Nathan Schaefer, PhD

Title(s)Postdoctoral Scholar, Neurology
SchoolSchool of Medicine
Address1651 4th Street, #473
San Francisco CA 94158
Phone--
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Mapping cis- and trans-regulatory target genes of human-specific deletions. bioRxiv. 2023 Dec 28. Fair T, Pavlovic BJ, Schaefer NK, Pollen AA. PMID: 38234800; PMCID: PMC10793408.
      View in: PubMed   Mentions:
    2. Comparative landscape of genetic dependencies in human and chimpanzee stem cells. Cell. 2023 07 06; 186(14):2977-2994.e23. She R, Fair T, Schaefer NK, Saunders RA, Pavlovic BJ, Weissman JS, Pollen AA. PMID: 37343560; PMCID: PMC10461406.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    3. Comparative landscape of genetic dependencies in human and chimpanzee stem cells. bioRxiv. 2023 Mar 20. She R, Fair T, Schaefer NK, Saunders RA, Pavlovic BJ, Weissman JS, Pollen AA. PMID: 36993685; PMCID: PMC10055274.
      View in: PubMed   Mentions:
    4. Rethinking nomenclature for interspecies cell fusions. Nat Rev Genet. 2022 05; 23(5):315-320. Pavlovic BJ, Fox D, Schaefer NK, Pollen AA. PMID: 35082442.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    5. An ancestral recombination graph of human, Neanderthal, and Denisovan genomes. Sci Adv. 2021 07; 7(29). Schaefer NK, Shapiro B, Green RE. PMID: 34272242; PMCID: PMC8284891.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimals
    6. Reintroduction of the archaic variant of NOVA1 in cortical organoids alters neurodevelopment. Science. 2021 02 12; 371(6530). Trujillo CA, Rice ES, Schaefer NK, Chaim IA, Wheeler EC, Madrigal AA, Buchanan J, Preissl S, Wang A, Negraes PD, Szeto RA, Herai RH, Huseynov A, Ferraz MSA, Borges FS, Kihara AH, Byrne A, Marin M, Vollmers C, Brooks AN, Lautz JD, Semendeferi K, Shapiro B, Yeo GW, Smith SEP, Green RE, Muotri AR. PMID: 33574182; PMCID: PMC8006534.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansAnimalsCells
    7. A novel NGS library preparation method to characterize native termini of fragmented DNA. Nucleic Acids Res. 2020 05 07; 48(8):e47. Harkins KM, Schaefer NK, Troll CJ, Rao V, Kapp J, Naughton C, Shapiro B, Green RE. PMID: 32112100; PMCID: PMC7192605.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    8. New middle chapter in the story of human evolution. Science. 2019 09 06; 365(6457):981-982. Schaefer NK, Shapiro B. PMID: 31488673.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    9. Natural selection shaped the rise and fall of passenger pigeon genomic diversity. Science. 2017 11 17; 358(6365):951-954. Murray GGR, Soares AER, Novak BJ, Schaefer NK, Cahill JA, Baker AJ, Demboski JR, Doll A, Da Fonseca RR, Fulton TL, Gilbert MTP, Heintzman PD, Letts B, McIntosh G, O'Connell BL, Peck M, Pipes ML, Rice ES, Santos KM, Sohrweide AG, Vohr SH, Corbett-Detig RB, Green RE, Shapiro B. PMID: 29146814.
      View in: PubMed   Mentions: 43     Fields:    Translation:AnimalsCells
    10. AD-LIBS: inferring ancestry across hybrid genomes using low-coverage sequence data. BMC Bioinformatics. 2017 Apr 04; 18(1):203. Schaefer NK, Shapiro B, Green RE. PMID: 28376731; PMCID: PMC5381037.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimals
    11. Detecting hybridization using ancient DNA. Mol Ecol. 2016 Jun; 25(11):2398-412. Schaefer NK, Shapiro B, Green RE. PMID: 26826668; PMCID: PMC5063030.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimals
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