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Turbolysis: A low-cost, small footprint alternative to commercial bead beaters for cell lysis. HardwareX. 2024 Sep; 19:e00576.
Limberis JD, Metcalfe JZ. PMID: 39280234; PMCID: PMC11402052.
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PubMed Mentions:
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Mycobacterium tuberculosis resides in lysosome-poor monocyte-derived lung cells during chronic infection. PLoS Pathog. 2024 May; 20(5):e1012205.
Zheng W, Chang IC, Limberis J, Budzik JM, Zha BS, Howard Z, Chen L, Ernst JD. PMID: 38701094; PMCID: PMC11095722.
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PubMed Mentions:
5 Fields:
Translation:
HumansAnimalsCells
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primerJinn: a tool for rationally designing multiplex PCR primer sets for amplicon sequencing and performing in silico PCR. BMC Bioinformatics. 2023 Dec 12; 24(1):468.
Limberis JD, Metcalfe JZ. PMID: 38082220; PMCID: PMC10714587.
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PubMed Mentions:
1 Fields:
Translation:
Cells
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selSeq: A method for the enrichment of non-polyadenylated RNAs including enhancer and long non-coding RNAs for sequencing. PLoS One. 2023; 18(11):e0289442.
Limberis JD, Nalyvayko A, Ernst JD, Metcalfe JZ. PMID: 38015898; PMCID: PMC10684010.
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PubMed Mentions:
1 Fields:
Translation:
Cells
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Bedaquiline resistance in patients with drug-resistant tuberculosis in Cape Town, South Africa: a retrospective longitudinal cohort study. Lancet Microbe. 2023 12; 4(12):e972-e982.
Derendinger B, Dippenaar A, de Vos M, Huo S, Alberts R, Tadokera R, Limberis J, Sirgel F, Dolby T, Spies C, Reuter A, Folkerts M, Allender C, Lemmer D, Van Rie A, Gagneux S, Rigouts L, Te Riele J, Dheda K, Engelthaler DM, Warren R, Metcalfe J, Cox H, Theron G. PMID: 37931638; PMCID: PMC10842724.
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PubMed Mentions:
9 Fields:
Translation:
HumansCells
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A simple, single-tube overlapping amplicon-targeted Illumina sequencing assay. PLoS One. 2023; 18(9):e0288687.
Limberis JD, Nalyvayko A, Ernst JD, Metcalfe JZ. PMID: 37708184; PMCID: PMC10501585.
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PubMed Mentions: Fields:
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primerJinn - a tool for rationally designing multiplex PCR primer sets and in silico PCR. Res Sq. 2023 Jun 26.
Limberis JD, Metcalfe JZ. PMID: 37461503; PMCID: PMC10350116.
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PubMed Mentions:
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Mycobacterium tuberculosis resides in lysosome-poor monocyte-derived lung cells during chronic infection. Res Sq. 2023 Jun 15.
Zheng W, Chang IC, Limberis J, Budzik J, Zha BS, Howard Z, Chen L, Ernst J. PMID: 37398178; PMCID: PMC10312915.
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PubMed Mentions:
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Mycobacterium tuberculosis resides in lysosome-poor monocyte-derived lung cells during chronic infection. bioRxiv. 2023 May 28.
Zheng W, Chang IC, Limberis J, Budzik JM, Zha BS, Howard Z, Chen L, Ernst JD. PMID: 36711606; PMCID: PMC9882350.
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PubMed Mentions:
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Circularization of rv0678 for Genotypic Bedaquiline Resistance Testing of Mycobacterium tuberculosis. Microbiol Spectr. 2023 Mar 06; e0412722.
Limberis JD, Nalyvayko A, Ernst JD, Metcalfe JZ. PMID: 36877083; PMCID: PMC10100719.
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PubMed Mentions:
1 Fields:
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Comparative Performance of Genomic Methods for the Detection of Pyrazinamide Resistance and Heteroresistance in Mycobacterium tuberculosis. J Clin Microbiol. 2022 01 19; 60(1):e0190721.
Whitfield MG, Engelthaler DM, Allender C, Folkerts M, Heupink TH, Limberis J, Warren RM, Van Rie A, Metcalfe JZ. PMID: 34757831; PMCID: PMC8769725.
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PubMed Mentions:
4 Fields:
Translation:
HumansCells
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Genetic variants and their association with phenotypic resistance to bedaquiline in Mycobacterium tuberculosis: a systematic review and individual isolate data analysis. Lancet Microbe. 2021 11; 2(11):e604-e616.
Ismail N, Rivière E, Limberis J, Huo S, Metcalfe JZ, Warren RM, Van Rie A. PMID: 34796339; PMCID: PMC8597953.
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PubMed Mentions:
25 Fields:
Translation:
HumansAnimalsCells
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Anaerobe-enriched gut microbiota predicts pro-inflammatory responses in pulmonary tuberculosis. EBioMedicine. 2021 May; 67:103374.
Naidoo CC, Nyawo GR, Sulaiman I, Wu BG, Turner CT, Bu K, Palmer Z, Li Y, Reeve BWP, Moodley S, Jackson JG, Limberis J, Diacon AH, van Helden PD, Clemente JC, Warren RM, Noursadeghi M, Segal LN, Theron G. PMID: 33975252; PMCID: PMC8122180.
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PubMed Mentions:
22 Fields:
Translation:
HumansCells
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Bacterial and host determinants of cough aerosol culture positivity in patients with drug-resistant versus drug-susceptible tuberculosis. Nat Med. 2020 09; 26(9):1435-1443.
Theron G, Limberis J, Venter R, Smith L, Pietersen E, Esmail A, Calligaro G, Te Riele J, de Kock M, van Helden P, Gumbo T, Clark TG, Fennelly K, Warren R, Dheda K. PMID: 32601338; PMCID: PMC8353872.
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PubMed Mentions:
25 Fields:
Translation:
HumansCells
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A Human Lung Challenge Model to Evaluate the Safety and Immunogenicity of PPD and Live Bacillus Calmette-Guérin. Am J Respir Crit Care Med. 2020 05 15; 201(10):1277-1291.
Davids M, Pooran A, Hermann C, Mottay L, Thompson F, Cardenas J, Gu J, Koeuth T, Meldau R, Limberis J, Gina P, Srivastava S, Calder B, Esmail A, Tomasicchio M, Blackburn J, Gumbo T, Dheda K. PMID: 31860339.
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PubMed Mentions:
23 Fields:
Translation:
Humans
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Differential RD-1-specific IFN-γ host responses to diverse Mycobacterium tuberculosis strains in HIV-uninfected persons may be explained by genotypic variation in the ESX-1 region. Int J Infect Dis. 2020 Jul; 96:240-243.
Tomasicchio M, Limberis J, van der Merwe R, Jacobson R, Meldau R, Theron G, Nicol M, Warren R, Dheda K. PMID: 32339714.
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PubMed Mentions: Fields:
Translation:
HumansCells
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A landscape of genomic alterations at the root of a near-untreatable tuberculosis epidemic. BMC Med. 2020 02 04; 18(1):24.
Klopper M, Heupink TH, Hill-Cawthorne G, Streicher EM, Dippenaar A, de Vos M, Abdallah AM, Limberis J, Merker M, Burns S, Niemann S, Dheda K, Posey J, Pain A, Warren RM. PMID: 32014024; PMCID: PMC6998097.
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PubMed Mentions:
18 Fields:
Translation:
HumansPHPublic Health
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A regimen containing bedaquiline and delamanid compared to bedaquiline in patients with drug-resistant tuberculosis. Eur Respir J. 2020 01; 55(1).
Olayanju O, Esmail A, Limberis J, Dheda K. PMID: 31619478.
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PubMed Mentions:
16 Fields:
Translation:
Humans
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Same-Day Tools, Including Xpert Ultra and IRISA-TB, for Rapid Diagnosis of Pleural Tuberculosis: a Prospective Observational Study. J Clin Microbiol. 2019 09; 57(9).
Meldau R, Randall P, Pooran A, Limberis J, Makambwa E, Dhansay M, Esmail A, Dheda K. PMID: 31270183; PMCID: PMC6711909.
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PubMed Mentions:
18 Fields:
Translation:
Humans
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Linezolid interruption in patients with fluoroquinolone-resistant tuberculosis receiving a bedaquiline-based treatment regimen. Int J Infect Dis. 2019 Aug; 85:74-79.
Olayanju O, Esmail A, Limberis J, Gina P, Dheda K. PMID: 31100421.
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PubMed Mentions:
13 Fields:
Translation:
Humans
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Long-term bedaquiline-related treatment outcomes in patients with extensively drug-resistant tuberculosis from South Africa. Eur Respir J. 2018 05; 51(5).
Olayanju O, Limberis J, Esmail A, Oelofse S, Gina P, Pietersen E, Fadul M, Warren R, Dheda K. PMID: 29700106.
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PubMed Mentions:
46 Fields:
Translation:
Humans
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Outcomes, infectiousness, and transmission dynamics of patients with extensively drug-resistant tuberculosis and home-discharged patients with programmatically incurable tuberculosis: a prospective cohort study. Lancet Respir Med. 2017 04; 5(4):269-281.
Dheda K, Limberis JD, Pietersen E, Phelan J, Esmail A, Lesosky M, Fennelly KP, Te Riele J, Mastrapa B, Streicher EM, Dolby T, Abdallah AM, Ben-Rached F, Simpson J, Smith L, Gumbo T, van Helden P, Sirgel FA, McNerney R, Theron G, Pain A, Clark TG, Warren RM. PMID: 28109869.
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PubMed Mentions:
59 Fields:
Translation:
HumansCells
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Selected questions and controversies about bedaquiline: a view from the field. Int J Tuberc Lung Dis. 2016 12 01; 20(12):24-32.
Dheda K, Esmail A, Limberis J, Maartens G. PMID: 28240569.
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PubMed Mentions:
3 Fields:
Translation:
Humans
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Xpert MTB/RIF Results in Patients With Previous Tuberculosis: Can We Distinguish True From False Positive Results? Clin Infect Dis. 2016 Apr 15; 62(8):995-1001.
Theron G, Venter R, Calligaro G, Smith L, Limberis J, Meldau R, Chanda D, Esmail A, Peter J, Dheda K. PMID: 26908793; PMCID: PMC4803105.
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PubMed Mentions:
60 Fields:
Translation:
HumansCells