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Hayley Barnes, PhD, MPH, MBBS

Title(s)Associate Professor, Medicine
SchoolSchool of Medicine
Address505 Parnassus Avenue, #0
San Francisco CA 94117
PronounsShe/Her/Hers
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    Collapse Biography 
    Collapse education and training
    Monash UniversityBachelor of Biomedical Science (Honours)2005
    Bachelor of Medicine / Bachelor of SurgeryDeakin University2011
    St Vincent's Hospital, Melbourne, AustraliaInternship2013
    Royal Australasian College of PhysiciansPhysician Fellowship2018
    University of NewcastleMasters of Public Health2018
    Monash UniversityDoctor of Philosophy2021Improving diagnostic confidence in hypersensitivity pneumonitis
    Collapse awards and honors
    TSANZ2022  - 2022Thoracic Society of Australia and New Zealand Oral Session: Orphan Lung Diseases, Lung Transplant, Interstitial Lung Disease and Pulmonary Vascular Disease (OLIV) SIG Award
    American Thoracic Society2022  - 2022ATS Clinical Problems Abstract Travel Scholarship
    American Thoracic Society2020  - 2020ATS Clinical Problems Abstract Travel Scholarship
    PHSANZ2018  - 2018Pulmonary Hypertension Society of Australia and New Zealand Annual Scientific Meeting Best Poster Prize
    Alfred Health2018  - 2018Michael J Hall Prize for Research in the field of Respiratory Physiology
    Alfred Health2017  - 2017Alfred Senior Medical Staff Travelling Scholarship
    Alfred Health2016  - 2016Alfred Senior Medical Staff Travelling Scholarship
    Monash University2005  - 2005Nairn Medal for outstanding BBiomedSci thesis

    Collapse Overview 
    Collapse Clinical Trials

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Integrated human and mouse single-cell profiling reveals immune-stromal niche driving silicosis. Mucosal Immunol. 2026 Apr; 19(2):1822-1834. Begka C, Macowan M, Cardwell B, Dang AT, Daunt CP, Chatzis R, Barnes H, Pilcher D, Glaspole I, Hoy RF, Harris NL, Westall GP, Marsland BJ. PMID: 41520918.
      View in: PubMed   Mentions:
    2. Developing a Model of Health and Supportive Care for People with Silicosis in Australia. Ann Am Thorac Soc. 2026 Jan 01; 23(1):63-69. Tikellis G, Corte T, Hoy R, Barnes H, Rhodes J, Hore-Lacy F, Holland AE. PMID: 40824168.
      View in: PubMed   Mentions:
    3. Inhalational exposures associated with risk of interstitial lung disease: a systematic review and meta-analysis. Thorax. 2025 Nov 14; 80(12):918-926. Lee CT, Gandhi SA, Elmrayed S, Barnes H, Lorenzetti D, Salisbury ML, Stewart ID, Barber C, Peters CE, Feary J, Johannson KA. PMID: 40518258; PMCID: PMC12354187.
      View in: PubMed   Mentions:    Fields:    
    4. Respiratory symptoms, airflow obstruction and asthma in a cohort of workers from the stone benchtop industry. Occup Environ Med. 2025 Aug 25; 82(6):278-284. Tomic D, Hoy RF, Abramson MJ, Glass DC, Barnes H, Alamdari M, Sim MR, Walker-Bone K. PMID: 40754368.
      View in: PubMed   Mentions:
    5. Patient and healthcare professional perspectives on telehealth in the care of interstitial lung disease. Chron Respir Dis. 2025; 22:14799731251366945. Deshpande S, Tikellis G, Barnes H, Symons K, Holland AE, Glaspole I, Khor YH. PMID: 40820323; PMCID: PMC12361724.
      View in: PubMed   Mentions:
    6. Silicosis research priorities for health care, research, and health and safety professionals, and for people exposed to silica in Australia: a research priority setting exercise. Med J Aust. 2025 Sep 01; 223(5):257-264. Barnes H, Mathieu S, Glass DC, Sim MR, Fritschi L, Dickinson JL, Chambers DC, Driscoll TR, Edwards G, LaBranche N, Jones C, Bourke JE, Hoy RF, Jenkins CR, Apte S, Holland A, Tikellis G. PMID: 40734293; PMCID: PMC12399050.
      View in: PubMed   Mentions:
    7. Patient-reported outcome measures for cough used in interstitial lung disease: a systematic review. Eur Respir Rev. 2025 Jul; 34(177). Mann J, Barnes H, Lew J, Khor YH, Goh N, Holland AE. PMID: 40633974; PMCID: PMC12238875.
      View in: PubMed   Mentions:
    8. Approach to Lung Transplantation in Pulmonary Arterial Hypertension: A Delphi Consensus on Behalf of the Transplant Task Force of the Pulmonary Vascular Research Institute. Pulm Circ. 2025 Apr; 15(2):e70088. Kolaitis NA, Barnes H, Levine DJ, Castillo H, Arcasoy SM, Bacchetta M, Benvenuto L, Berman-Rosenzweig E, Cevasco M, Demarest CT, Dewachter C, Erasmus ME, Glanville AR, Granton J, Keshavjee S, Khangoora V, Krishnan S, Mercier O, Miltiades AN, Montani D, Murphy E, Robbins I, Rahaghi FF, Saddoughi SA, Savale L, Simon MA, Vachiery JL, Ventetuolo CE, Whitford HM, Girgis RE. PMID: 40276473; PMCID: PMC12018530.
      View in: PubMed   Mentions: 3  
    9. The Rapid Rise of Silicosis in Victoria, Australia Associated With Artificial Stone Countertop Industry Work. Am J Ind Med. 2025 Apr; 68(4):358-367. Hoy RF, Tomic D, Gwini S, Dimitriadis C, Abramson M, Collie A, Barnes H, Glass DC, Hore-Lacy F, Kinsman N, Sim MR, Walker-Bone K. PMID: 39829386; PMCID: PMC11898148.
      View in: PubMed   Mentions:
    10. Efficacy and safety of a whole lung lavage program for artificial stone silicosis. J Thorac Dis. 2024 Nov 30; 16(11):7630-7639. Barnes H, Pilcher D, Coull J, Sin J, Dabscheck E, Siemienowicz M, Pirakalathanan J, Khoo J, Sweeney D, McLean C, Pirakalathanan P, Eikelis N, Begka C, Westall G, Hoy R. PMID: 39678831; PMCID: PMC11635276.
      View in: PubMed   Mentions:
    11. Silicosis-Where to from here? Respirology. 2024 Dec; 29(12):1020-1022. Barnes H, Chambers DC. PMID: 39492568.
      View in: PubMed   Mentions:
    12. Iron Alters the Transcriptome and Volatile Organic Compounds in the BAL of Patients with Silicosis. Am J Respir Cell Mol Biol. 2024 Nov; 71(5):617-621. Aloe CA, Goh NSL, Wang H, McQualter JL, Doomun SNE, De Souza D, Pujari R, Papagianis PC, Apte SH, Barnes H, Vlahos R, McDonald CF, Hoy RF, Chambers DC, Leong TL, Bozinovski S. PMID: 39485079.
      View in: PubMed   Mentions:
    13. Diagnosis and management of hypersensitivity pneumonitis in adults: A position statement from the Thoracic Society of Australia and New Zealand. Respirology. 2024 Dec; 29(12):1023-1046. Barnes H, Corte TJ, Keir G, Khor YH, Limaye S, Wrobel JP, Veitch E, Harrington J, Dowman L, Beckert L, Milne D, De Losa R, Cooper WA, Bell PT, Balakrishnan P, Troy LK. PMID: 39467777.
      View in: PubMed   Mentions:
    14. Autoimmune diseases, autoantibody status and silicosis in a cohort of 1238 workers from the artificial stone benchtop industry. Occup Environ Med. 2024 Aug 29; 81(8):388-394. Tomic D, Hoy RF, Sin J, Jimenez Martin J, Gwini SM, Barnes H, Nikpour M, Morrisroe K, Lim YZ, Walker-Bone K. PMID: 39134395.
      View in: PubMed   Mentions:
    15. Current surgical management of chronic thromboembolic pulmonary disease. Intern Med J. 2024 Oct; 54(10):1616-1625. Barnes H, Niewodowski D, Doi A, Marasco S, Joseph T, Siemienowicz M, Keating D, Yo S, Kaye D, Williams T, McGiffin D, Whitford H. PMID: 39087843.
      View in: PubMed   Mentions:
    16. Steroid therapy in acute exacerbation of fibrotic interstitial lung disease. Respirology. 2024 09; 29(9):795-802. Koshy K, Barnes H, Farrand E, Glaspole I. PMID: 38825348.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    17. Chest x-ray has low sensitivity to detect silicosis in artificial stone benchtop industry workers. Respirology. 2024 Sep; 29(9):785-794. Hoy RF, Jones C, Newbigin K, Abramson MJ, Barnes H, Dimitriadis C, Ellis S, Glass DC, Gwini SM, Hore-Lacy F, Jimenez-Martin J, Pasricha SS, Pirakalathanan J, Siemienowicz M, Walker-Bone K, Sim MR. PMID: 38802282.
      View in: PubMed   Mentions:
    18. Scoping review of exposure questionnaires and surveys in interstitial lung disease. BMJ Open Respir Res. 2024 May 15; 11(1). Barnes H, Elmrayed S, Barber CM, Feary J, Lee CT, Gandhi S, Peters CE, Salisbury ML, Johannson KA. PMID: 38754906; PMCID: PMC11097806.
      View in: PubMed   Mentions: 2  Translation:HumansPHPublic Health
    19. Multidisciplinary meeting review in nonsmall cell lung cancer: a systematic review and meta-analysis. Eur Respir Rev. 2024 Apr 30; 33(172). Stirling RG, Harrison A, Huang J, Lee V, Taverner J, Barnes H. PMID: 38719736; PMCID: PMC11078104.
      View in: PubMed   Mentions:
    20. Nintedanib Therapy Alone and Combined with Mycophenolate in Patients with Systemic Sclerosis-associated Interstitial Lung Disease: Systematic Reviews and Meta-analysis. Ann Am Thorac Soc. 2024 Mar; 21(3):474-485. Herman D, Ghazipura M, Barnes H, Macrea M, Knight SL, Silver RM, Montesi SB, Raghu G, Hossain T. PMID: 37773000; PMCID: PMC12039928.
      View in: PubMed   Mentions:
    21. Changing trends in mesothelioma: Important lessons for an occupational disease registry. Respirology. 2024 Apr; 29(4):269-270. Barnes H, Hoy RF. PMID: 38404135.
      View in: PubMed   Mentions:
    22. Rituximab in Patients with Systemic Sclerosis-associated Interstitial Lung Disease: A Systematic Review and Meta-Analysis. Ann Am Thorac Soc. 2024 Feb; 21(2):317-327. Macrea M, Ghazipura M, Herman D, Barnes H, Knight SL, Silver RM, Montesi SB, Raghu G, Hossain T. PMID: 37772987; PMCID: PMC12042948.
      View in: PubMed   Mentions:
    23. Tocilizumab in Patients with Systemic Sclerosis-associated Interstitial Lung Disease: A Systematic Review and Meta-Analysis. Ann Am Thorac Soc. 2024 Feb; 21(2):328-337. Ghazipura M, Macrea M, Herman D, Barnes H, Knight SL, Silver RM, Montesi SB, Raghu G, Hossain T. PMID: 37773003; PMCID: PMC12042949.
      View in: PubMed   Mentions:
    24. Treatment of Systemic Sclerosis-associated Interstitial Lung Disease: Evidence-based Recommendations. An Official American Thoracic Society Clinical Practice Guideline. Am J Respir Crit Care Med. 2024 01 15; 209(2):137-152. Raghu G, Montesi SB, Silver RM, Hossain T, Macrea M, Herman D, Barnes H, Adegunsoye A, Azuma A, Chung L, Gardner GC, Highland KB, Hudson M, Kaner RJ, Kolb M, Scholand MB, Steen V, Thomson CC, Volkmann ER, Wigley FM, Burlile D, Kemper KA, Knight SL, Ghazipura M. PMID: 37772985; PMCID: PMC10806429.
      View in: PubMed   Mentions: 72     Fields:    Translation:Humans
    25. Cyclophosphamide in Patients with Systemic Sclerosis-associated Interstitial Lung Disease: A Systematic Review and Meta-Analysis. Ann Am Thorac Soc. 2024 Jan; 21(1):122-135. Barnes H, Ghazipura M, Herman D, Macrea M, Knight SL, Silver RM, Montesi SB, Raghu G, Hossain T. PMID: 37772975; PMCID: PMC12056971.
      View in: PubMed   Mentions:
    26. Mycophenolate in Patients with Systemic Sclerosis-associated Interstitial Lung Disease: A Systematic Review and Meta-Analysis. Ann Am Thorac Soc. 2024 Jan; 21(1):136-150. Herman D, Ghazipura M, Barnes H, Macrea M, Knight SL, Silver RM, Montesi SB, Raghu G, Hossain T. PMID: 37027538; PMCID: PMC12056972.
      View in: PubMed   Mentions:
    27. Toward targeted treatments for silicosis. Curr Opin Pulm Med. 2024 Mar 01; 30(2):185-194. Barnes H, Lam M, Tate MD, Hoy R. PMID: 37851380.
      View in: PubMed   Mentions:
    28. Utility of the Stanford Integrated Psychosocial Assessment for Transplant in predicting outcomes before and after lung transplantation. J Heart Lung Transplant. 2024 Apr; 43(4):571-579. Westall GP, Barnes H, Levin K, Gaffney N, Harris J, Martinez O, Emsley C, Fuller L, Levvey B, Snell GI, Winton-Brown T. PMID: 38000763.
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    29. Occupational Interstitial Lung Diseases. Immunol Allergy Clin North Am. 2023 May; 43(2):323-339. Barnes H, Glaspole I. PMID: 37055091.
      View in: PubMed   Mentions:
    30. Machine learning in radiology: the new frontier in interstitial lung diseases. Lancet Digit Health. 2023 Jan; 5(1):e41-e50. Barnes H, Humphries SM, George PM, Assayag D, Glaspole I, Mackintosh JA, Corte TJ, Glassberg M, Johannson KA, Calandriello L, Felder F, Wells A, Walsh S. PMID: 36517410.
      View in: PubMed   Mentions:
    31. Clinical utility of a standardized chronic hypersensitivity pneumonitis exposure questionnaire. Respirology. 2023 04; 28(4):366-372. Barnes H, Chambers D, Grainge C, Corte TJ, Bastiampillai S, Frenkel S, Westall G, Collard H, Glaspole I. PMID: 36336654.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    32. Development of a Knowledge-sharing Website for Hypersensitivity Pneumonitis Exposures. ATS Sch. 2022 Oct; 3(3):460-467. Barnes H, Lu J, Johannson KA. PMID: 36312801; PMCID: PMC9590405.
      View in: PubMed   Mentions: 2     Fields:    
    33. Progressive fibrosing hypersensitivity pneumonitis: Why wait? Respirology. 2022 Mar; 27(3):192-193. Barnes H, Glaspole IN. PMID: 35146840.
      View in: PubMed   Mentions:
    34. The hidden history of hypersensitivity pneumonitis. Eur Respir J. 2022 01; 59(1). Barnes H, Jones K, Blanc P. PMID: 34083405.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    35. Hypersensitivity pneumonitis: Current concepts in pathogenesis, diagnosis, and treatment. Allergy. 2022 Feb; 77(2):442-453. Barnes H, Troy L, Lee CT, Sperling A, Strek M, Glaspole I. PMID: 34293188.
      View in: PubMed   Mentions:
    36. Management of Fibrotic Hypersensitivity Pneumonitis. Clin Chest Med. 2021 Jun; 42(2):311-319. Barnes H, Johannson KA. PMID: 34024406.
      View in: PubMed   Mentions:
    37. Exposures and associations with clinical phenotypes in hypersensitivity pneumonitis: A scoping review. Respir Med. 2021 08; 184:106444. Barnes H, Lu J, Glaspole I, Collard HR, Johannson KA. PMID: 33991845.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    38. Benefits of a virtual interstitial lung disease multidisciplinary meeting in the face of COVID-19. Respirology. 2021 Jun; 26(6):612-615. Mackintosh JA, Glenn L, Barnes H, Dunn E, Bancroft S, Reddy T, Teoh AKY, Troy L, Jo H, Geis M, Glaspole I, Grainge C, Corte TJ, Chambers DC, Hopkins P. PMID: 33871150; PMCID: PMC8251432.
      View in: PubMed   Mentions:
    39. Reply: BAL lymphocyte percentage is as good as the company it keeps. Eur Respir J. 2021 Feb; 57(2). Adderley N, Humphreys CJ, Barnes H, Premji ZA, Johannson KA. PMID: 33602877.
      View in: PubMed   Mentions:
    40. Pharmacological Interventions for Breathlessness-Absence of Effect or Absence of Evidence? JAMA Netw Open. 2021 Feb 01; 4(2):e210262. Barnes H, Smallwood N. PMID: 33630083.
      View in: PubMed   Mentions:
    41. Exposure Assessment Tools for Hypersensitivity Pneumonitis. An Official American Thoracic Society Workshop Report. Ann Am Thorac Soc. 2020 12; 17(12):1501-1509. Johannson KA, Barnes H, Bellanger AP, Dalphin JC, Fernández Pérez ER, Flaherty KR, Huang YT, Jones KD, Kawano-Dourado L, Kennedy K, Millerick-May M, Miyazaki Y, Morisset J, Morell F, Raghu GR, Robbins C, Sack CS, Salisbury ML, Selman M, Vasakova M, Walsh SLF, Rose CS. PMID: 33258669; PMCID: PMC7706597.
      View in: PubMed   Mentions: 22     Fields:    Translation:Humans
    42. Occupation versus environmental factors in hypersensitivity pneumonitis: population attributable fraction. ERJ Open Res. 2020 Oct; 6(4). Barnes H, Olin AC, Torén K, McSharry C, Donnelly I, Lärstad M, Iribarren C, Quinlan P, Blanc PD. PMID: 33043057; PMCID: PMC7533383.
      View in: PubMed   Mentions: 3  
    43. Pulmonary adverse events of small molecule JAK inhibitors in autoimmune disease: systematic review and meta-analysis. Rheumatology (Oxford). 2020 Sep 01; 59(9):2217-2225. Khoo JK, Barnes H, Key S, Glaspole IN, Östör AJ. PMID: 32406509.
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    44. Bronchoalveolar lavage fluid lymphocytosis in chronic hypersensitivity pneumonitis: a systematic review and meta-analysis. Eur Respir J. 2020 Aug; 56(2). Adderley N, Humphreys CJ, Barnes H, Ley B, Premji ZA, Johannson KA. PMID: 32265306.
      View in: PubMed   Mentions:
    45. Prognosis of idiopathic pulmonary fibrosis without anti-fibrotic therapy: a systematic review. Eur Respir Rev. 2020 Sep 30; 29(157). Khor YH, Ng Y, Barnes H, Goh NSL, McDonald CF, Holland AE. PMID: 32759374; PMCID: PMC9488716.
      View in: PubMed   Mentions:
    46. A Systematically Derived Exposure Assessment Instrument for Chronic Hypersensitivity Pneumonitis. Chest. 2020 06; 157(6):1506-1512. Barnes H, Morisset J, Molyneaux P, Westall G, Glaspole I, Collard HR, CHP Exposure Assessment Collaborators. PMID: 31958445; PMCID: PMC7268442.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    47. Atrial Flutter and Fibrillation Following Lung Transplantation: Incidence, Associations and a Suggested Therapeutic Algorithm. Heart Lung Circ. 2020 Oct; 29(10):1484-1492. Barnes H, Gurry G, McGiffin D, Westall G, Levin K, Paraskeva M, Whitford H, Williams T, Snell G. PMID: 31786113.
      View in: PubMed   Mentions:
    48. Silica-associated lung disease: An old-world exposure in modern industries. Respirology. 2019 Dec; 24(12):1165-1175. Barnes H, Goh NSL, Leong TL, Hoy R. PMID: 31517432.
      View in: PubMed   Mentions:
    49. Prostacyclin for pulmonary arterial hypertension. Cochrane Database Syst Rev. 2019 May 01; 5(5):CD012785. Barnes H, Yeoh HL, Fothergill T, Burns A, Humbert M, Williams T. PMID: 31042010; PMCID: PMC6492481.
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    50. Phosphodiesterase 5 inhibitors for pulmonary hypertension. Cochrane Database Syst Rev. 2019 Jan 31; 1(1):CD012621. Barnes H, Brown Z, Burns A, Williams T. PMID: 30701543; PMCID: PMC6354064.
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    51. The effect of surgical weight loss on obstructive sleep apnoea: A systematic review and meta-analysis. Sleep Med Rev. 2018 12; 42:85-99. Wong AM, Barnes HN, Joosten SA, Landry SA, Dabscheck E, Mansfield DR, Dharmage SC, Senaratna CV, Edwards BA, Hamilton GS. PMID: 30001806.
      View in: PubMed   Mentions: 27     Fields:    Translation:Humans
    52. Author reply. Intern Med J. 2018 Apr; 48(4):486-487. Smallwood N, Barnes H, McDonald J, Manser R. PMID: 29623990.
      View in: PubMed   Mentions:
    53. Cyclophosphamide for connective tissue disease-associated interstitial lung disease. Cochrane Database Syst Rev. 2018 Jan 03; 1(1):CD010908. Barnes H, Holland AE, Westall GP, Goh NS, Glaspole IN. PMID: 29297205; PMCID: PMC6491200.
      View in: PubMed   Mentions:
    54. Surgery for limited-stage small-cell lung cancer. Cochrane Database Syst Rev. 2017 Apr 21; 4(4):CD011917. Barnes H, See K, Barnett S, Manser R. PMID: 28429473; PMCID: PMC6478097.
      View in: PubMed   Mentions:
    55. Positional modification techniques for supine obstructive sleep apnea: A systematic review and meta-analysis. Sleep Med Rev. 2017 Dec; 36:107-115. Barnes H, Edwards BA, Joosten SA, Naughton MT, Hamilton GS, Dabscheck E. PMID: 28012784.
      View in: PubMed   Mentions:
    56. Opioids for the palliation of refractory breathlessness in adults with advanced disease and terminal illness. Cochrane Database Syst Rev. 2016 Mar 31; 3(3):CD011008. Barnes H, McDonald J, Smallwood N, Manser R. PMID: 27030166; PMCID: PMC6485401.
      View in: PubMed   Mentions:
    57. Clinicopathological and surgical experience with primary cardiac tumors. Asian Cardiovasc Thorac Ann. 2014 Nov; 22(9):1054-8. Barnes H, Conaglen P, Russell P, Newcomb A. PMID: 24643841.
      View in: PubMed   Mentions:
    58. Evidence for perinatal and child health care guidelines in crisis settings: can Cochrane help? BMC Public Health. 2010 Mar 29; 10:170. Turner TJ, Barnes H, Reid J, Garrubba M. PMID: 20350326; PMCID: PMC3091544.
      View in: PubMed   Mentions:
    59. Interventions for improving the appropriate use of imaging in people with musculoskeletal conditions. Cochrane Database Syst Rev. 2010 Jan 20; 2010(1):CD006094. French SD, Green S, Buchbinder R, Barnes H. PMID: 20091583; PMCID: PMC7390432.
      View in: PubMed   Mentions:
    60. Quality and consistency of clinical practice guidelines for diagnosis and management of osteoarthritis of the hip and knee: a descriptive overview of published guidelines. Med J Aust. 2008 Oct 06; 189(7):394-9. Misso ML, Pitt VJ, Jones KM, Barnes HN, Piterman L, Green SE. PMID: 18837684.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
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