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A single bacterial enzyme i(NHI)bits phage DNA replication. Cell Host Microbe. 2022 04 13; 30(4):417-419.
Huiting E, Bondy-Denomy J. PMID: 35421333.
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Distinct Subcellular Localization of a Type I CRISPR Complex and the Cas3 Nuclease in Bacteria. J Bacteriol. 2022 Apr 07; e0010522.
Govindarajan S, Borges A, Karambelkar S, Bondy-Denomy J. PMID: 35389256.
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PubMed Mentions:
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Genetic Manipulation of a CAST of Characters in a Microbial Community. CRISPR J. 2022 02; 5(1):4-6.
Mozumdar D, Csörgo B, Bondy-Denomy J, Mozumdar D, Csörgo B, Bondy-Denomy J. PMID: 35119310; PMCID: PMC9009589.
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PubMed Mentions:
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Publisher Correction: CRISPR inactivation by integration. Nat Microbiol. 2022 Jan; 7(1):181.
Bondy-Denomy J. PMID: 34880417.
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PubMed Mentions:
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CRISPR inactivation by integration. Nat Microbiol. 2021 12; 6(12):1475-1476.
Bondy-Denomy J. PMID: 34819641.
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PubMed Mentions:
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Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems. Front Microbiol. 2021; 12:671522.
Taylor HN, Laderman E, Armbrust M, Hallmark T, Keiser D, Bondy-Denomy J, Jackson RN. PMID: 34093491; PMCID: PMC8175902.
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PubMed Mentions:
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Mobile element warfare via CRISPR and anti-CRISPR in Pseudomonas aeruginosa. Nucleic Acids Res. 2021 02 26; 49(4):2114-2125.
León LM, Park AE, Borges AL, Zhang JY, Bondy-Denomy J. PMID: 33544853; PMCID: PMC7913775.
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PubMed Mentions:
2 Fields:
Translation:
Cells
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Anti-CRISPRs go viral: The infection biology of CRISPR-Cas inhibitors. Cell Host Microbe. 2021 05 12; 29(5):704-714.
Li Y, Bondy-Denomy J. PMID: 33444542; PMCID: PMC8122014.
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PubMed Mentions:
1 Fields:
Translation:
Cells
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A phage-encoded anti-activator inhibits quorum sensing in Pseudomonas aeruginosa. Mol Cell. 2021 02 04; 81(3):571-583.e6.
Shah M, Taylor VL, Bona D, Tsao Y, Stanley SY, Pimentel-Elardo SM, McCallum M, Bondy-Denomy J, Howell PL, Nodwell JR, Davidson AR, Moraes TF, Maxwell KL. PMID: 33412111.
View in:
PubMed Mentions:
5 Fields:
Translation:
Cells
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Intracellular Organization by Jumbo Bacteriophages. J Bacteriol. 2020 12 18; 203(2).
Guan J, Bondy-Denomy J. PMID: 32868402; PMCID: PMC7950403.
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PubMed Mentions:
2 Fields:
Translation:
Cells
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Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements. Nat Commun. 2020 11 06; 11(1):5652.
Pinilla-Redondo R, Shehreen S, Marino ND, Fagerlund RD, Brown CM, Sørensen SJ, Fineran PC, Bondy-Denomy J. PMID: 33159058; PMCID: PMC7648647.
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PubMed Mentions:
6 Fields:
Translation:
Cells
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A compact Cascade-Cas3 system for targeted genome engineering. Nat Methods. 2020 12; 17(12):1183-1190.
Csörgo B, León LM, Chau-Ly IJ, Vasquez-Rifo A, Berry JD, Mahendra C, Crawford ED, Lewis JD, Bondy-Denomy J. PMID: 33077967; PMCID: PMC7611934.
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PubMed Mentions:
7 Fields:
Translation:
Cells
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Machine-learning approach expands the repertoire of anti-CRISPR protein families. Nat Commun. 2020 07 29; 11(1):3784.
Gussow AB, Park AE, Borges AL, Shmakov SA, Makarova KS, Wolf YI, Bondy-Denomy J, Koonin EV. PMID: 32728052; PMCID: PMC7391736.
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PubMed Mentions:
10 Fields:
Translation:
Cells
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Structures and Strategies of Anti-CRISPR-Mediated Immune Suppression. Annu Rev Microbiol. 2020 09 08; 74:21-37.
Wiegand T, Karambelkar S, Bondy-Denomy J, Wiedenheft B. PMID: 32503371; PMCID: PMC7712631.
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PubMed Mentions:
12 Fields:
Translation:
Cells
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Author Correction: Broad-spectrum anti-CRISPR proteins facilitate horizontal gene transfer. Nat Microbiol. 2020 Jun; 5(6):872.
Mahendra C, Christie KA, Osuna BA, Pinilla-Redondo R, Kleinstiver BP, Bondy-Denomy J. PMID: 32327734.
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PubMed Mentions:
1 Fields:
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Listeria Phages Induce Cas9 Degradation to Protect Lysogenic Genomes. Cell Host Microbe. 2020 07 08; 28(1):31-40.e9.
Osuna BA, Karambelkar S, Mahendra C, Christie KA, Garcia B, Davidson AR, Kleinstiver BP, Kilcher S, Bondy-Denomy J. PMID: 32325050; PMCID: PMC7351598.
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PubMed Mentions:
12 Fields:
Translation:
Cells
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Critical Anti-CRISPR Locus Repression by a Bi-functional Cas9 Inhibitor. Cell Host Microbe. 2020 07 08; 28(1):23-30.e5.
Osuna BA, Karambelkar S, Mahendra C, Sarbach A, Johnson MC, Kilcher S, Bondy-Denomy J. PMID: 32325051; PMCID: PMC7351615.
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PubMed Mentions:
11 Fields:
Translation:
Cells
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Broad-spectrum anti-CRISPR proteins facilitate horizontal gene transfer. Nat Microbiol. 2020 04; 5(4):620-629.
Mahendra C, Christie KA, Osuna BA, Pinilla-Redondo R, Kleinstiver BP, Bondy-Denomy J. PMID: 32218510; PMCID: PMC7194981.
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PubMed Mentions:
12 Fields:
Translation:
HumansCells
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Bacterial alginate regulators and phage homologs repress CRISPR-Cas immunity. Nat Microbiol. 2020 05; 5(5):679-687.
Borges AL, Castro B, Govindarajan S, Solvik T, Escalante V, Bondy-Denomy J. PMID: 32203410; PMCID: PMC7190418.
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PubMed Mentions:
6 Fields:
Translation:
Cells
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Anti-CRISPR protein applications: natural brakes for CRISPR-Cas technologies. Nat Methods. 2020 05; 17(5):471-479.
Marino ND, Pinilla-Redondo R, Csörgo B, Bondy-Denomy J. PMID: 32203383; PMCID: PMC8510557.
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PubMed Mentions:
26 Fields:
Translation:
HumansAnimals
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Author Correction: Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes. Nat Microbiol. 2020 Mar; 5(3):527.
Roux S, Krupovic M, Daly RA, Borges AL, Nayfach S, Schulz F, Sharrar A, Matheus Carnevali PB, Cheng JF, Ivanova NN, Bondy-Denomy J, Wrighton KC, Woyke T, Visel A, Kyrpides NC, Eloe-Fadrosh EA. PMID: 32047285; PMCID: PMC7608142.
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PubMed Mentions: Fields:
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A bacteriophage nucleus-like compartment shields DNA from CRISPR nucleases. Nature. 2020 01; 577(7789):244-248.
Mendoza SD, Nieweglowska ES, Govindarajan S, Leon LM, Berry JD, Tiwari A, Chaikeeratisak V, Pogliano J, Agard DA, Bondy-Denomy J. PMID: 31819262; PMCID: PMC6949375.
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PubMed Mentions:
27 Fields:
Translation:
Cells
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A Type IV-A CRISPR-Cas System in Pseudomonas aeruginosa Mediates RNA-Guided Plasmid Interference In Vivo. CRISPR J. 2019 12; 2(6):434-440.
Crowley VM, Catching A, Taylor HN, Borges AL, Metcalf J, Bondy-Denomy J, Jackson RN. PMID: 31809194; PMCID: PMC6919247.
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PubMed Mentions:
12 Fields:
Translation:
Cells
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Molecular mechanism of azithromycin resistance among typhoidal Salmonella strains in Bangladesh identified through passive pediatric surveillance. PLoS Negl Trop Dis. 2019 11; 13(11):e0007868.
Hooda Y, Sajib MSI, Rahman H, Luby SP, Bondy-Denomy J, Santosham M, Andrews JR, Saha SK, Saha S. PMID: 31730615; PMCID: PMC6881056.
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PubMed Mentions:
27 Fields:
Translation:
HumansCells
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CRISPR-Cas System of a Prevalent Human Gut Bacterium Reveals Hyper-targeting against Phages in a Human Virome Catalog. Cell Host Microbe. 2019 Sep 11; 26(3):325-335.e5.
Soto-Perez P, Bisanz JE, Berry JD, Lam KN, Bondy-Denomy J, Turnbaugh PJ. PMID: 31492655; PMCID: PMC6936622.
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PubMed Mentions:
10 Translation:
HumansCells
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Anti-CRISPR-Associated Proteins Are Crucial Repressors of Anti-CRISPR Transcription. Cell. 2019 09 05; 178(6):1452-1464.e13.
Stanley SY, Borges AL, Chen KH, Swaney DL, Krogan NJ, Bondy-Denomy J, Davidson AR. PMID: 31474367; PMCID: PMC6754177.
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PubMed Mentions:
22 Fields:
Translation:
Cells
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Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes. Nat Microbiol. 2019 11; 4(11):1895-1906.
Roux S, Krupovic M, Daly RA, Borges AL, Nayfach S, Schulz F, Sharrar A, Matheus Carnevali PB, Cheng JF, Ivanova NN, Bondy-Denomy J, Wrighton KC, Woyke T, Visel A, Kyrpides NC, Eloe-Fadrosh EA. PMID: 31332386; PMCID: PMC6813254.
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PubMed Mentions:
55 Fields:
Translation:
Cells
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Cas13 Helps Bacteria Play Dead when the Enemy Strikes. Cell Host Microbe. 2019 07 10; 26(1):1-2.
Mendoza SD, Bondy-Denomy J. PMID: 31295418; PMCID: PMC6842608.
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PubMed Mentions:
2 Translation:
Cells
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Anti-CRISPR-mediated control of gene editing and synthetic circuits in eukaryotic cells. Nat Commun. 2019 01 14; 10(1):194.
Nakamura M, Srinivasan P, Chavez M, Carter MA, Dominguez AA, La Russa M, Lau MB, Abbott TR, Xu X, Zhao D, Gao Y, Kipniss NH, Smolke CD, Bondy-Denomy J, Qi LS. PMID: 30643127; PMCID: PMC6331597.
View in:
PubMed Mentions:
32 Fields:
Translation:
HumansCells
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Temperature-Responsive Competitive Inhibition of CRISPR-Cas9. Mol Cell. 2019 02 07; 73(3):601-610.e5.
Jiang F, Liu JJ, Osuna BA, Xu M, Berry JD, Rauch BJ, Nogales E, Bondy-Denomy J, Doudna JA. PMID: 30595438; PMCID: PMC6480404.
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PubMed Mentions:
22 Fields:
Translation:
Cells
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Phage Morons Play an Important Role in Pseudomonas aeruginosa Phenotypes. J Bacteriol. 2018 11 15; 200(22).
Tsao YF, Taylor VL, Kala S, Bondy-Denomy J, Khan AN, Bona D, Cattoir V, Lory S, Davidson AR, Maxwell KL. PMID: 30150232; PMCID: PMC6199475.
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PubMed Mentions:
9 Fields:
Translation:
AnimalsCells
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A Unified Resource for Tracking Anti-CRISPR Names. CRISPR J. 2018 10; 1:304-305.
Bondy-Denomy J, Davidson AR, Doudna JA, Fineran PC, Maxwell KL, Moineau S, Peng X, Sontheimer EJ, Wiedenheft B. PMID: 31021273.
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PubMed Mentions:
19 Fields:
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Discovery of widespread type I and type V CRISPR-Cas inhibitors. Science. 2018 10 12; 362(6411):240-242.
Marino ND, Zhang JY, Borges AL, Sousa AA, Leon LM, Rauch BJ, Walton RT, Berry JD, Joung JK, Kleinstiver BP, Bondy-Denomy J. PMID: 30190308; PMCID: PMC6520112.
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PubMed Mentions:
51 Fields:
Translation:
HumansCells
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Bacteriophage Cooperation Suppresses CRISPR-Cas3 and Cas9 Immunity. Cell. 2018 08 09; 174(4):917-925.e10.
Borges AL, Zhang JY, Rollins MF, Osuna BA, Wiedenheft B, Bondy-Denomy J. PMID: 30033364; PMCID: PMC6086726.
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PubMed Mentions:
29 Fields:
Translation:
Cells
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Protein Inhibitors of CRISPR-Cas9. ACS Chem Biol. 2018 02 16; 13(2):417-423.
Bondy-Denomy J. PMID: 29251498; PMCID: PMC6049822.
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PubMed Mentions:
14 Fields:
Translation:
HumansCells
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How bacteria control the CRISPR-Cas arsenal. Curr Opin Microbiol. 2018 04; 42:87-95.
Leon LM, Mendoza SD, Bondy-Denomy J. PMID: 29169146; PMCID: PMC5899631.
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PubMed Mentions:
5 Fields:
Translation:
Cells
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Pseudomonas aeruginosa defends against phages through type IV pilus glycosylation. Nat Microbiol. 2018 Jan; 3(1):47-52.
Harvey H, Bondy-Denomy J, Marquis H, Sztanko KM, Davidson AR, Burrows LL. PMID: 29133883.
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PubMed Mentions:
19 Fields:
Translation:
Cells
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The Discovery, Mechanisms, and Evolutionary Impact of Anti-CRISPRs. Annu Rev Virol. 2017 09 29; 4(1):37-59.
Borges AL, Davidson AR, Bondy-Denomy J. PMID: 28749735; PMCID: PMC6039114.
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PubMed Mentions:
50 Fields:
Translation:
Cells
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Disabling Cas9 by an anti-CRISPR DNA mimic. Sci Adv. 2017 07; 3(7):e1701620.
Shin J, Jiang F, Liu JJ, Bray NL, Rauch BJ, Baik SH, Nogales E, Bondy-Denomy J, Corn JE, Doudna JA. PMID: 28706995; PMCID: PMC5507636.
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PubMed Mentions:
80 Fields:
Translation:
HumansCells
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Cas1 and the Csy complex are opposing regulators of Cas2/3 nuclease activity. Proc Natl Acad Sci U S A. 2017 06 27; 114(26):E5113-E5121.
Rollins MF, Chowdhury S, Carter J, Golden SM, Wilkinson RA, Bondy-Denomy J, Lander GC, Wiedenheft B. PMID: 28438998; PMCID: PMC5495223.
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PubMed Mentions:
32 Fields:
Translation:
Cells
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Structure Reveals Mechanisms of Viral Suppressors that Intercept a CRISPR RNA-Guided Surveillance Complex. Cell. 2017 03 23; 169(1):47-57.e11.
Chowdhury S, Carter J, Rollins MF, Golden SM, Jackson RN, Hoffmann C, Nosaka L, Bondy-Denomy J, Maxwell KL, Davidson AR, Fischer ER, Lander GC, Wiedenheft B. PMID: 28340349; PMCID: PMC5478280.
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PubMed Mentions:
59 Fields:
Translation:
Cells
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CRISPR control of virulence in Pseudomonas aeruginosa. Cell Res. 2017 02; 27(2):163-164.
Wiedenheft B, Bondy-Denomy J. PMID: 28084330; PMCID: PMC5339854.
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PubMed Mentions: Fields:
Translation:
AnimalsCells
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Inhibition of CRISPR-Cas9 with Bacteriophage Proteins. Cell. 2017 Jan 12; 168(1-2):150-158.e10.
Rauch BJ, Silvis MR, Hultquist JF, Waters CS, McGregor MJ, Krogan NJ, Bondy-Denomy J. PMID: 28041849; PMCID: PMC5235966.
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PubMed Mentions:
126 Fields:
Translation:
HumansCells
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Quorum sensing controls the Pseudomonas aeruginosa CRISPR-Cas adaptive immune system. Proc Natl Acad Sci U S A. 2017 01 03; 114(1):131-135.
Høyland-Kroghsbo NM, Paczkowski J, Mukherjee S, Broniewski J, Westra E, Bondy-Denomy J, Bassler BL. PMID: 27849583; PMCID: PMC5224376.
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PubMed Mentions:
60 Fields:
Translation:
Cells
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The solution structure of an anti-CRISPR protein. Nat Commun. 2016 10 11; 7:13134.
Maxwell KL, Garcia B, Bondy-Denomy J, Bona D, Hidalgo-Reyes Y, Davidson AR. PMID: 27725669; PMCID: PMC5062604.
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PubMed Mentions:
24 Fields:
Translation:
Cells
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Prophages mediate defense against phage infection through diverse mechanisms. ISME J. 2016 12; 10(12):2854-2866.
Bondy-Denomy J, Qian J, Westra ER, Buckling A, Guttman DS, Davidson AR, Maxwell KL. PMID: 27258950; PMCID: PMC5148200.
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PubMed Mentions:
82 Fields:
Translation:
Cells
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The diversity-generating benefits of a prokaryotic adaptive immune system. Nature. 2016 Apr 21; 532(7599):385-8.
van Houte S, Ekroth AK, Broniewski JM, Chabas H, Ashby B, Bondy-Denomy J, Gandon S, Boots M, Paterson S, Buckling A, Westra ER. PMID: 27074511; PMCID: PMC4935084.
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PubMed Mentions:
77 Fields:
Translation:
Cells
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Active and adaptive Legionella CRISPR-Cas reveals a recurrent challenge to the pathogen. Cell Microbiol. 2016 10; 18(10):1319-38.
Rao C, Guyard C, Pelaz C, Wasserscheid J, Bondy-Denomy J, Dewar K, Ensminger AW. PMID: 26936325; PMCID: PMC5071653.
View in:
PubMed Mentions:
15 Fields:
Translation:
AnimalsCells
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Foreign DNA acquisition by the I-F CRISPR-Cas system requires all components of the interference machinery. Nucleic Acids Res. 2015 Dec 15; 43(22):10848-60.
Vorontsova D, Datsenko KA, Medvedeva S, Bondy-Denomy J, Savitskaya EE, Pougach K, Logacheva M, Wiedenheft B, Davidson AR, Severinov K, Semenova E. PMID: 26586803; PMCID: PMC4678832.
View in:
PubMed Mentions:
37 Fields:
Translation:
Cells
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Multiple mechanisms for CRISPR-Cas inhibition by anti-CRISPR proteins. Nature. 2015 Oct 01; 526(7571):136-9.
Bondy-Denomy J, Garcia B, Strum S, Du M, Rollins MF, Hidalgo-Reyes Y, Wiedenheft B, Maxwell KL, Davidson AR. PMID: 26416740; PMCID: PMC4935067.
View in:
PubMed Mentions:
115 Fields:
Translation:
Cells
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Parasite Exposure Drives Selective Evolution of Constitutive versus Inducible Defense. Curr Biol. 2015 Apr 20; 25(8):1043-9.
Westra ER, van Houte S, Oyesiku-Blakemore S, Makin B, Broniewski JM, Best A, Bondy-Denomy J, Davidson A, Boots M, Buckling A. PMID: 25772450.
View in:
PubMed Mentions:
79 Fields:
Translation:
AnimalsCells
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A new group of phage anti-CRISPR genes inhibits the type I-E CRISPR-Cas system of Pseudomonas aeruginosa. mBio. 2014 Apr 15; 5(2):e00896.
Pawluk A, Bondy-Denomy J, Cheung VH, Maxwell KL, Davidson AR. PMID: 24736222; PMCID: PMC3993853.
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PubMed Mentions:
97 Fields:
Translation:
Cells
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When a virus is not a parasite: the beneficial effects of prophages on bacterial fitness. J Microbiol. 2014 Mar; 52(3):235-42.
Bondy-Denomy J, Davidson AR. PMID: 24585054.
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PubMed Mentions:
58 Fields:
Translation:
Cells
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To acquire or resist: the complex biological effects of CRISPR-Cas systems. Trends Microbiol. 2014 Apr; 22(4):218-25.
Bondy-Denomy J, Davidson AR. PMID: 24582529.
View in:
PubMed Mentions:
39 Fields:
Translation:
Cells
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Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system. Nature. 2013 Jan 17; 493(7432):429-32.
Bondy-Denomy J, Pawluk A, Maxwell KL, Davidson AR. PMID: 23242138; PMCID: PMC4931913.
View in:
PubMed Mentions:
234 Fields:
Translation:
Cells
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Efficacy of bacteriophage treatment on Pseudomonas aeruginosa biofilms. J Endod. 2013 Mar; 39(3):364-9.
Phee A, Bondy-Denomy J, Kishen A, Basrani B, Azarpazhooh A, Maxwell K. PMID: 23402508.
View in:
PubMed Mentions:
12 Fields:
Translation:
HumansCells
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The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages. J Bacteriol. 2012 Nov; 194(21):5728-38.
Cady KC, Bondy-Denomy J, Heussler GE, Davidson AR, O'Toole GA. PMID: 22885297; PMCID: PMC3486085.
View in:
PubMed Mentions:
115 Fields:
Translation:
Cells