl M, Pande K, Barty A, Miller MD, Stern S, Roy-Chowdhury S, Coe J, Nagaratnam N, Zook J, Verburgt J, Norwood T, Poudyal I, Xu D, Koglin J, Seaberg MH, Zhao Y, Bajt S, Grant T, Mariani V, Nelson G, Subramanian G, Bae E, Fromme R, Fung R, Schwander P, Frank M, White TA, Weierstall U, Zatsepin N, Spence J, Fromme P, Chapman HN, Pollack L, Tremblay L, Ourmazd A, Phillips GN, Schmidt M. Enzyme intermediates captured "on the fly" by mix-and-inject serial crystallography. BMC Biol. 2018 05 31; 16(1):59. PMID: 29848358.
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    3. Awel S, Kirian RA, Wiedorn MO, Beyerlein KR, Roth N, Horke DA, Oberthür D, Knoska J, Mariani V, Morgan A, Adriano L, Tolstikova A, Xavier PL, Yefanov O, Aquila A, Barty A, Roy-Chowdhury S, Hunter MS, James D, Robinson JS, Weierstall U, Rode AV, Bajt S, Küpper J, Chapman HN. Femtosecond X-ray diffraction from an aerosolized beam of protein nanocrystals. J Appl Crystallogr. 2018 Feb 01; 51(Pt 1):133-139. PMID: 29507547.
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    4. Martin-Garcia JM, Conrad CE, Nelson G, Stander N, Zatsepin NA, Zook J, Zhu L, Geiger J, Chun E, Kissick D, Hilgart MC, Ogata C, Ishchenko A, Nagaratnam N, Roy-Chowdhury S, Coe J, Subramanian G, Schaffer A, James D, Ketwala G, Venugopalan N, Xu S, Corcoran S, Ferguson D, Weierstall U, Spence JCH, Cherezov V, Fromme P, Fischetti RF, Liu W. Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation. IUCrJ. 2017 Jul 01; 4(Pt 4):439-454. PMID: 28875031.
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    5. Kupitz C, Olmos JL, Holl M, Tremblay L, Pande K, Pandey S, Oberthür D, Hunter M, Liang M, Aquila A, Tenboer J, Calvey G, Katz A, Chen Y, Wiedorn MO, Knoska J, Meents A, Majriani V, Norwood T, Poudyal I, Grant T, Miller MD, Xu W, Tolstikova A, Morgan A, Metz M, Martin-Garcia JM, Zook JD, Roy-Chowdhury S, Coe J, Nagaratnam N, Meza D, Fromme R, Basu S, Frank M, White T, Barty A, Bajt S, Yefanov O, Chapman HN, Zatsepin N, Nelson G, Weierstall U, Spence J, Schwander P, Pollack L, Fromme P, Ourmazd A, Phillips GN, Schmidt M. Structural enzymology using X-ray free electron lasers. Struct Dyn. 2017 Jul; 4(4):044003. PMID: 28083542.
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    6. Edlund P, Takala H, Claesson E, Henry L, Dods R, Lehtivuori H, Panman M, Pande K, White T, Nakane T, Berntsson O, Gustavsson E, Båth P, Modi V, Roy-Chowdhury S, Zook J, Berntsen P, Pandey S, Poudyal I, Tenboer J, Kupitz C, Barty A, Fromme P, Koralek JD, Tanaka T, Spence J, Liang M, Hunter MS, Boutet S, Nango E, Moffat K, Groenhof G, Ihalainen J, Stojkovic EA, Schmidt M, Westenhoff S. The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography. Sci Rep. 2016 10 19; 6:35279. PMID: 27756898.
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    7. Dow XY, Dettmar CM, DeWalt EL, Newman JA, Dow AR, Roy-Chowdhury S, Coe JD, Kupitz C, Fromme P, Simpson GJ. Second harmonic generation correlation spectroscopy for characterizing translationally diffusing protein nanocrystals. Acta Crystallogr D Struct Biol. 2016 07; 72(Pt 7):849-59. PMID: 27377382.
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    8. Pande K, Hutchison CD, Groenhof G, Aquila A, Robinson JS, Tenboer J, Basu S, Boutet S, DePonte DP, Liang M, White TA, Zatsepin NA, Yefanov O, Morozov D, Oberthuer D, Gati C, Subramanian G, James D, Zhao Y, Koralek J, Brayshaw J, Kupitz C, Conrad C, Roy-Chowdhury S, Coe JD, Metz M, Xavier PL, Grant TD, Koglin JE, Ketawala G, Fromme R, Šrajer V, Henning R, Spence JC, Ourmazd A, Schwander P, Weierstall U, Frank M, Fromme P, Barty A, Chapman HN, Moffat K, van Thor JJ, Schmidt M. Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein. Science. 2016 May 06; 352(6286):725-9. PMID: 27151871.
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    9. Martin-Garcia JM, Conrad CE, Coe J, Roy-Chowdhury S, Fromme P. Serial femtosecond crystallography: A revolution in structural biology. Arch Biochem Biophys. 2016 Jul 15; 602:32-47. PMID: 27143509.
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    10. Abdallah BG, Roy-Chowdhury S, Fromme R, Fromme P, Ros A. Protein Crystallization in an Actuated Microfluidic Nanowell Device. Cryst Growth Des. 2016; 16(4):2074-2082. PMID: 27683240.
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    11. Ayyer K, Yefanov OM, Oberthür D, Roy-Chowdhury S, Galli L, Mariani V, Basu S, Coe J, Conrad CE, Fromme R, Schaffer A, Dörner K, James D, Kupitz C, Metz M, Nelson G, Xavier PL, Beyerlein KR, Schmidt M, Sarrou I, Spence JC, Weierstall U, White TA, Yang JH, Zhao Y, Liang M, Aquila A, Hunter MS, Robinson JS, Koglin JE, Boutet S, Fromme P, Barty A, Chapman HN. Macromolecular diffractive imaging using imperfect crystals. Nature. 2016 Feb 11; 530(7589):202-6. PMID: 26863980.
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    12. Abdallah BG, Zatsepin NA, Roy-Chowdhury S, Coe J, Conrad CE, Dörner K, Sierra RG, Stevenson HP, Camacho-Alanis F, Grant TD, Nelson G, James D, Calero G, Wachter RM, Spence JC, Weierstall U, Fromme P, Ros A. Microfluidic sorting of protein nanocrystals by size for X-ray free-electron laser diffraction. Struct Dyn. 2015 Jul; 2(4):041719. PMID: 26798818.
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    13. Kang Y, Zhou XE, Gao X, He Y, Liu W, Ishchenko A, Barty A, White TA, Yefanov O, Han GW, Xu Q, de Waal PW, Ke J, Tan MH, Zhang C, Moeller A, West GM, Pascal BD, Van Eps N, Caro LN, Vishnivetskiy SA, Lee RJ, Suino-Powell KM, Gu X, Pal K, Ma J, Zhi X, Boutet S, Williams GJ, Messerschmidt M, Gati C, Zatsepin NA, Wang D, James D, Basu S, Roy-Chowdhury S, Conrad CE, Coe J, Liu H, Lisova S, Kupitz C, Grotjohann I, Fromme R, Jiang Y, Tan M, Yang H, Li J, Wang M, Zheng Z, Li D, Howe N, Zhao Y, Standfuss J, Diederichs K, Dong Y, Potter CS, Carragher B, Caffrey M, Jiang H, Chapman HN, Spence JC, Fromme P, Weierstall U, Ernst OP, Katritch V, Gurevich VV, Griffin PR, Hubbell WL, Stevens RC, Cherezov V, Melcher K, Xu HE. Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser. Nature. 2015 Jul 30; 523(7562):561-7. PMID: 26200343.
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    14. Conrad CE, Basu S, James D, Wang D, Schaffer A, Roy-Chowdhury S, Zatsepin NA, Aquila A, Coe J, Gati C, Hunter MS, Koglin JE, Kupitz C, Nelson G, Subramanian G, White TA, Zhao Y, Zook J, Boutet S, Cherezov V, Spence JC, Fromme R, Weierstall U, Fromme P. A novel inert crystal delivery medium for serial femtosecond crystallography. IUCrJ. 2015 Jul 01; 2(Pt 4):421-30. PMID: 26177184.
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    15. Coe J, Kupitz C, Basu S, Conrad CE, Roy-Chowdhury S, Fromme R, Fromme P. Crystallization of Photosystem II for Time-Resolved Structural Studies Using an X-ray Free Electron Laser. Methods Enzymol. 2015; 557:459-82. PMID: 25950978.
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    16. Abdallah BG, Roy-Chowdhury S, Coe J, Fromme P, Ros A. High throughput protein nanocrystal fractionation in a microfluidic sorter. Anal Chem. 2015 Apr 21; 87(8):4159-67. PMID: 25794348.
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    17. Tenboer J, Basu S, Zatsepin N, Pande K, Milathianaki D, Frank M, Hunter M, Boutet S, Williams GJ, Koglin JE, Oberthuer D, Heymann M, Kupitz C, Conrad C, Coe J, Roy-Chowdhury S, Weierstall U, James D, Wang D, Grant T, Barty A, Yefanov O, Scales J, Gati C, Seuring C, Srajer V, Henning R, Schwander P, Fromme R, Ourmazd A, Moffat K, Van Thor JJ, Spence JC, Fromme P, Chapman HN, Schmidt M. Time-resolved serial crystallography captures high-resolution intermediates of photoactive yellow protein. Science. 2014 12 05; 346(6214):1242-6. PMID: 25477465.
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    18. Kupitz C, Grotjohann I, Conrad CE, Roy-Chowdhury S, Fromme R, Fromme P. Microcrystallization techniques for serial femtosecond crystallography using photosystem II from Thermosynechococcus elongatus as a model system. Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17; 369(1647):20130316. PMID: 24914149.
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    19. Kupitz C, Basu S, Grotjohann I, Fromme R, Zatsepin NA, Rendek KN, Hunter MS, Shoeman RL, White TA, Wang D, James D, Yang JH, Cobb DE, Reeder B, Sierra RG, Liu H, Barty A, Aquila AL, Deponte D, Kirian RA, Bari S, Bergkamp JJ, Beyerlein KR, Bogan MJ, Caleman C, Chao TC, Conrad CE, Davis KM, Fleckenstein H, Galli L, Hau-Riege SP, Kassemeyer S, Laksmono H, Liang M, Lomb L, Marchesini S, Martin AV, Messerschmidt M, Milathianaki D, Nass K, Ros A, Roy-Chowdhury S, Schmidt K, Seibert M, Steinbrener J, Stellato F, Yan L, Yoon C, Moore TA, Moore AL, Pushkar Y, Williams GJ, Boutet S, Doak RB, Weierstall U, Frank M, Chapman HN, Spence JC, Fromme P. Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser. Nature. 2014 Sep 11; 513(7517):261-5. PMID: 25043005.
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