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High-Throughput Antibody Neutralization Screening in Massively Parallel Droplet Arrays. bioRxiv. 2025 Feb 04.
Gutierrez-Gonzalez M, Fahad AS, Delley CL, Chung CY, Jin S, Boyle N, de Souza MO, Pirhanov A, Galvez NMS, França CT, Marglous S, Bhagat E, Vincent D, Neumeier D, Cao Y, Doria-Rose N, Reddy ST, Schmidt AG, Balazs AB, Abate AR, DeKosky BJ. PMID: 39975077; PMCID: PMC11838414.
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PATH-53. DNA MUTATION SEQUENCING AND METHYLATION ANALYSIS OF SOMATICNF1 MUTANT IDH-WILDTYPE GLIOBLASTOMA IDENTIFIES THREE EPIGENETIC GROUPS ANDCDKN2A/B LOSS AS A NEGATIVE PROGNOSTIC BIOMARKER. Neuro-Oncology. 2024 Nov 11; 26(Supplement_8):viii191-viii191.
Mirchia MK, Pan PS, Payne PE, Liu LJ, Peeran PZ, Shukla SP, Young YJ, Gupta GR, Wu WJ, Pak PJ, Seo SK, Ozawa OT, Na NB, Reddy RA, Braunstein BS, Phillips PJ, Chang CS, Solomon SD, Perry PA, Raleigh RD, Berger BM, Abate AA, Vasudevan VH. .
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Multiomic single cell sequencing identifies stemlike nature of mixed phenotype acute leukemia. Nat Commun. 2024 Sep 18; 15(1):8191.
Peretz CAC, Kennedy VE, Walia A, Delley CL, Koh A, Tran E, Clark IC, Hayford CE, D'Amato C, Xue Y, Fontanez KM, May-Zhang AA, Smithers T, Agam Y, Wang Q, Dai HP, Roy R, Logan AC, Perl AE, Abate A, Olshen A, Smith CC. PMID: 39294124; PMCID: PMC11411136.
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Translation:
HumansCells
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PURE-seq identifies Egr1 as a Potential Master Regulator in Murine Aging by Sequencing Long-Term Hematopoietic Stem Cells. bioRxiv. 2024 Aug 14.
Pan S, Chang KC, Fernández-Maestre I, Van Haver S, Wereski MG, Bowman RL, Levine RL, Abate AR. PMID: 39185152; PMCID: PMC11343112.
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PURE-seq identifies Egr1 as a Potential Master Regulator in Murine Aging by Sequencing Long-Term Hematopoietic Stem Cells. Res Sq. 2024 Aug 13.
Abate A, Pan S, Chang KC, Fernández-Maestre I, Haver S, Wereski M, Bowman R, Levine R. PMID: 39184105; PMCID: PMC11343284.
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Macrophage-fibroblast crosstalk drives Arg1-dependent lung fibrosis via ornithine loading. bioRxiv. 2024 Jul 31.
Yadav P, Ortega JG, Tamaki W, Chien C, Chang KC, Biswas N, Pan S, Nilsson J, Yin X, Bhattacharyya A, Boostanpour K, Jujaray T, Wang J, Tsukui T, Sheppard D, Li B, Maishan M, Taenaka H, Matthay MA, Muramatsu R, Maliskova L, Ghosh A, Eckalbar WL, Molofsky AB, Wolters PJ, Tamaki SJ, Bivona T, Abate AR, Wagner A, Tharp KM, Bhattacharya M. PMID: 39211079; PMCID: PMC11360891.
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FIND-seq: high-throughput nucleic acid cytometry for rare single-cell transcriptomics. Nat Protoc. 2024 Nov; 19(11):3191-3218.
Shin SW, Mudvari P, Thaploo S, Wheeler MA, Douek DC, Quintana FJ, Boritz EA, Abate AR, Clark IC. PMID: 39039320; PMCID: PMC11537836.
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Translation:
HumansCells
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Microbiome single cell atlases generated with a commercial instrument. bioRxiv. 2024 Mar 16.
Li X, Xu L, Demaree B, Noecker C, Bisanz JE, Weisgerber DW, Modavi C, Turnbaugh PJ, Abate AR. PMID: 37609281; PMCID: PMC10441329.
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Functional interactions between neurofibromatosis tumor suppressors underlie Schwann cell tumor de-differentiation and treatment resistance. Nat Commun. 2024 Jan 12; 15(1):477.
Vasudevan HN, Payne E, Delley CL, John Liu S, Mirchia K, Sale MJ, Lastella S, Nunez MS, Lucas CG, Eaton CD, Casey-Clyde T, Magill ST, Chen WC, Braunstein SE, Perry A, Jacques L, Reddy AT, Pekmezci M, Abate AR, McCormick F, Raleigh DR. PMID: 38216572; PMCID: PMC10786885.
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PubMed Mentions:
2 Fields:
Translation:
HumansAnimalsCells
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DDDR-18. SINGLE-CELL FUNCTIONAL GENOMIC ANALYSIS OF PHARMACOLOGIC RESPONSES IN NF1 MUTANT GLIOBLASTOMA REVEALS DISTINCT MECHANISMS OF ACTION FOR MEK AND SHP2 INHIBITION. Neuro-Oncology. 2023 Nov 10; 25(Supplement_5):v109-v109.
Pan PS, Liu LJ, Mirchia MK, Payne PE, Pak PJ, Seo SK, Ozawa OT, Raleigh RD, Berger BM, Abate AA, Vasudevan VH. .
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Printhead on a chip: empowering droplet-based bioprinting with microfluidics. Trends Biotechnol. 2024 03; 42(3):353-368.
Zhang P, Liu C, Modavi C, Abate A, Chen H. PMID: 37777352.
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PubMed Mentions:
2 Fields:
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Microbiome single cell atlases generated with a commercial instrument. Res Sq. 2023 Sep 14.
Abate A, Li X, Xu L, Demaree B, Noecker C, Bisanz J, Weisgerber D, Modavi C, Turnbaugh P. PMID: 37790580; PMCID: PMC10543498.
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Molecular Features of Resected Melanoma Brain Metastases, Clinical Outcomes, and Responses to Immunotherapy. JAMA Netw Open. 2023 08 01; 6(8):e2329186.
Vasudevan HN, Delley C, Chen WC, Mirchia K, Pan S, Shukla P, Aabedi AA, Nguyen MP, Morshed RA, Young JS, Boreta L, Fogh SE, Nakamura JL, Theodosopoulos PV, Phillips J, Hervey-Jumper SL, Daras M, Pike L, Aghi MK, Tsai K, Raleigh DR, Braunstein SE, Abate AR. PMID: 37589977; PMCID: PMC10436135.
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PubMed Mentions:
2 Fields:
Translation:
Humans
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Viral load quantitation at the point-of-care with shaken digital droplet RT-LAMP. Lab Chip. 2023 07 25; 23(15):3479-3486.
Weisgerber DW, Langer K, Servellita V, Xu P, Chiu CY, Abate AR. PMID: 37431299; PMCID: PMC10368152.
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Translation:
HumansCells
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Multiomic Single Cell Sequencing Identifies Stemlike Nature of Mixed Phenotype Acute Leukemia and Provides Novel Risk Stratification. bioRxiv. 2023 May 18.
Peretz CAC, Kennedy VE, Walia A, Delley CL, Koh A, Tran E, Clark IC, Hayford CE, D'Amato C, Xue Y, Fontanez KM, Roy R, Logan AC, Perl AE, Abate A, Olshen A, Smith CC. PMID: 37292835; PMCID: PMC10245585.
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Flow cytometric printing of double emulsions into open droplet arrays. Lab Chip. 2023 May 16; 23(10):2371-2377.
Zhang P, Xu L, Chen H, Abate AR. PMID: 37070963.
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PubMed Mentions: Fields:
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Droplet-based microfluidics. Nature Reviews Methods Primers. 2023 Apr 20; 3(1):32.
Moragues MT, Arguijo AD, Beneyton BT, Modavi MC, Simutis SK, Abate AA, Baret BJ, deMello dA, Densmore DD, Griffiths GA. .
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Droplet-based forward genetic screening of astrocyte-microglia cross-talk. Science. 2023 03 10; 379(6636):1023-1030.
Wheeler MA, Clark IC, Lee HG, Li Z, Linnerbauer M, Rone JM, Blain M, Akl CF, Piester G, Giovannoni F, Charabati M, Lee JH, Kye YC, Choi J, Sanmarco LM, Srun L, Chung EN, Flausino LE, Andersen BM, Rothhammer V, Yano H, Illouz T, Zandee SEJ, Daniel C, Artis D, Prinz M, Abate AR, Kuchroo VK, Antel JP, Prat A, Quintana FJ. PMID: 36893254; PMCID: PMC10066924.
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PubMed Mentions:
21 Fields:
Translation:
HumansCells
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Microfluidics-free single-cell genomics with templated emulsification. Nat Biotechnol. 2023 Nov; 41(11):1557-1566.
Clark IC, Fontanez KM, Meltzer RH, Xue Y, Hayford C, May-Zhang A, D'Amato C, Osman A, Zhang JQ, Hettige P, Ishibashi JSA, Delley CL, Weisgerber DW, Replogle JM, Jost M, Phong KT, Kennedy VE, Peretz CAC, Kim EA, Song S, Karlon W, Weissman JS, Smith CC, Gartner ZJ, Abate AR. PMID: 36879006; PMCID: PMC10635830.
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PubMed Mentions:
37 Fields:
Translation:
HumansAnimalsCells
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Identification of astrocyte regulators by nucleic acid cytometry. Nature. 2023 02; 614(7947):326-333.
Clark IC, Wheeler MA, Lee HG, Li Z, Sanmarco LM, Thaploo S, Polonio CM, Shin SW, Scalisi G, Henry AR, Rone JM, Giovannoni F, Charabati M, Akl CF, Aleman DM, Zandee SEJ, Prat A, Douek DC, Boritz EA, Quintana FJ, Abate AR. PMID: 36599367; PMCID: PMC9980163.
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PubMed Mentions:
18 Fields:
Translation:
HumansAnimalsCells
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HIV silencing and cell survival signatures in infected T cell reservoirs. Nature. 2023 02; 614(7947):318-325.
Clark IC, Mudvari P, Thaploo S, Smith S, Abu-Laban M, Hamouda M, Theberge M, Shah S, Ko SH, Pérez L, Bunis DG, Lee JS, Kilam D, Zakaria S, Choi S, Darko S, Henry AR, Wheeler MA, Hoh R, Butrus S, Deeks SG, Quintana FJ, Douek DC, Abate AR, Boritz EA. PMID: 36599978; PMCID: PMC9908556.
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PubMed Mentions:
27 Fields:
Translation:
HumansCells
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OP 1.2 – 00157 HIV Silencing and Cell Survival Signatures of HIV-Infected CD4 T Cell Transcriptomes under Antiretroviral Therapy (ART). Journal of Virus Eradication. 2022 Dec 1; 8:100097.
Clark CI, Mudvari MP, Thaploo TS, Smith SS, Abu-Laban AM, Deeks DS, Quintana QF, Douek DD, Abate AA, Boritz BE. .
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Rapid parallel generation of a fluorescently barcoded drop library from a microtiter plate using the plate-interfacing parallel encapsulation (PIPE) chip. Lab Chip. 2022 11 22; 22(23):4735-4745.
Zath GK, Sperling RA, Hoffman CW, Bikos DA, Abbasi R, Abate AR, Weitz DA, Chang CB. PMID: 36367139; PMCID: PMC10016142.
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1 Fields:
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Multiomic Single-Cell Sequencing of Mixed Phenotypic Acute Leukemia (MPAL) Reveals Complex Immunophenotypic, Transcriptional, and Genetic Heterogeneity. Blood. 2022 Nov 15; 140(Supplement 1):9146-9147.
Peretz PC, Kennedy KV, Walia WA, Delley DC, Koh KA, Tran TE, Clark CI, Hayford HC, Xue XY, D'Amato DC, Fontanez FK, Roy RR, Olshen OA, Logan LA, Perl PA, Abate AA, Smith SC. .
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DDDR-06. NEUROFIBROMATOSIS TUMOR SUPPRESSORS COOPERATIVELY DRIVE TUMOR DE-DIFFERENTIATION AND MEK INHIBITOR RESISTANCE IN PERIPHERAL NERVOUS SYSTEM TUMORS. Neuro-Oncology. 2022 Nov 14; 24(Supplement_7):vii99-vii99.
Vasudevan VH, Payne PE, Delley DC, Sale SM, Liu LS, Lastella LS, Lucas LC, Eaton EC, Casey-Clyde CT, Magill MS, Chen CW, Reddy RA, Braunstein BS, Perry PA, Jacques JL, Pekmezci PM, Abate AA, McCormick MF, Raleigh RD. .
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BIOM-02. MUTATIONAL ANALYSIS AND SINGLE CELL SEQUENCING OF MELANOMA BRAIN METASTASES REVEALS BRAF STATUS CORRELATES WITH CLINICAL OUTCOME AND DIFFERENTIAL IMMUNE POPULATIONS. Neuro-Oncology. 2022 Nov 14; 24(Supplement_7):vii3-vii4.
Vasudevan VH, Delley DC, Aabedi AA, Shukla SP, Nguyen NM, Morshed MR, Young YJ, Demaree DB, Diwanji DD, Hervey-Jumper HS, Boreta BL, Fogh FS, Nakamura NJ, Theodospoulos TP, Phillips PJ, Daras DM, Tsai TK, Sneed SP, Aghi AM, Raleigh RD, Braunstein BS, Abate AA. .
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Mutational Analysis and Single Cell Sequencing of Melanoma Brain Metastases. International Journal of Radiation Oncology • Biology • Physics. 2022 Nov 1; 114(3):e63-e64.
Vasudevan VH, Delley DC, Aabedi AA, Nguyen NM, Morshed MR, Young YJ, Demaree DB, Diwanji DD, Hervey-Jumper HS, Boreta BL, Fogh FS, Nakamura NJ, Theodosopoulos TP, Phillips PJ, Daras DM, Tsai TK, Sneed SP, Aghi AM, Raleigh RD, Braunstein BS, Abate AA. .
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Controlled fabrication of functional liver spheroids with microfluidic flow cytometric printing. Biofabrication. 2022 08 23; 14(4).
Zhang P, Li X, Chen JY, Abate AR. PMID: 35917810.
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PubMed Mentions:
1 Fields:
Translation:
Cells
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G1/S restriction point coordinates phasic gene expression and cell differentiation. Nat Commun. 2022 06 27; 13(1):3696.
DeVeale B, Liu L, Boileau R, Swindlehurst-Chan J, Marsh B, Freimer JW, Abate A, Blelloch R. PMID: 35760790; PMCID: PMC9237072.
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PubMed Mentions:
5 Fields:
Translation:
Animals
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Scalable Microbial Strain Inference in Metagenomic Data Using StrainFacts. Front Bioinform. 2022; 2:867386.
Smith BJ, Li X, Shi ZJ, Abate A, Pollard KS. PMID: 36304283; PMCID: PMC9580935.
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PubMed Mentions:
5
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Polyhedral Particles with Controlled Concavity by Indentation Templating. Anal Chem. 2022 05 31; 94(21):7475-7482.
Weisgerber DW, Hatori M, Li X, Abate AR. PMID: 35578791; PMCID: PMC9161221.
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PubMed Mentions: Fields:
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Droplet-microfluidics-assisted sequencing of HIV proviruses and their integration sites in cells from people on antiretroviral therapy. Nat Biomed Eng. 2022 08; 6(8):1004-1012.
Sun C, Liu L, Pérez L, Li X, Liu Y, Xu P, Boritz EA, Mullins JI, Abate AR. PMID: 35347274; PMCID: PMC9398922.
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PubMed Mentions:
10 Fields:
Translation:
HumansCells
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Microbowls with Controlled Concavity for Accurate Microscale Mass Spectrometry (Adv. Mater. 12/2022). Advanced Materials. 2022 Mar 24; 34(12):2270095.
Xu XL, Li LX, Li LW, Chang CK, Yang YH, Tao TN, Zhang ZP, Payne PE, Modavi MC, Humphries HJ, Lu LC, Abate AA. .
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Microbowls with Controlled Concavity for Accurate Microscale Mass Spectrometry. Adv Mater. 2022 Mar; 34(12):e2108194.
Xu L, Li X, Li W, Chang KC, Yang H, Tao N, Zhang P, Payne EM, Modavi C, Humphries J, Lu CW, Abate AR. PMID: 35045587; PMCID: PMC9028217.
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PubMed Mentions:
4 Fields:
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Dual-layered hydrogels allow complete genome recovery with nucleic acid cytometry. Biotechnol J. 2022 Apr; 17(4):e2100483.
Hatori MN, Modavi C, Xu P, Weisgerber D, Abate AR. PMID: 35088927; PMCID: PMC9208836.
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PubMed Mentions:
1 Fields:
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Robotic automation of droplet microfluidics. Biomicrofluidics. 2022 Jan; 16(1):014102.
Tran TM, Kim SC, Modavi C, Abate AR. PMID: 35145570; PMCID: PMC8816516.
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PubMed Mentions:
2
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Characterizing cell interactions at scale with made-to-order droplet ensembles (MODEs). Proc Natl Acad Sci U S A. 2022 02 01; 119(5).
Madrigal JL, Schoepp NG, Xu L, Powell CS, Delley CL, Siltanen CA, Danao J, Srinivasan M, Cole RH, Abate AR. PMID: 35074872; PMCID: PMC8812558.
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PubMed Mentions:
7 Fields:
Translation:
HumansAnimals
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Single-Cell Protein Profiling by Microdroplet Barcoding and Next-Generation Sequencing. Methods Mol Biol. 2022; 2386:101-111.
Kim SC, Haliburton JR, Gartner ZJ, Abate AR. PMID: 34766267; PMCID: PMC9122841.
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PubMed Mentions: Fields:
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The chromatin repressors EZH2 and Suv4-20h coregulate cell fate specification during hippocampal development. FEBS Lett. 2022 Feb; 596(3):294-308.
Chang KC, Rhodes CT, Zhang JQ, Moseley MC, Cardona SM, Huang SA, Rawls A, Lemmon VP, Berger MS, Abate AR, Lin CA. PMID: 34890048.
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PubMed Mentions:
2 Fields:
Translation:
AnimalsCells
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Mapping enzyme catalysis with metabolic biosensing. Nat Commun. 2021 11 23; 12(1):6803.
Xu L, Chang KC, Payne EM, Modavi C, Liu L, Palmer CM, Tao N, Alper HS, Kennedy RT, Cornett DS, Abate AR. PMID: 34815408; PMCID: PMC8611028.
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PubMed Mentions:
7 Fields:
Translation:
AnimalsCells
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CSIG-01. EPIGENETIC REPROGRAMMING DRIVES MALIGNANT PERIPHERAL NERVE SHEATH TUMOR (MPNST) DE-DIFFERENTIATION AND TREATMENT RESISTANCE. Neuro-Oncology. 2021 Nov 12; 23(Supplement_6):vi33-vi33.
Vasudevan VH, Lastella LS, Sale SM, Casey-Clyde CT, Demaree DB, Delley DC, Lucas LC, Magill MS, Liu LJ, Chen CW, Braunstein BS, Reddy RA, Perry PA, Jacques JL, Pekmezci PM, Abate AA, McCormick MF, Raleigh RD. .
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Change can be SCARI. Nat Chem Biol. 2021 11; 17(11):1119-1120.
Modavi C, Abate A. PMID: 34504323.
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PubMed Mentions: Fields:
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Accurate Bulk Quantitation of Droplet Digital Polymerase Chain Reaction. Anal Chem. 2021 07 27; 93(29):9974-9979.
Sun C, Liu L, Vasudevan HN, Chang KC, Abate AR. PMID: 34252272; PMCID: PMC8829825.
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PubMed Mentions:
5 Fields:
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Modular barcode beads for microfluidic single cell genomics. Sci Rep. 2021 05 25; 11(1):10857.
Delley CL, Abate AR. PMID: 34035349; PMCID: PMC8149635.
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PubMed Mentions:
10 Fields:
Translation:
HumansCells
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Sequencing Ultrarare Targets with Compound Nucleic Acid Cytometry. Anal Chem. 2021 05 25; 93(20):7422-7429.
Sun C, Chang KC, Abate AR. PMID: 33971091; PMCID: PMC9022902.
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PubMed Mentions:
1 Fields:
Translation:
HumansCells
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Constrained chromatin accessibility in PU.1-mutated agammaglobulinemia patients. J Exp Med. 2021 07 05; 218(7).
Le Coz C, Nguyen DN, Su C, Nolan BE, Albrecht AV, Xhani S, Sun D, Demaree B, Pillarisetti P, Khanna C, Wright F, Chen PA, Yoon S, Stiegler AL, Maurer K, Garifallou JP, Rymaszewski A, Kroft SH, Olson TS, Seif AE, Wertheim G, Grant SFA, Vo LT, Puck JM, Sullivan KE, Routes JM, Zakharova V, Shcherbina A, Mukhina A, Rudy NL, Hurst ACE, Atkinson TP, Boggon TJ, Hakonarson H, Abate AR, Hajjar J, Nicholas SK, Lupski JR, Verbsky J, Chinn IK, Gonzalez MV, Wells AD, Marson A, Poon GMK, Romberg N. PMID: 33951726; PMCID: PMC8105723.
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PubMed Mentions:
16 Fields:
Translation:
HumansCells
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Barcoded viral tracing of single-cell interactions in central nervous system inflammation. Science. 2021 04 23; 372(6540).
Clark IC, Gutiérrez-Vázquez C, Wheeler MA, Li Z, Rothhammer V, Linnerbauer M, Sanmarco LM, Guo L, Blain M, Zandee SEJ, Chao CC, Batterman KV, Schwabenland M, Lotfy P, Tejeda-Velarde A, Hewson P, Manganeli Polonio C, Shultis MW, Salem Y, Tjon EC, Fonseca-Castro PH, Borucki DM, Alves de Lima K, Plasencia A, Abate AR, Rosene DL, Hodgetts KJ, Prinz M, Antel JP, Prat A, Quintana FJ. PMID: 33888612; PMCID: PMC8157482.
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PubMed Mentions:
83 Fields:
Translation:
HumansAnimalsCells
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Precision ejection of microfluidic droplets into air with a superhydrophobic outlet. Lab Chip. 2021 04 20; 21(8):1484-1491.
Zhang P, Chang KC, Abate AR. PMID: 33656500; PMCID: PMC8189694.
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PubMed Mentions:
1 Fields:
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Protein design-scapes generated by microfluidic DNA assembly elucidate domain coupling in the bacterial histidine kinase CpxA. Proc Natl Acad Sci U S A. 2021 03 23; 118(12).
Clark IC, Mensa B, Ochs CJ, Schmidt NW, Mravic M, Quintana FJ, DeGrado WF, Abate AR. PMID: 33723045; PMCID: PMC8000134.
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PubMed Mentions:
3 Fields:
Translation:
Cells
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Joint profiling of DNA and proteins in single cells to dissect genotype-phenotype associations in leukemia. Nat Commun. 2021 03 11; 12(1):1583.
Demaree B, Delley CL, Vasudevan HN, Peretz CAC, Ruff D, Smith CC, Abate AR. PMID: 33707421; PMCID: PMC7952600.
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PubMed Mentions:
39 Fields:
Translation:
HumansCells
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Particle Templated Emulsification enables Microfluidic-Free Droplet Assays. J Vis Exp. 2021 03 09; (169).
Weisgerber DW, Hatori MN, Abate AR. PMID: 33779600.
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PubMed Mentions: Fields:
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Particle Templated Emulsification enables Microfluidic-Free Droplet Assays. Journal of Visualized Experiments. 2021 Mar 9; (169).
Weisgerber WD, Hatori HM, Abate AA. .
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Simple, Affordable, and Modular Patterning of Cells using DNA. Journal of Visualized Experiments. 2021 Feb 24; (168).
Cabral CK, Patterson PD, Scheideler SO, Cole CR, Abate AA, Schaffer SD, Sohn SL, Gartner GZ. .
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Simple, Affordable, and Modular Patterning of Cells using DNA. J Vis Exp. 2021 02 24; (168).
Cabral KA, Patterson DM, Scheideler OJ, Cole R, Abate AR, Schaffer DV, Sohn LL, Gartner ZJ. PMID: 33720126; PMCID: PMC10870346.
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PubMed Mentions:
4 Fields:
Translation:
HumansCells
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High diversity droplet microfluidic libraries generated with a commercial liquid spotter. Sci Rep. 2021 02 23; 11(1):4351.
Zhang JQ, Siltanen CA, Dolatmoradi A, Sun C, Chang KC, Cole RH, Gartner ZJ, Abate AR. PMID: 33623093; PMCID: PMC7902812.
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PubMed Mentions:
1 Fields:
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Accurate bulk quantitation of droplet digital PCR. bioRxiv. 2021 Jan 15.
Sun C, Liu L, Vasudevan HN, Chang KC, Abate AR. PMID: 33469578; PMCID: PMC7814815.
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Digital droplet PCR accurately quantifies SARS-CoV-2 viral load from crude lysate without nucleic acid purification. Sci Rep. 2021 01 12; 11(1):780.
Vasudevan HN, Xu P, Servellita V, Miller S, Liu L, Gopez A, Chiu CY, Abate AR. PMID: 33436939; PMCID: PMC7804156.
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PubMed Mentions:
52 Fields:
Translation:
HumansCells
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Networks of High Aspect Ratio Particles to Direct Colloidal Assembly Dynamics and Cellular Interactions. Adv Funct Mater. 2020 Nov 25; 30(48).
Finbloom JA, Demaree B, Abate AR, Desai TA. PMID: 33250685; PMCID: PMC7687842.
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PubMed Mentions:
3
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High-Definition Single-Cell Printing: Cell-by-Cell Fabrication of Biological Structures. Adv Mater. 2020 Dec; 32(52):e2005346.
Zhang P, Abate AR. PMID: 33206435; PMCID: PMC7987217.
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PubMed Mentions:
13 Fields:
Translation:
HumansAnimalsCells
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Single-cell mutation analysis of clonal evolution in myeloid malignancies. Nature. 2020 11; 587(7834):477-482.
Miles LA, Bowman RL, Merlinsky TR, Csete IS, Ooi AT, Durruthy-Durruthy R, Bowman M, Famulare C, Patel MA, Mendez P, Ainali C, Demaree B, Delley CL, Abate AR, Manivannan M, Sahu S, Goldberg AD, Bolton KL, Zehir A, Rampal R, Carroll MP, Meyer SE, Viny AD, Levine RL. PMID: 33116311; PMCID: PMC7677169.
View in:
PubMed Mentions:
219 Fields:
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Targeted Single-Cell RNA and DNA Sequencing With Fluorescence-Activated Droplet Merger. Anal Chem. 2020 11 03; 92(21):14616-14623.
Clark IC, Delley CL, Sun C, Thakur R, Stott SL, Thaploo S, Li Z, Quintana FJ, Abate AR. PMID: 33049138; PMCID: PMC8182774.
View in:
PubMed Mentions:
5 Fields:
Translation:
HumansCells
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Multiplatform genomic profiling and magnetic resonance imaging identify mechanisms underlying intratumor heterogeneity in meningioma. Nat Commun. 2020 09 23; 11(1):4803.
Magill ST, Vasudevan HN, Seo K, Villanueva-Meyer JE, Choudhury A, John Liu S, Pekmezci M, Findakly S, Hilz S, Lastella S, Demaree B, Braunstein SE, Bush NAO, Aghi MK, Theodosopoulos PV, Sneed PK, Abate AR, Berger MS, McDermott MW, Lim DA, Ullian EM, Costello JF, Raleigh DR. PMID: 32968068; PMCID: PMC7511976.
View in:
PubMed Mentions:
42 Fields:
Translation:
HumansCells
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Digital droplet PCR accurately quantifies SARS-CoV-2 viral load from crude lysate without nucleic acid purification. medRxiv. 2020 Sep 03.
Vasudevan H, Xu P, Servellita V, Miller S, Liu L, Gopez A, Chiu CY, Abate AR. PMID: 32908995; PMCID: PMC7480047.
View in:
PubMed Mentions:
-
Microfluidic particle zipper enables controlled loading of droplets with distinct particle types. Lab Chip. 2020 07 14; 20(14):2465-2472.
Delley CL, Abate AR. PMID: 32531004; PMCID: PMC7978498.
View in:
PubMed Mentions:
4 Fields:
-
High Throughput Yeast Strain Phenotyping with Droplet-Based RNA Sequencing. J Vis Exp. 2020 05 21; (159).
Zhang JQ, Chang KC, Liu L, Gartner ZJ, Abate AR. PMID: 32510483.
View in:
PubMed Mentions: Fields:
Translation:
AnimalsCells
-
High Throughput Yeast Strain Phenotyping with Droplet-Based RNA Sequencing. Journal of Visualized Experiments. 2020 May 21; (159).
Zhang ZJ, Chang CK, Liu LL, Gartner GZ, Abate AA. .
View in:
Publisher Site Mentions:
-
Microfluidic automated plasmid library enrichment for biosynthetic gene cluster discovery. Nucleic Acids Res. 2020 05 07; 48(8):e48.
Xu P, Modavi C, Demaree B, Twigg F, Liang B, Sun C, Zhang W, Abate AR. PMID: 32095820; PMCID: PMC7192590.
View in:
PubMed Mentions:
5 Fields:
Translation:
CellsPHPublic Health
-
Linked optical and gene expression profiling of single cells at high-throughput. Genome Biol. 2020 02 24; 21(1):49.
Zhang JQ, Siltanen CA, Liu L, Chang KC, Gartner ZJ, Abate AR. PMID: 32093753; PMCID: PMC7041248.
View in:
PubMed Mentions:
8 Fields:
Translation:
HumansAnimalsCells
-
Multiplatform Molecular Profiling Reveals Epigenomic Intratumor Heterogeneity in Ependymoma. Cell Rep. 2020 02 04; 30(5):1300-1309.e5.
Liu SJ, Magill ST, Vasudevan HN, Hilz S, Villanueva-Meyer JE, Lastella S, Daggubati V, Spatz J, Choudhury A, Orr BA, Demaree B, Seo K, Ferris SP, Abate AR, Oberheim Bush NA, Bollen AW, McDermott MW, Costello JF, Raleigh DR. PMID: 32023450; PMCID: PMC7313374.
View in:
PubMed Mentions:
9 Fields:
Translation:
HumansCells
-
Discovery of Stable and Selective Antibody Mimetics from Combinatorial Libraries of Polyvalent, Loop-Functionalized Peptoid Nanosheets. ACS Nano. 2020 01 28; 14(1):185-195.
Kim JH, Kim SC, Kline MA, Grzincic EM, Tresca BW, Cardiel J, Karbaschi M, Dehigaspitiya DC, Chen Y, Udumula V, Jian T, Murray DJ, Yun L, Connolly MD, Liu J, Ren G, Chen CL, Kirshenbaum K, Abate AR, Zuckermann RN. PMID: 31789500; PMCID: PMC9506602.
View in:
PubMed Mentions:
11 Fields:
Translation:
Cells
-
OP 1.3 Single-cell transcriptome sequencing of latently-infected cells ex vivo using PCR-activated cell sorting (PACS). Journal of virus eradication. 2019 Dec 1; 5:1-2.
Boritz BE, Clark CI, Abate AA, Quintana QF, Deeks DS, Douek DD. .
View in:
Publisher Site Mentions:
-
Combined Single-Cell DNA Genotyping and Protein Quantification (DAb-seq) in Acute Myeloid Leukemias Reveals Distinct Immunophenotypic Subsets Among Pathogenic Clones. Blood. 2019 Nov 13; 134(Supplement_1):2088-2088.
Demaree DB, Delley DC, Peretz PC, Vasudevan VH, Ruff RD, Ooi OA, Smith SC, Abate AA. .
View in:
Publisher Site Mentions:
-
TMOD-27. A NEURAL CREST CELL SUBPOPULATION UNDERLIES INTRATUMOR HETEROGENEITY IN MENINGIOMA. Neuro-Oncology. 2019 Nov 11; 21(Supplement_6):vi268-vi268.
Magill MS, Vasudevan VH, Seo SK, John Liu JS, Hilz HS, Villanueva-Meyer VJ, Choudhury CA, Demaree DB, Lim LD, Braunstein BS, Ann Oberheim-Bush AN, Ullian UE, Aghi AM, Theodosopoulos TP, Sneed SP, Abate AA, Berger BM, McDermott MM, Costello CJ, Raleigh RD. .
View in:
Publisher Site Mentions:
-
Uniform, Large-Area, Highly Ordered Peptoid Monolayer and Bilayer Films for Sensing Applications. Langmuir. 2019 10 22; 35(42):13671-13680.
Murray DJ, Kim JH, Grzincic EM, Kim SC, Abate AR, Zuckermann RN. PMID: 31603340.
View in:
PubMed Mentions:
5 Fields:
-
Human intestinal spheroids cultured using Sacrificial Micromolding as a model system for studying drug transport. Sci Rep. 2019 07 09; 9(1):9936.
Samy KE, Levy ES, Phong K, Demaree B, Abate AR, Desai TA. PMID: 31289365; PMCID: PMC6616551.
View in:
PubMed Mentions:
13 Fields:
Translation:
HumansCells
-
Abstract 3527: Combined high-throughput DNA genotyping and protein quantification in single cancer cells. Molecular and Cellular Biology / Genetics. 2019 Jul 1; 3527-3527.
Demaree DB, Delley DC, Ruff RD, Treusch TS, Eastburn ED, Jones JK, Abate AA. .
View in:
Publisher Site Mentions:
-
HIGH-RESOLUTION CLONAL ANALYSIS OF TUMORS WITH SIMULTANEOUS SINGLE-CELL DNA SEQUENCING AND CELL SURFACE PHENOTYPING. HemaSphere. 2019 Jun 1; 3:439.
Eastburn ED, Delley DC, Demaree DB, Dhingra DD, Mendez MP, Ruff RD, Abate AA. .
View in:
Publisher Site Mentions:
-
High throughput gene expression profiling of yeast colonies with microgel-culture Drop-seq. Lab Chip. 2019 05 14; 19(10):1838-1849.
Liu L, Dalal CK, Heineike BM, Abate AR. PMID: 31020292; PMCID: PMC7909483.
View in:
PubMed Mentions:
6 Fields:
Translation:
Animals
-
Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage. Nat Immunol. 2019 02; 20(2):163-172.
Aran D, Looney AP, Liu L, Wu E, Fong V, Hsu A, Chak S, Naikawadi RP, Wolters PJ, Abate AR, Butte AJ, Bhattacharya M. PMID: 30643263; PMCID: PMC6340744.
View in:
PubMed Mentions:
1720 Fields:
Translation:
HumansAnimalsCells
-
Direct quantification of EGFR variant allele frequency in cell-free DNA using a microfluidic-free digital droplet PCR assay. Methods Cell Biol. 2018; 148:119-131.
Demaree B, Weisgerber D, Dolatmoradi A, Hatori M, Abate AR. PMID: 30473066.
View in:
PubMed Mentions:
4 Fields:
Translation:
Humans
-
Microfluidic bead encapsulation above 20 kHz with triggered drop formation. Lab Chip. 2018 12 07; 18(23):3598-3605.
Clark IC, Abate AR. PMID: 30362490; PMCID: PMC6251341.
View in:
PubMed Mentions:
12 Fields:
-
Particle-Templated Emulsification for Microfluidics-Free Digital Biology. Anal Chem. 2018 08 21; 90(16):9813-9820.
Hatori MN, Kim SC, Abate AR. PMID: 30033717; PMCID: PMC6122844.
View in:
PubMed Mentions:
23 Fields:
Translation:
Animals
-
An Ultrahigh-throughput Microfluidic Platform for Single-cell Genome Sequencing. J Vis Exp. 2018 05 23; (135).
Demaree B, Weisgerber D, Lan F, Abate AR. PMID: 29889211; PMCID: PMC6101372.
View in:
PubMed Mentions:
17 Fields:
Translation:
Humans
-
An Ultrahigh-throughput Microfluidic Platform for Single-cell Genome Sequencing. Journal of Visualized Experiments. 2018 May 23; (135).
Demaree DB, Weisgerber WD, Lan LF, Abate AA. .
View in:
Publisher Site Mentions:
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An Oil-Free Picodrop Bioassay Platform for Synthetic Biology. Sci Rep. 2018 05 21; 8(1):7913.
Siltanen CA, Cole RH, Poust S, Chao L, Tyerman J, Kaufmann-Malaga B, Ubersax J, Gartner ZJ, Abate AR. PMID: 29784937; PMCID: PMC5962535.
View in:
PubMed Mentions:
10 Fields:
Translation:
Animals
-
A comparative analysis of single cell and droplet-based FACS for improving production phenotypes: Riboflavin overproduction in Yarrowia lipolytica. Metab Eng. 2018 05; 47:346-356.
Wagner JM, Liu L, Yuan SF, Venkataraman MV, Abate AR, Alper HS. PMID: 29698778.
View in:
PubMed Mentions:
18 Fields:
Translation:
Animals
-
Concentric electrodes improve microfluidic droplet sorting. Lab Chip. 2018 02 27; 18(5):710-713.
Clark IC, Thakur R, Abate AR. PMID: 29383336; PMCID: PMC6105269.
View in:
PubMed Mentions:
19 Fields:
Translation:
Cells
-
Combined aptamer and transcriptome sequencing of single cells. Sci Rep. 2018 02 13; 8(1):2919.
Delley CL, Liu L, Sarhan MF, Abate AR. PMID: 29440771; PMCID: PMC5811598.
View in:
PubMed Mentions:
11 Fields:
Translation:
AnimalsCells
-
Single-Cell RT-PCR in Microfluidic Droplets with Integrated Chemical Lysis. Anal Chem. 2018 01 16; 90(2):1273-1279.
Kim SC, Clark IC, Shahi P, Abate AR. PMID: 29256243; PMCID: PMC5991602.
View in:
PubMed Mentions:
38 Fields:
Translation:
HumansCells
-
Bulk double emulsification for flow cytometric analysis of microfluidic droplets. Analyst. 2017 Dec 04; 142(24):4618-4622.
Sukovich DJ, Kim SC, Ahmed N, Abate AR. PMID: 29131209; PMCID: PMC5997486.
View in:
PubMed Mentions:
8 Fields:
-
PP1.1 Whole genome sequencing of single HIV provirus and its proviral integration site for the study of HIV latency. Journal of virus eradication. 2017 Dec 1; 3:3-4.
Sun SC, Mullins MJ, Abate AA. .
View in:
Publisher Site Mentions:
-
Cell-free extract based optimization of biomolecular circuits with droplet microfluidics. Lab Chip. 2017 09 12; 17(18):3037-3042.
Hori Y, Kantak C, Murray RM, Abate AR. PMID: 28770936.
View in:
PubMed Mentions:
16 Fields:
Translation:
Cells
-
RNA-aptamers-in-droplets (RAPID) high-throughput screening for secretory phenotypes. Nat Commun. 2017 08 23; 8(1):332.
Abatemarco J, Sarhan MF, Wagner JM, Lin JL, Liu L, Hassouneh W, Yuan SF, Alper HS, Abate AR. PMID: 28835641; PMCID: PMC5569033.
View in:
PubMed Mentions:
28 Fields:
Translation:
Animals
-
Printed droplet microfluidics for on demand dispensing of picoliter droplets and cells. Proc Natl Acad Sci U S A. 2017 08 15; 114(33):8728-8733.
Cole RH, Tang SY, Siltanen CA, Shahi P, Zhang JQ, Poust S, Gartner ZJ, Abate AR. PMID: 28760972; PMCID: PMC5565430.
View in:
PubMed Mentions:
52 Fields:
Translation:
HumansCells
-
Rapid, chemical-free breaking of microfluidic emulsions with a hand-held antistatic gun. Biomicrofluidics. 2017 Jul; 11(4):044107.
Karbaschi M, Shahi P, Abate AR. PMID: 28794817; PMCID: PMC5519397.
View in:
PubMed Mentions:
14
-
Measurement of copy number variation in single cancer cells using rapid-emulsification digital droplet MDA. Microsyst Nanoeng. 2017; 3.
Kim SC, Premasekharan G, Clark IC, Gemeda HB, Paris PL, Abate AR. PMID: 30147985; PMCID: PMC6108428.
View in:
PubMed Mentions:
4
-
Finding a helix in a haystack: nucleic acid cytometry with droplet microfluidics. Lab Chip. 2017 06 13; 17(12):2032-2045.
Clark IC, Abate AR. PMID: 28540956; PMCID: PMC6005652.
View in:
PubMed Mentions:
14 Fields:
Translation:
HumansAnimalsCells
-
Single-cell genome sequencing at ultra-high-throughput with microfluidic droplet barcoding. Nat Biotechnol. 2017 Jul; 35(7):640-646.
Lan F, Demaree B, Ahmed N, Abate AR. PMID: 28553940; PMCID: PMC5531050.
View in:
PubMed Mentions:
158 Fields:
-
Efficient extraction of oil from droplet microfluidic emulsions. Biomicrofluidics. 2017 May; 11(3):034111.
Haliburton JR, Kim SC, Clark IC, Sperling RA, Weitz DA, Abate AR. PMID: 28611871; PMCID: PMC5438281.
View in:
PubMed Mentions:
5
-
Abseq: Ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding. Sci Rep. 2017 03 14; 7:44447.
Shahi P, Kim SC, Haliburton JR, Gartner ZJ, Abate AR. PMID: 28290550; PMCID: PMC5349531.
View in:
PubMed Mentions:
120 Fields:
Translation:
Humans
-
Genetic interaction mapping with microfluidic-based single cell sequencing. PLoS One. 2017; 12(2):e0171302.
Haliburton JR, Shao W, Deutschbauer A, Arkin A, Abate AR. PMID: 28170417; PMCID: PMC5295688.
View in:
PubMed Mentions:
6 Fields:
-
Sequence specific sorting of DNA molecules with FACS using 3dPCR. Sci Rep. 2017 01 04; 7:39385.
Sukovich DJ, Lance ST, Abate AR. PMID: 28051104; PMCID: PMC5209659.
View in:
PubMed Mentions:
15 Fields:
-
Rapid Encapsulation of Cell and Polymer Solutions with Bubble-Triggered Droplet Generation. Macromolecular Chemistry and Physics. 2017 Jan 1; 218(2):1600297.
Yan YZ, Clark CI, Abate AA. .
View in:
Publisher Site Mentions:
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PCR-activated cell sorting as a general, cultivation-free method for high-throughput identification and enrichment of virus hosts. J Virol Methods. 2017 04; 242:14-21.
Lim SW, Lance ST, Stedman KM, Abate AR. PMID: 28042018; PMCID: PMC5531043.
View in:
PubMed Mentions:
10 Fields:
Translation:
Cells
-
Peering below the diffraction limit: robust and specific sorting of viruses with flow cytometry. Virol J. 2016 12 01; 13(1):201.
Lance ST, Sukovich DJ, Stedman KM, Abate AR. PMID: 27906039; PMCID: PMC5131442.
View in:
PubMed Mentions:
11 Fields:
Translation:
HumansCells
-
Operation of Droplet-Microfluidic Devices with a Lab Centrifuge. Micromachines (Basel). 2016 Sep 06; 7(9).
Ahmed N, Sukovich D, Abate AR. PMID: 30404331; PMCID: PMC6190000.
View in:
PubMed Mentions:
5
-
Droplet barcoding for massively parallel single-molecule deep sequencing. Nat Commun. 2016 06 29; 7:11784.
Lan F, Haliburton JR, Yuan A, Abate AR. PMID: 27353563; PMCID: PMC4931254.
View in:
PubMed Mentions:
40 Fields:
-
Multicolor Fluorescence Detection for Droplet Microfluidics Using Optical Fibers. J Vis Exp. 2016 05 05; (111).
Cole RH, Gartner ZJ, Abate AR. PMID: 27214249; PMCID: PMC4942052.
View in:
PubMed Mentions:
10 Fields:
-
Multicolor Fluorescence Detection for Droplet Microfluidics Using Optical Fibers. Journal of Visualized Experiments. 2016 May 5; (111).
Cole CR, Gartner GZ, Abate AA. .
View in:
Publisher Site Mentions:
-
Electrical lysis of cells for detergent-free droplet assays. Biomicrofluidics. 2016 Mar; 10(2):024114.
de Lange N, Tran TM, Abate AR. PMID: 27051471; PMCID: PMC4808063.
View in:
PubMed Mentions:
10
-
Double Emulsion Generation Using a Polydimethylsiloxane (PDMS) Co-axial Flow Focus Device. J Vis Exp. 2015 Dec 25; (106):e53516.
Cole RH, Tran TM, Abate AR. PMID: 26780079; PMCID: PMC4780863.
View in:
PubMed Mentions:
3 Fields:
-
Enhanced sequencing coverage with digital droplet multiple displacement amplification. Nucleic Acids Res. 2016 Apr 20; 44(7):e66.
Sidore AM, Lan F, Lim SW, Abate AR. PMID: 26704978; PMCID: PMC4838355.
View in:
PubMed Mentions:
41 Fields:
Translation:
Cells
-
Patterning microfluidic device wettability with spatially-controlled plasma oxidation. Lab Chip. 2015 Aug 07; 15(15):3163-9.
Kim SC, Sukovich DJ, Abate AR. PMID: 26105774; PMCID: PMC5531047.
View in:
PubMed Mentions:
16 Fields:
Translation:
Cells
-
Compact and modular multicolour fluorescence detector for droplet microfluidics. Lab Chip. 2015 Jul 07; 15(13):2754-8.
Cole RH, de Lange N, Gartner ZJ, Abate AR. PMID: 26032595; PMCID: PMC4505729.
View in:
PubMed Mentions:
10 Fields:
-
Dissecting enzyme function with microfluidic-based deep mutational scanning. Proc Natl Acad Sci U S A. 2015 Jun 09; 112(23):7159-64.
Romero PA, Tran TM, Abate AR. PMID: 26040002; PMCID: PMC4466731.
View in:
PubMed Mentions:
97 Fields:
-
Microfluidic droplet enrichment for targeted sequencing. Nucleic Acids Res. 2015 Jul 27; 43(13):e86.
Eastburn DJ, Huang Y, Pellegrino M, Sciambi A, Ptácek LJ, Abate AR. PMID: 25873629; PMCID: PMC4513844.
View in:
PubMed Mentions:
14 Fields:
Translation:
HumansCells
-
PCR-activated cell sorting for cultivation-free enrichment and sequencing of rare microbes. PLoS One. 2015; 10(1):e0113549.
Lim SW, Tran TM, Abate AR. PMID: 25629401; PMCID: PMC4309575.
View in:
PubMed Mentions:
23 Fields:
Translation:
Cells
-
Rapid modulation of droplet composition with pincer microvalves. Lab Chip. 2015 Jan 07; 15(1):52-6.
Ochs CJ, Abate AR. PMID: 25385230; PMCID: PMC5531040.
View in:
PubMed Mentions:
5 Fields:
-
Accurate microfluidic sorting of droplets at 30 kHz. Lab Chip. 2015 Jan 07; 15(1):47-51.
Sciambi A, Abate AR. PMID: 25352174; PMCID: PMC4256106.
View in:
PubMed Mentions:
77 Fields:
-
Subclonal mutations in SETBP1 confer a poor prognosis in juvenile myelomonocytic leukemia. Blood. 2015 Jan 15; 125(3):516-24.
Stieglitz E, Troup CB, Gelston LC, Haliburton J, Chow ED, Yu KB, Akutagawa J, Taylor-Weiner AN, Liu YL, Wang YD, Beckman K, Emanuel PD, Braun BS, Abate A, Gerbing RB, Alonzo TA, Loh ML. PMID: 25395418; PMCID: PMC4296011.
View in:
PubMed Mentions:
36 Fields:
Translation:
Humans
-
Identification and genetic analysis of cancer cells with PCR-activated cell sorting. Nucleic Acids Res. 2014; 42(16):e128.
Eastburn DJ, Sciambi A, Abate AR. PMID: 25030902; PMCID: PMC4176366.
View in:
PubMed Mentions:
34 Fields:
Translation:
HumansCells
-
Picoinjection of microfluidic drops without metal electrodes. J Vis Exp. 2014 Apr 18; (86).
O'Donovan B, Tran T, Sciambi A, Abate A. PMID: 24797680; PMCID: PMC4172202.
View in:
PubMed Mentions:
1 Fields:
-
Generating electric fields in PDMS microfluidic devices with salt water electrodes. Lab Chip. 2014 Aug 07; 14(15):2605-9.
Sciambi A, Abate AR. PMID: 24671446; PMCID: PMC4079735.
View in:
PubMed Mentions:
42 Fields:
-
Coaxial flow focusing in poly(dimethylsiloxane) microfluidic devices. Biomicrofluidics. 2014 Jan; 8(1):016502.
Tran TM, Cater S, Abate AR. PMID: 24753732; PMCID: PMC3977865.
View in:
PubMed Mentions:
10
-
DNA sequence analysis with droplet-based microfluidics. Lab Chip. 2013 Dec 21; 13(24):4864-9.
Abate AR, Hung T, Sperling RA, Mary P, Rotem A, Agresti JJ, Weiner MA, Weitz DA. PMID: 24185402; PMCID: PMC4090915.
View in:
PubMed Mentions:
28 Fields:
Translation:
Cells
-
Ultrahigh-throughput sorting of microfluidic drops with flow cytometry. Lab Chip. 2013 Dec 07; 13(23):4563-72.
Lim SW, Abate AR. PMID: 24146020.
View in:
PubMed Mentions:
27 Fields:
Translation:
Animals
-
Ultrahigh-throughput Mammalian single-cell reverse-transcriptase polymerase chain reaction in microfluidic drops. Anal Chem. 2013 Aug 20; 85(16):8016-21.
Eastburn DJ, Sciambi A, Abate AR. PMID: 23885761.
View in:
PubMed Mentions:
55 Fields:
Translation:
HumansCells
-
Adding reagent to droplets with controlled rupture of encapsulated double emulsions. Biomicrofluidics. 2013; 7(4):44112.
Sciambi A, Abate AR. PMID: 24404045; PMCID: PMC3751951.
View in:
PubMed Mentions:
5
-
Picoinjection enables digital detection of RNA with droplet rt-PCR. PLoS One. 2013; 8(4):e62961.
Eastburn DJ, Sciambi A, Abate AR. PMID: 23658657; PMCID: PMC3637249.
View in:
PubMed Mentions:
28 Fields:
Translation:
HumansCells
-
Block-and-break generation of microdroplets with fixed volume. Biomicrofluidics. 2013; 7(2):24108.
van Steijn V, Korczyk PM, Derzsi L, Abate AR, Weitz DA, Garstecki P. PMID: 24404013; PMCID: PMC3637280.
View in:
PubMed Mentions:
8
-
From tubes to drops: droplet-based microfluidics for ultrahigh-throughput biology. Journal of Physics D. 2013 Mar 20; 46(11):114004.
Tran TT, Lan LF, Thompson TC, Abate AA. .
View in:
Publisher Site Mentions:
-
Adhesive-based bonding technique for PDMS microfluidic devices. Lab Chip. 2013 Feb 21; 13(4):632-5.
Thompson CS, Abate AR. PMID: 23282717.
View in:
PubMed Mentions:
17 Fields:
-
Flow focusing geometry generates droplets through a plug and squeeze mechanism. Lab Chip. 2012 Dec 21; 12(24):5130-2.
Romero PA, Abate AR. PMID: 23117576.
View in:
PubMed Mentions:
5 Fields:
-
Drop formation in non-planar microfluidic devices. Lab Chip. 2012 Nov 07; 12(21):4263-8.
Rotem A, Abate AR, Utada AS, Van Steijn V, Weitz DA. PMID: 22864475.
View in:
PubMed Mentions:
19 Fields:
-
Electrode-free picoinjection of microfluidic drops. Lab Chip. 2012 Oct 21; 12(20):4029-32.
O'Donovan B, Eastburn DJ, Abate AR. PMID: 22930333.
View in:
PubMed Mentions:
21 Fields:
-
Microfluidic synthesis of advanced microparticles for encapsulation and controlled release. Lab Chip. 2012 Jun 21; 12(12):2135-45.
Duncanson WJ, Lin T, Abate AR, Seiffert S, Shah RK, Weitz DA. PMID: 22510961.
View in:
PubMed Mentions:
61 Fields:
-
Experimental validation of plugging during drop formation in a T-junction. Lab Chip. 2012 Apr 21; 12(8):1516-21.
Abate AR, Mary P, van Steijn V, Weitz DA. PMID: 22402628.
View in:
PubMed Mentions:
6 Fields:
-
High throughput production of single core double emulsions in a parallelized microfluidic device. Lab Chip. 2012 Feb 21; 12(4):802-7.
Romanowsky MB, Abate AR, Rotem A, Holtze C, Weitz DA. PMID: 22222423.
View in:
PubMed Mentions:
52 Fields:
-
Measuring the elastic modulus of microgels using microdrops. Soft Matter. 2012 Jan 1; 8(39):10032-10035.
Abate AA, Han HL, Jin JL, Suo SZ, Weitz WD. .
View in:
Publisher Site Mentions:
-
Non-coalescence of oppositely charged droplets in pH-sensitive emulsions. Proc Natl Acad Sci U S A. 2012 Jan 10; 109(2):384-9.
Liu T, Seiffert S, Thiele J, Abate AR, Weitz DA, Richtering W. PMID: 22203968; PMCID: PMC3258642.
View in:
PubMed Mentions:
9 Fields:
-
Efficient encapsulation with plug-triggered drop formation. Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Sep; 84(3 Pt 1):031502.
Abate AR, Rotem A, Thiele J, Weitz DA. PMID: 22060374.
View in:
PubMed Mentions:
2 Fields:
-
Observation of spatial propagation of amyloid assembly from single nuclei. Proc Natl Acad Sci U S A. 2011 Sep 06; 108(36):14746-51.
Knowles TP, White DA, Abate AR, Agresti JJ, Cohen SI, Sperling RA, De Genst EJ, Dobson CM, Weitz DA. PMID: 21876182; PMCID: PMC3169119.
View in:
PubMed Mentions:
56 Fields:
Translation:
HumansAnimals
-
Early development drug formulation on a chip: fabrication of nanoparticles using a microfluidic spray dryer. Lab Chip. 2011 Jul 21; 11(14):2362-8.
Thiele J, Windbergs M, Abate AR, Trebbin M, Shum HC, Förster S, Weitz DA. PMID: 21617823.
View in:
PubMed Mentions:
3 Fields:
-
On-chip background noise reduction for cell-based assays in droplets. Lab Chip. 2011 Jun 21; 11(12):2066-70.
Mary P, Chen A, Chen I, Abate AR, Weitz DA. PMID: 21541376.
View in:
PubMed Mentions:
9 Fields:
Translation:
Animals
-
Faster multiple emulsification with drop splitting. Lab Chip. 2011 Jun 07; 11(11):1911-5.
Abate AR, Weitz DA. PMID: 21505660.
View in:
PubMed Mentions:
20 Fields:
-
Controlling droplet incubation using close-packed plug flow. Biomicrofluidics. 2011 Apr 04; 5(2):24101.
Mary P, Abate AR, Agresti JJ, Weitz DA. PMID: 21544238; PMCID: PMC3085533.
View in:
PubMed Mentions:
5
-
Air-bubble-triggered drop formation in microfluidics. Lab Chip. 2011 May 21; 11(10):1713-6.
Abate AR, Weitz DA. PMID: 21448493.
View in:
PubMed Mentions:
8 Fields:
-
Syringe-vacuum microfluidics: A portable technique to create monodisperse emulsions. Biomicrofluidics. 2011 Mar 16; 5:14107.
Abate AR, Weitz DA. PMID: 21483661; PMCID: PMC3073010.
View in:
PubMed Mentions:
18
-
Synthesis of monodisperse microparticles from non-Newtonian polymer solutions with microfluidic devices. Adv Mater. 2011 Apr 19; 23(15):1757-60.
Abate AR, Kutsovsky M, Seiffert S, Windbergs M, Pinto LF, Rotem A, Utada AS, Weitz DA. PMID: 21394794.
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23 Fields:
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One-step formation of multiple emulsions in microfluidics. Lab Chip. 2011 Jan 21; 11(2):253-8.
Abate AR, Thiele J, Weitz DA. PMID: 20967395.
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26 Fields:
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High-throughput injection with microfluidics using picoinjectors. Proc Natl Acad Sci U S A. 2010 Nov 09; 107(45):19163-6.
Abate AR, Hung T, Mary P, Agresti JJ, Weitz DA. PMID: 20962271; PMCID: PMC2984161.
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155 Fields:
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Fabrication of polymersomes using double-emulsion templates in glass-coated stamped microfluidic devices. Small. 2010 Aug 16; 6(16):1723-7.
Thiele J, Abate AR, Shum HC, Bachtler S, Förster S, Weitz DA. PMID: 20665757.
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17 Fields:
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Patterning microfluidic device wettability using flow confinement. Lab Chip. 2010 Jul 21; 10(14):1774-6.
Abate AR, Thiele J, Weinhart M, Weitz DA. PMID: 20490412.
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18 Fields:
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Microfluidic sorting with high-speed single-layer membrane valves. Applied Physics Letters. 2010 May 17; 96(20):203509.
Abate AA, Agresti AJ, Weitz WD. .
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Smart microgel capsules from macromolecular precursors. J Am Chem Soc. 2010 May 12; 132(18):6606-9.
Seiffert S, Thiele J, Abate AR, Weitz DA. PMID: 20397695.
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23 Fields:
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Functional patterning of PDMS microfluidic devices using integrated chemo-masks. Lab Chip. 2010 Jun 21; 10(12):1521-4.
Romanowsky MB, Heymann M, Abate AR, Krummel AT, Fraden S, Weitz DA. PMID: 20454730.
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2 Fields:
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Ultrahigh-throughput screening in drop-based microfluidics for directed evolution. Proc Natl Acad Sci U S A. 2010 Mar 02; 107(9):4004-9.
Agresti JJ, Antipov E, Abate AR, Ahn K, Rowat AC, Baret JC, Marquez M, Klibanov AM, Griffiths AD, Weitz DA. PMID: 20142500; PMCID: PMC2840095.
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312 Fields:
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High-throughput fluorescence detection using an integrated zone-plate array. Lab Chip. 2010 Apr 07; 10(7):852-6.
Schonbrun E, Abate AR, Steinvurzel PE, Weitz DA, Crozier KB. PMID: 20300671.
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17 Fields:
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Droplet microfluidics for fabrication of non-spherical particles. Macromol Rapid Commun. 2010 Jan 18; 31(2):108-18.
Shum HC, Abate AR, Lee D, Studart AR, Wang B, Chen CH, Thiele J, Shah RK, Krummel A, Weitz DA. PMID: 21590882.
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29 Fields:
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Multiple emulsions: Small 18/2009. Small. 2009 Sep 18; 5(18):na-na.
Abate AA, Weitz WD. .
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High-order multiple emulsions formed in poly(dimethylsiloxane) microfluidics. Small. 2009 Sep; 5(18):2030-2.
Abate AR, Weitz DA. PMID: 19554565.
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25 Fields:
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Magnetic Hydrogel Particles: Microfluidic Assembly of Magnetic Hydrogel Particles with Uniformly Anisotropic Structure (Adv. Mater. 31/2009). Advanced Materials. 2009 Aug 21; 21(31):na-na.
Chen CC, Abate AA, Lee LD, Terentjev TE, Weitz WD. .
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Microfluidic Assembly of Magnetic Hydrogel Particles with Uniformly Anisotropic Structure. Advanced Materials. 2009 Aug 21; 21(31):3201-3204.
Chen CC, Abate AA, Lee LD, Terentjev TE, Weitz WD. .
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Impact of inlet channel geometry on microfluidic drop formation. Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Aug; 80(2 Pt 2):026310.
Abate AR, Poitzsch A, Hwang Y, Lee J, Czerwinska J, Weitz DA. PMID: 19792252.
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24 Fields:
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A multi-color fast-switching microfluidic droplet dye laser. Lab Chip. 2009 Oct 07; 9(19):2767-71.
Tang SK, Li Z, Abate AR, Agresti JJ, Weitz DA, Psaltis D, Whitesides GM. PMID: 19967111.
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28 Fields:
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Beating Poisson encapsulation statistics using close-packed ordering. Lab Chip. 2009 Sep 21; 9(18):2628-31.
Abate AR, Chen CH, Agresti JJ, Weitz DA. PMID: 19704976.
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58 Fields:
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Surface acoustic wave (SAW) directed droplet flow in microfluidics for PDMS devices. Lab Chip. 2009 Sep 21; 9(18):2625-7.
Franke T, Abate AR, Weitz DA, Wixforth A. PMID: 19704975.
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60 Fields:
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Janus particles templated from double emulsion droplets generated using microfluidics. Langmuir. 2009 Apr 21; 25(8):4320-3.
Chen CH, Shah RK, Abate AR, Weitz DA. PMID: 19366216.
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13 Fields:
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Valve-based flow focusing for drop formation. Applied Physics Letters. 2009 Jan 12; 94(2):023503.
Abate AA, Romanowsky RM, Agresti AJ, Weitz WD. .
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Effective temperatures and activated dynamics for a two-dimensional air-driven granular system on two approaches to jamming. Phys Rev Lett. 2008 Dec 12; 101(24):245701.
Abate AR, Durian DJ. PMID: 19113632.
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4 Fields:
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Photoreactive coating for high-contrast spatial patterning of microfluidic device wettability. Lab Chip. 2008 Dec; 8(12):2157-60.
Abate AR, Krummel AT, Lee D, Marquez M, Holtze C, Weitz DA. PMID: 19023480.
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14 Fields:
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Single-layer membrane valves for elastomeric microfluidic devices. Applied Physics Letters. 2008 Jun 16; 92(24):243509.
Abate AA, Weitz WD. .
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Glass coating for PDMS microfluidic channels by sol-gel methods. Lab Chip. 2008 Apr; 8(4):516-8.
Abate AR, Lee D, Do T, Holtze C, Weitz DA. PMID: 18369504.
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PubMed Mentions:
60 Fields:
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Avalanche statistics and time-resolved grain dynamics for a driven heap. Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Dec; 76(6 Pt 1):061301.
Abate AR, Katsuragi H, Durian DJ. PMID: 18233839.
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1 Fields:
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Spatially heterogeneous dynamics in a granular system near jamming. Chaos. 2007 Dec; 17(4):041107.
Abate AR, Durian DJ. PMID: 18163762.
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Translation:
Cells
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Topological persistence and dynamical heterogeneities near jamming. Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Aug; 76(2 Pt 1):021306.
Abate AR, Durian DJ. PMID: 17930032.
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8 Fields:
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Approach to jamming in an air-fluidized granular bed. Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Sep; 74(3 Pt 1):031308.
Abate AR, Durian DJ. PMID: 17025624.
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4 Fields:
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Partition of energy for air-fluidized grains. Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Sep; 72(3 Pt 1):031305.
Abate AR, Durian DJ. PMID: 16241424.
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1 Fields:
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Penetration depth for shallow impact cratering. Phys Rev E Stat Nonlin Soft Matter Phys. 2005 May; 71(5 Pt 1):051305.
Ambroso MA, Santore CR, Abate AR, Durian DJ. PMID: 16089526.
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3 Fields:
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Statistical characterization of the forces on spheres in an upflow of air. Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Jan; 71(1 Pt 2):016313.
Ojha RP, Abate AR, Durian DJ. PMID: 15697728.
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1 Fields:
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Protease inhibitors protect macrophages from lipopolysaccharide-induced cytotoxicity: possible role for NF-kappaB. Life Sci. 1998; 62(12):1081-8.
Abate A, Schröder H. PMID: 9519810.
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3 Fields:
Translation:
AnimalsCells
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Aspirin protects endothelial cells from oxidative stress--possible synergism with vitamin E. FEBS Lett. 1997 Nov 17; 417(3):349-51.
Podhaisky HP, Abate A, Polte T, Oberle S, Schröder H. PMID: 9409749.
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17 Fields:
Translation:
AnimalsCells
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Photoactivation of the nitric oxide donor SIN-1. FEBS Lett. 1997 Apr 07; 406(1-2):66-8.
Ullrich T, Oberle S, Abate A, Schröder H. PMID: 9109387.
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7 Fields: