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Alex Perez, PhD, MD

Photo of Alex Perez, PhD, MD
Title(s)Assistant Professor, Anesthesia
SchoolSchool of Medicine
Address513 Parnassus Avenue, MSB, #266
San Francisco CA 94143
Phone415-514-0795
ORCID ORCID Icon0009-0003-3238-4643 Additional info
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    Collapse Biography 
    Collapse education and training
    Cornell University, New York AB05/2012Computational Biology
    Cornell University, New YorkPh.D12/2017Computer Science/Bioinformatics
    Cornell University, New YorkMD06/2019Medicine
    UCSF, CaliforniaResidency06/2024Anesthesiology
    Joint NCI/NIH & UCSF, Maryland & CaliforniaPostDoc06/2024Bioinformatics
    Collapse awards and honors
    Forbes Magazine2018Forbes 30 Under 30 --Science
    Interurban Clinical Club2018Jonathan Epstein Scholar
    Weill Cornell Medical College2019Alan Van Poznak Award for Excellence in Anesthesiology
    UCSF2023Mark A. Rosen Award
    Burroughs Wellcome Fund2024Finalist, Burroughs Wellcome CAMS

    Collapse Overview 
    Collapse overview
    I am a computational physician-scientist situated at the intersection of anesthesiology and genomics. A core and longstanding research focus of mine is investigating potential translations of CRISPR technology into medicine, as a direct agent, by leveraging individual genome level designs of CRISPR gRNAs against a patient's disease. To this end my work has shown the ability of CRISPR to enable the cancer-specific targeting and destruction of a patient derived glioblastoma multiforme (GBM) in a murine model, the ability to generate individual level CRISPR gRNA libraries in any CRISPR system, in any genome, and with an arbitrary level of specificity, and finally the ability to correct for off-target non-specificity effects in CRISPR libraries. An co-equal research focus I have relates to the role of non-coding genomics, specifically transposable elements, in the pathogenesis and disease maintenance of sepsis and critical illness. Transposable elements compose approximately 50% of the human genome and their importance in disease and aging is being increasingly appreciated. The role transposable elements play in disease states of extreme physiologic stress is of deep interest to me. My research is supported by public, private, and departmental grants.

    I am a board-certified anesthesiologist in general practice in the UCSF operating rooms. I have an undergraduate degree in computational biology, a Ph.D in computer science/bioinformatics, and a medical degree all from Cornell University. I completed my residency in anesthesiology at UCSF as part of the AIRR Program (formally Research Scholars Program). I completed my postdoc jointly at UCSF and NCI/NIH.
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    Collapse Research 
    Collapse research activities and funding
    Novel CRISPR therapy for breast cancer brain metastasis
    UCSF Resource Allocation Program RAPJul 1, 2025 - Jul 1, 2026
    Role: Co-PI
    Role of Transposable Elements in Septic Immune Aging
    NIGMS/NIH K08GM157557Feb 12, 2025 - Feb 12, 2030
    Role: PI
    Role of Transposable Elements in Septic Immune Aging
    FAER Research Fellowship GrantJan 1, 2024 - Dec 31, 2024
    Role: PI
    Stimulating Access to Research in Residency (StARR)
    NIA/NIH 5R38AG070171-03Jul 1, 2023 - Jul 1, 2024
    Role: Co-Investigator

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    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. CRISPR: fundamental principles and implications for anaesthesia. Br J Anaesth. 2025 Mar; 134(3):839-852. Perez AR, Mavrothalassitis O, Chen JS, Hellman J, Gropper MA. PMID: 39855935; PMCID: PMC11867086.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    2. Anaesthesiologists as translational scientists. Br J Anaesth. 2020 Apr; 124(4):373-376. Castellanos JG, Perez AR, Perez RK. PMID: 32000974.
      View in: PubMed   Mentions: 2     Fields:    
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