Joshua Berke, PhD

Title(s)Professor, Neurology
SchoolSchool of Medicine
Address1651 4th Street, #411E
San Francisco CA 94158
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    Other Positions
    Title(s)UCSF Weill Institute for Neurosciences

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    Josh Berke's laboratory at UCSF investigates brain mechanisms involved in learning, motivation and decision-making, and how these mechanisms go awry in disorders such as drug addiction, Parkinson's Disease and Huntington's Disease. (see He is also Director of the Alcohol and Addiction Research Group, and holds the Rudi Schmid Distinguished Professorship in Neurology.
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    Striatal Microcircuit Dynamics
    NIH R01NS123516Jul 1, 2021 - Jun 30, 2026
    Role: Principal Investigator
    Neural mechanisms linking need to reward
    NIH R01NS116626Aug 1, 2020 - Jul 31, 2023
    Role: Co-Principal Investigator
    Encoding and regulation of compulsion-like alcohol drinking by subtypes of nucleus accumbens core neurons
    NIH R21AA027157Jul 1, 2018 - Jun 30, 2020
    Role: Principal Investigator
    Assessment of Striatal Indirect Pathway Function in Normal and HD Rats
    CHDI May 1, 2018 - Apr 30, 2021
    Role: Principal Investigator
    Dopaminergic mechanisms for motivation and reinforcement learning
    NIH/NIDA R01DA045783Apr 15, 2018 - Mar 31, 2023
    Dopaminergic mechanisms for motivation and reinforcement learning
    NIH R01DA045783Apr 15, 2018 - Mar 31, 2023
    Role: Principal Investigator
    Carbon Thread Arrays for High Resolution Multi-Modal Analysis of Microcircuits
    NIH U01NS094375Sep 30, 2015 - Jul 31, 2019
    Role: Co-Principal Investigator
    Basal Ganglia Pathways for Stopping and Switching
    NIH R01MH101697Sep 26, 2013 - Jul 31, 2018
    Role: Principal Investigator
    Striatal Microcircuits: Regulation and Function
    NIH R01NS078435Jun 15, 2012 - May 31, 2018
    Role: Principal Investigator
    Reinforcement Learning and Striatal Patch/Matrix Architecture
    NIH R21DA032259Jun 1, 2011 - May 31, 2014
    Role: Principal Investigator
    Combining optogenetics and electrophysiology to dissect accumbens microcircuits
    NIH R21MH093888May 20, 2011 - Apr 30, 2014
    Role: Principal Investigator
    Multiple Memory Systems in Action Selection
    NIH R01DA014318Aug 1, 2001 - Jul 31, 2007
    Role: Principal Investigator
    NIH F32MH012908Sep 29, 2000
    Role: Principal Investigator

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    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    1. Dual credit assignment processes underlie dopamine signals in a complex spatial environment. bioRxiv. 2023 Mar 19. Krausz TA, Comrie AE, Frank LM, Daw ND, Berke JD. PMID: 36993482; PMCID: PMC10054934.
      View in: PubMed   Mentions:
    2. Altered basal ganglia output during self-restraint. Elife. 2022 11 02; 11. Gu BM, Berke JD. PMID: 36321810; PMCID: PMC9665843.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    3. Dopamine subsystems that track internal states. Nature. 2022 08; 608(7922):374-380. Grove JCR, Gray LA, La Santa Medina N, Sivakumar N, Ahn JS, Corpuz TV, Berke JD, Kreitzer AC, Knight ZA. PMID: 35831501; PMCID: PMC9365689.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    4. Coupling between motor cortex and striatum increases during sleep over long-term skill learning. Elife. 2021 09 10; 10. Lemke SM, Ramanathan DS, Darevksy D, Egert D, Berke JD, Ganguly K. PMID: 34505576; PMCID: PMC8439654.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    5. Improved inference in coupling, encoding, and decoding models and its consequence for neuroscientific interpretation. J Neurosci Methods. 2021 07 01; 358:109195. Sachdeva PS, Livezey JA, Dougherty ME, Gu BM, Berke JD, Bouchard KE. PMID: 33905791.
      View in: PubMed   Mentions:    Fields:    
    6. High density carbon fiber arrays for chronic electrophysiology, fast scan cyclic voltammetry, and correlative anatomy. J Neural Eng. 2020 10 15; 17(5):056029. Patel PR, Popov P, Caldwell CM, Welle EJ, Egert D, Pettibone JR, Roossien DH, Becker JB, Berke JD, Chestek CA, Cai D. PMID: 33055366.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    7. Cellular-scale silicon probes for high-density, precisely localized neurophysiology. J Neurophysiol. 2020 12 01; 124(6):1578-1587. Egert D, Pettibone JR, Lemke S, Patel PR, Caldwell CM, Cai D, Ganguly K, Chestek CA, Berke JD. PMID: 32965150; PMCID: PMC7814906.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    8. An expanded palette of dopamine sensors for multiplex imaging in vivo. Nat Methods. 2020 11; 17(11):1147-1155. Patriarchi T, Mohebi A, Sun J, Marley A, Liang R, Dong C, Puhger K, Mizuno GO, Davis CM, Wiltgen B, von Zastrow M, Berke JD, Tian L. PMID: 32895537; PMCID: PMC8169200.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansAnimalsCells
    9. Globus pallidus dynamics reveal covert strategies for behavioral inhibition. Elife. 2020 06 10; 9. Gu BM, Schmidt R, Berke JD. PMID: 32519952; PMCID: PMC7314538.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    10. The Degree of Nesting between Spindles and Slow Oscillations Modulates Neural Synchrony. J Neurosci. 2020 06 10; 40(24):4673-4684. Silversmith DB, Lemke SM, Egert D, Berke JD, Ganguly K. PMID: 32371605; PMCID: PMC7294805.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    11. Dopamine release drives motivation, independently from dopamine cell firing. Neuropsychopharmacology. 2020 01; 45(1):220. Mohebi A, Berke JD. PMID: 31462753; PMCID: PMC6879472.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    12. Knock-In Rat Lines with Cre Recombinase at the Dopamine D1 and Adenosine 2a Receptor Loci. eNeuro. 2019 Sep/Oct; 6(5). Pettibone JR, Yu JY, Derman RC, Faust TW, Hughes ED, Filipiak WE, Saunders TL, Ferrario CR, Berke JD. PMID: 31451604; PMCID: PMC6776791.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    13. Publisher Correction: Dissociable dopamine dynamics for learning and motivation. Nature. 2019 Jul; 571(7763):E3. Mohebi A, Pettibone JR, Hamid AA, Wong JT, Vinson LT, Patriarchi T, Tian L, Kennedy RT, Berke JD. PMID: 31217588.
      View in: PubMed   Mentions: 4     Fields:    
    14. Dissociable dopamine dynamics for learning and motivation. Nature. 2019 06; 570(7759):65-70. Mohebi A, Pettibone JR, Hamid AA, Wong JT, Vinson LT, Patriarchi T, Tian L, Kennedy RT, Berke JD. PMID: 31118513; PMCID: PMC6555489.
      View in: PubMed   Mentions: 167     Fields:    Translation:AnimalsCells
    15. What does dopamine mean? Nat Neurosci. 2018 06; 21(6):787-793. Berke JD. PMID: 29760524; PMCID: PMC6358212.
      View in: PubMed   Mentions: 208     Fields:    Translation:HumansAnimalsCells
    16. Fast-Spiking Interneurons Supply Feedforward Control of Bursting, Calcium, and Plasticity for Efficient Learning. Cell. 2018 02 08; 172(4):683-695.e15. Owen SF, Berke JD, Kreitzer AC. PMID: 29425490; PMCID: PMC5810594.
      View in: PubMed   Mentions: 60     Fields:    Translation:AnimalsCells
    17. Sensorimotor Processing in the Basal Ganglia Leads to Transient Beta Oscillations during Behavior. J Neurosci. 2017 11 15; 37(46):11220-11232. Mirzaei A, Kumar A, Leventhal D, Mallet N, Aertsen A, Berke J, Schmidt R. PMID: 29038241; PMCID: PMC6596813.
      View in: PubMed   Mentions: 17     Fields:    Translation:Animals
    18. (Invited) Carbon Fiber Electrode Array for the Detection of Electrophysiological and Dopaminergic Activity. ECS Meeting Abstracts. 2017 Sep 1; MA2017-02(55):2311-2311. Patel PP, Popov PP, Mohebi MA, Hamid HA, Pettibone PJ, Roossien RD, Aragona AB, Cai CD, Berke BJ, Chestek CC. .
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    19. A Pause-then-Cancel model of stopping: evidence from basal ganglia neurophysiology. Philos Trans R Soc Lond B Biol Sci. 2017 Apr 19; 372(1718). Schmidt R, Berke JD. PMID: 28242736; PMCID: PMC5332861.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimals
    20. Acetylcholine Release in Prefrontal Cortex Promotes Gamma Oscillations and Theta-Gamma Coupling during Cue Detection. J Neurosci. 2017 03 22; 37(12):3215-3230. Howe WM, Gritton HJ, Lusk NA, Roberts EA, Hetrick VL, Berke JD, Sarter M. PMID: 28213446; PMCID: PMC5373115.
      View in: PubMed   Mentions: 53     Fields:    Translation:AnimalsCells
    21. Cell Assembly Dynamics of Sparsely-Connected Inhibitory Networks: A Simple Model for the Collective Activity of Striatal Projection Neurons. PLoS Comput Biol. 2016 Feb; 12(2):e1004778. Angulo-Garcia D, Berke JD, Torcini A. PMID: 26915024; PMCID: PMC4767417.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    22. Arkypallidal Cells Send a Stop Signal to Striatum. Neuron. 2016 Jan 20; 89(2):308-16. Mallet N, Schmidt R, Leventhal D, Chen F, Amer N, Boraud T, Berke JD. PMID: 26777273; PMCID: PMC4871723.
      View in: PubMed   Mentions: 76     Fields:    Translation:AnimalsCells
    23. Cortical cholinergic signaling controls the detection of cues. Proc Natl Acad Sci U S A. 2016 Feb 23; 113(8):E1089-97. Gritton HJ, Howe WM, Mallory CS, Hetrick VL, Berke JD, Sarter M. PMID: 26787867; PMCID: PMC4776505.
      View in: PubMed   Mentions: 85     Fields:    Translation:AnimalsCells
    24. Cell assembly dynamics of sparse inhibitory networks: a simple model for the activity of the Medium Spiny Neurons. BMC Neuroscience. 2015 Dec 1; 16(Suppl 1):p14. Angulo-Garcia AD, Torcini TA, Berke BJ. .
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    25. Mesolimbic dopamine signals the value of work. Nat Neurosci. 2016 Jan; 19(1):117-26. Hamid AA, Pettibone JR, Mabrouk OS, Hetrick VL, Schmidt R, Vander Weele CM, Kennedy RT, Aragona BJ, Berke JD. PMID: 26595651; PMCID: PMC4696912.
      View in: PubMed   Mentions: 288     Fields:    Translation:Animals
    26. Silk-Backed Structural Optimization of High-Density Flexible Intracortical Neural Probes. Journal of Microelectromechanical Systems. 2015 Feb 1; 24(1):62-69. Wu WF, Tien TL, Chen CF, Berke BJ, Kaplan KD, Yoon YE. .
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    27. Silk-backed structural optimization of high-density flexible intracortical neural probes. IEEE Journal on Microelectromechanical Systems. 2015; 24:62-69. Wu F, Tien LW, Chen F, Berke J, Kaplan DL, Yoon E.
    28. New roles for the external globus pallidus in basal ganglia circuits and behavior. J Neurosci. 2014 Nov 12; 34(46):15178-83. Gittis AH, Berke JD, Bevan MD, Chan CS, Mallet N, Morrow MM, Schmidt R. PMID: 25392486; PMCID: PMC4228126.
      View in: PubMed   Mentions: 52     Fields:    Translation:HumansAnimalsCells
    29. Dissociable effects of dopamine on learning and performance within sensorimotor striatum. Basal Ganglia. 2014 Jun 01; 4(2):43-54. Leventhal DK, Stoetzner C, Abraham R, Pettibone J, DeMarco K, Berke JD. PMID: 24949283; PMCID: PMC4058866.
      View in: PubMed   Mentions: 16  
    30. Control of basal ganglia output by direct and indirect pathway projection neurons. J Neurosci. 2013 Nov 20; 33(47):18531-9. Freeze BS, Kravitz AV, Hammack N, Berke JD, Kreitzer AC. PMID: 24259575; PMCID: PMC3834057.
      View in: PubMed   Mentions: 173     Fields:    Translation:AnimalsCells
    31. Canceling actions involves a race between basal ganglia pathways. Nat Neurosci. 2013 Aug; 16(8):1118-24. Schmidt R, Leventhal DK, Mallet N, Chen F, Berke JD. PMID: 23852117; PMCID: PMC3733500.
      View in: PubMed   Mentions: 177     Fields:    Translation:Animals
    32. Basal ganglia beta oscillations accompany cue utilization. Neuron. 2012 Feb 09; 73(3):523-36. Leventhal DK, Gage GJ, Schmidt R, Pettibone JR, Case AC, Berke JD. PMID: 22325204; PMCID: PMC3463873.
      View in: PubMed   Mentions: 151     Fields:    Translation:Animals
    33. Selective inhibition of striatal fast-spiking interneurons causes dyskinesias. J Neurosci. 2011 Nov 02; 31(44):15727-31. Gittis AH, Leventhal DK, Fensterheim BA, Pettibone JR, Berke JD, Kreitzer AC. PMID: 22049415; PMCID: PMC3226784.
      View in: PubMed   Mentions: 96     Fields:    Translation:AnimalsCells
    34. Investigating striatal function through cell-type-specific manipulations. Neuroscience. 2011 Dec 15; 198:19-26. Kreitzer AC, Berke JD. PMID: 21867745; PMCID: PMC3221791.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    35. Striatal fast-spiking interneurons: from firing patterns to postsynaptic impact. Front Syst Neurosci. 2011; 5:57. Klaus A, Planert H, Hjorth JJ, Berke JD, Silberberg G, Kotaleski JH. PMID: 21808608; PMCID: PMC3139213.
      View in: PubMed   Mentions: 21  
    36. Functional properties of striatal fast-spiking interneurons. Front Syst Neurosci. 2011; 5:45. Berke JD. PMID: 21743805; PMCID: PMC3121016.
      View in: PubMed   Mentions: 69  
    37. Integrating early results on ventral striatal gamma oscillations in the rat. Front Neurosci. 2010; 4:300. van der Meer MA, Kalenscher T, Lansink CS, Pennartz CM, Berke JD, Redish AD. PMID: 21350600; PMCID: PMC3039412.
      View in: PubMed   Mentions: 42  
    38. Selective activation of striatal fast-spiking interneurons during choice execution. Neuron. 2010 Aug 12; 67(3):466-79. Gage GJ, Stoetzner CR, Wiltschko AB, Berke JD. PMID: 20696383; PMCID: PMC2920892.
      View in: PubMed   Mentions: 130     Fields:    Translation:AnimalsCells
    39. Single-unit activity in the medial prefrontal cortex during immediate and delayed extinction of fear in rats. PLoS One. 2010 Aug 05; 5(8):e11971. Chang CH, Berke JD, Maren S. PMID: 20700483; PMCID: PMC2916837.
      View in: PubMed   Mentions: 62     Fields:    Translation:AnimalsCells
    40. Memory formation: from network structure to neural dynamics. Philos Trans A Math Phys Eng Sci. 2010 May 13; 368(1918):2251-67. Feldt S, Wang JX, Hetrick VL, Berke JD, Zochowski M. PMID: 20368245; PMCID: PMC5792550.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    41. Local dynamics of gap-junction-coupled interneuron networks. Phys Biol. 2010 Mar 12; 7:16015. Lau T, Gage GJ, Berke JD, Zochowski M. PMID: 20228446; PMCID: PMC2896010.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    42. Opposite effects of stimulant and antipsychotic drugs on striatal fast-spiking interneurons. Neuropsychopharmacology. 2010 May; 35(6):1261-70. Wiltschko AB, Pettibone JR, Berke JD. PMID: 20090670; PMCID: PMC3055348.
      View in: PubMed   Mentions: 41     Fields:    Translation:AnimalsCells
    43. State-dependent plasticity of the corticostriatal pathway. Neuroscience. 2010 Feb 17; 165(4):1013-8. Stoetzner CR, Pettibone JR, Berke JD. PMID: 19932155; PMCID: PMC2814943.
      View in: PubMed   Mentions: 13     Fields:    Translation:Animals
    44. Corticostriatal Interactions during Learning, Memory Processing, and Decision Making. J Neurosci. 2009 Oct 14; 29(41):12831-8. Pennartz CM, Berke JD, Graybiel AM, Ito R, Lansink CS, van der Meer M, Redish AD, Smith KS, Voorn P. PMID: 19828796; PMCID: PMC3849625.
      View in: PubMed   Mentions: 94     Fields:    Translation:HumansAnimals
    45. Striatal interneurons and reward prediction errors (Commentary on Apicella et al.). Eur J Neurosci. 2009 Aug; 30(3):514. Berke JD. PMID: 19686434.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    46. Fast oscillations in cortical-striatal networks switch frequency following rewarding events and stimulant drugs. Eur J Neurosci. 2009 Sep; 30(5):848-59. Berke JD. PMID: 19659455; PMCID: PMC2778242.
      View in: PubMed   Mentions: 102     Fields:    Translation:AnimalsCells
    47. Functional clustering algorithm for the analysis of dynamic network data. Phys Rev E Stat Nonlin Soft Matter Phys. 2009 May; 79(5 Pt 2):056104. Feldt S, Waddell J, Hetrick VL, Berke JD, Zochowski M. PMID: 19518518; PMCID: PMC2814878.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    48. Striatal versus hippocampal representations during win-stay maze performance. J Neurophysiol. 2009 Mar; 101(3):1575-87. Berke JD, Breck JT, Eichenbaum H. PMID: 19144741; PMCID: PMC2666400.
      View in: PubMed   Mentions: 56     Fields:    Translation:AnimalsCells
    49. Procedural Learning: Striatum. Encyclopedia of Neuroscience. 2009 Jan 1; (Neuron252000):1107-1116. Berke BJ. .
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    50. Uncoordinated firing rate changes of striatal fast-spiking interneurons during behavioral task performance. J Neurosci. 2008 Oct 01; 28(40):10075-80. Berke JD. PMID: 18829965; PMCID: PMC2613805.
      View in: PubMed   Mentions: 99     Fields:    Translation:AnimalsCells
    51. Functional structure from dynamic clustering of spike train data. BMC Neuroscience. 2008 Jul 1; 9(Suppl 1):p18. Feldt FS, Waddell WJ, Hetrick HV, Berke BJ, Zochowski ZM. .
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    52. Wavelet filtering before spike detection preserves waveform shape and enhances single-unit discrimination. J Neurosci Methods. 2008 Aug 15; 173(1):34-40. Wiltschko AB, Gage GJ, Berke JD. PMID: 18597853; PMCID: PMC2602872.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimals
    53. Transient 23-30 Hz oscillations in mouse hippocampus during exploration of novel environments. Hippocampus. 2008; 18(5):519-29. Berke JD, Hetrick V, Breck J, Greene RW. PMID: 18398852.
      View in: PubMed   Mentions: 45     Fields:    Translation:Animals
    54. The Homer-1 protein Ania-3 interacts with the plasma membrane calcium pump. Biochem Biophys Res Commun. 2006 May 05; 343(2):630-7. Sgambato-Faure V, Xiong Y, Berke JD, Hyman SE, Strehler EE. PMID: 16554037; PMCID: PMC3873836.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    55. Participation of Striatal Neurons in Large-Scale Oscillatory Networks. The Basal Ganglia VIII. 2005 Jan 1; 56:25-35. Berke BJ. .
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    56. Oscillatory Entrainment of Striatal Neurons in Freely Moving Rats. Neuron. 2004 Oct 1; 44(3):571. Berke BJ, Okatan OM, Skurski SJ, Eichenbaum EH. .
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    57. Oscillatory entrainment of striatal neurons in freely moving rats. Neuron. 2004 Sep 16; 43(6):883-96. Berke JD, Okatan M, Skurski J, Eichenbaum HB. PMID: 15363398.
      View in: PubMed   Mentions: 234     Fields:    Translation:AnimalsCells
    58. Analysis of mRNA expression in striatal tissue by differential display polymerase chain reaction. Methods Mol Med. 2003; 79:193-209. Berke JD. PMID: 12506698.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    59. Learning and memory mechanisms involved in compulsive drug use and relapse. Methods Mol Med. 2003; 79:75-101. Berke JD. PMID: 12506691.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimals
    60. Drug addiction and the hippocampus. Science. 2001 Nov 09; 294(5545):1235. Berke JD, Eichenbaum HB. PMID: 11701892.
      View in: PubMed   Mentions: 12     Fields:    Translation:Animals
    61. Dopamine and glutamate induce distinct striatal splice forms of Ania-6, an RNA polymerase II-associated cyclin. Neuron. 2001 Oct 25; 32(2):277-87. Berke JD, Sgambato V, Zhu PP, Lavoie B, Vincent M, Krause M, Hyman SE. PMID: 11683997.
      View in: PubMed   Mentions: 36     Fields:    Translation:AnimalsCells
    62. Addiction, dopamine, and the molecular mechanisms of memory. Neuron. 2000 Mar; 25(3):515-32. Berke JD, Hyman SE. PMID: 10774721.
      View in: PubMed   Mentions: 387     Fields:    Translation:HumansAnimals
    63. A complex program of striatal gene expression induced by dopaminergic stimulation. J Neurosci. 1998 Jul 15; 18(14):5301-10. Berke JD, Paletzki RF, Aronson GJ, Hyman SE, Gerfen CR. PMID: 9651213; PMCID: PMC6793476.
      View in: PubMed   Mentions: 87     Fields:    Translation:AnimalsCells
    64. Acute effects of cocaine on human brain activity and emotion. Neuron. 1997 Sep; 19(3):591-611. Breiter HC, Gollub RL, Weisskoff RM, Kennedy DN, Makris N, Berke JD, Goodman JM, Kantor HL, Gastfriend DR, Riorden JP, Mathew RT, Rosen BR, Hyman SE. PMID: 9331351.
      View in: PubMed   Mentions: 357     Fields:    Translation:HumansCTClinical Trials
    65. Molecular adaptations to psychostimulants in striatal neurons: toward a pathophysiology of addiction. Neurobiol Dis. 1997; 4(3-4):239-46. Genova L, Berke J, Hyman SE. PMID: 9361300.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    66. Activation of striatum and amygdala during reward conditioning: An FMRI study. NeuroImage. 1996 Jun 1; 3(3):s220. Breiter BH, Berke BJ, Kennedy KW, Rosen RB, Hyman HS. .
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