Jonathan Budzik, MD, PhD

Title(s)Assistant Professor, Medicine
SchoolSchool of Medicine
Address505 Parnassus Avenue
San Francisco CA 94117
Phone415-476-0735
ORCID ORCID Icon0000-0001-8025-7911 Additional info
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    Collapse Biography 
    Collapse Education and Training
    University of California, San Francisco, CA2020Diversity, Equity, and Inclusion Champion Training
    University of California, San Francisco, CA2017Pulmonary and Critical Care Medicine Fellowship
    University of California, San Francisco, CA2014Internal Medicine Residency
    University of Chicago, Chicago, ILMD2011Medicine
    University of Chicago, Chicago, ILPhD2009Microbiology

    Collapse Research 
    Collapse Research Activities and Funding
    Controlling the switch between environmental & virulence programs of NTM
    Cystic Fibrosis Foundation Harry Shwachman Clinical Investigator AwardJul 1, 2019 - Jun 30, 2020
    Deciphering the role of autophagy receptor phosphorylation and host kinases in the targeting of M. tuberculosis to autophagy
    NIH K08AI146267May 15, 2019 - Apr 30, 2024
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Efficient generation of isogenic primary human myeloid cells using CRISPR-Cas9 ribonucleoproteins. Cell Rep. 2021 May 11; 35(6):109105. Hiatt J, Cavero DA, McGregor MJ, Zheng W, Budzik JM, Roth TL, Haas KM, Wu D, Rathore U, Meyer-Franke A, Bouzidi MS, Shifrut E, Lee Y, Kumar VE, Dang EV, Gordon DE, Wojcechowskyj JA, Hultquist JF, Fontaine KA, Pillai SK, Cox JS, Ernst JD, Krogan NJ, Marson A. PMID: 33979618.
      View in: PubMed   Mentions:    Fields:    
    2. Antibiotic adverse reactions in adult cystic fibrosis patients. J Allergy Clin Immunol Pract. 2020 Nov - Dec; 8(10):3631-3633.e1. Anstey KM, Lee M, Dawson D, Jue V, Budzik JM, Yu M, Kleinhenz ME, Otani IM. PMID: 32673878.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    3. Dynamic post-translational modification profiling of Mycobacterium tuberculosis-infected primary macrophages. Elife. 2020 01 17; 9. Budzik JM, Swaney DL, Jimenez-Morales D, Johnson JR, Garelis NE, Repasy T, Roberts AW, Popov LM, Parry TJ, Pratt D, Ideker T, Krogan NJ, Cox JS. PMID: 31951200.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    4. Pyrazinamide resistance, Mycobacterium tuberculosis lineage and treatment outcomes in San Francisco, California. PLoS One. 2014; 9(4):e95645. Budzik JM, Jarlsberg LG, Higashi J, Grinsdale J, Hopewell PC, Kato-Maeda M, Nahid P. PMID: 24759760.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    5. Isopeptide bonds of the major pilin protein BcpA influence pilus structure and bundle formation on the surface of Bacillus cereus. Mol Microbiol. 2012 Jul; 85(1):152-63. Hendrickx AP, Poor CB, Jureller JE, Budzik JM, He C, Schneewind O. PMID: 22624947.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    6. Disseminated Nocardia farcinica: literature review and fatal outcome in an immunocompetent patient. Surg Infect (Larchmt). 2012 Jun; 13(3):163-70. Budzik JM, Hosseini M, Mackinnon AC, Taxy JB. PMID: 22612440.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    7. Two capsular polysaccharides enable Bacillus cereus G9241 to cause anthrax-like disease. Mol Microbiol. 2011 Apr; 80(2):455-70. Oh SY, Budzik JM, Garufi G, Schneewind O. PMID: 21371137.
      View in: PubMed   Mentions: 31     Fields:    Translation:AnimalsCells
    8. Architects at the bacterial surface - sortases and the assembly of pili with isopeptide bonds. Nat Rev Microbiol. 2011 Mar; 9(3):166-76. Hendrickx AP, Budzik JM, Oh SY, Schneewind O. PMID: 21326273.
      View in: PubMed   Mentions: 103     Fields:    Translation:Cells
    9. Intramolecular amide bonds stabilize pili on the surface of bacilli. Proc Natl Acad Sci U S A. 2009 Nov 24; 106(47):19992-7. Budzik JM, Poor CB, Faull KF, Whitelegge JP, He C, Schneewind O. PMID: 19903875.
      View in: PubMed   Mentions: 36     Fields:    Translation:Cells
    10. Sortase D forms the covalent bond that links BcpB to the tip of Bacillus cereus pili. J Biol Chem. 2009 May 08; 284(19):12989-97. Budzik JM, Oh SY, Schneewind O. PMID: 19269972.
      View in: PubMed   Mentions: 23     Fields:    Translation:Cells
    11. Capsule anchoring in Bacillus anthracis occurs by a transpeptidation reaction that is inhibited by capsidin. Mol Microbiol. 2009 Jan; 71(2):404-20. Richter S, Anderson VJ, Garufi G, Lu L, Budzik JM, Joachimiak A, He C, Schneewind O, Missiakas D. PMID: 19017271.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    12. Cell wall anchor structure of BcpA pili in Bacillus anthracis. J Biol Chem. 2008 Dec 26; 283(52):36676-86. Budzik JM, Oh SY, Schneewind O. PMID: 18940793.
      View in: PubMed   Mentions: 26     Fields:    Translation:Cells
    13. Sortases make pili from three ingredients. Proc Natl Acad Sci U S A. 2008 Sep 16; 105(37):13703-4. Oh SY, Budzik JM, Schneewind O. PMID: 18784365.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    14. Amide bonds assemble pili on the surface of bacilli. Proc Natl Acad Sci U S A. 2008 Jul 22; 105(29):10215-20. Budzik JM, Marraffini LA, Souda P, Whitelegge JP, Faull KF, Schneewind O. PMID: 18621716.
      View in: PubMed   Mentions: 38     Fields:    Translation:Cells
    15. Assembly of pili on the surface of Bacillus cereus vegetative cells. Mol Microbiol. 2007 Oct; 66(2):495-510. Budzik JM, Marraffini LA, Schneewind O. PMID: 17897374.
      View in: PubMed   Mentions: 55     Fields:    Translation:Cells
    16. Pili prove pertinent to enterococcal endocarditis. J Clin Invest. 2006 Oct; 116(10):2582-4. Budzik JM, Schneewind O. PMID: 17016552.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    17. Isolation and characterization of a generalized transducing phage for Pseudomonas aeruginosa strains PAO1 and PA14. J Bacteriol. 2004 May; 186(10):3270-3. Budzik JM, Rosche WA, Rietsch A, O'Toole GA. PMID: 15126493.
      View in: PubMed   Mentions: 33     Fields:    Translation:Cells
    18. The role of bacterial biofilms in ocular infections. DNA Cell Biol. 2002 May-Jun; 21(5-6):415-20. Zegans ME, Becker HI, Budzik J, O'Toole G. PMID: 12167244.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCells
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