Thomas Peterson Jr, PhD
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Title(s) | Assistant Professor, Orthopaedic Surgery |
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School | School of Medicine |
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Address | 550 16th Street San Francisco CA 94158
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Phone | 415-514-0528 |
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ORCID
.gif) | 0000-0002-2562-6574  |
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vCard | Download vCard |
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Biography University of California, San Francisco | Postdoctoral Research | 2020 | Biomedical Informatics | University of Maryland, Baltimore County | Ph.D. | 2016 | Biological Sciences, with Focus in Biomedical Informatics & Computational Biology | University of Maryland, Baltimore County | B.S. | 2011 | Information Systems, with Web Development Certificate |
PLOS Computational Biology | 2018 | | 2018 Research Prize for Public Impact | Phi Kappa Phi Honors Society | 2015 | | Selected to be a member of Phi Kappa Phi Honors Society for achieving a perfect GPA | GABS Graduate Student Research Symposium | 2013 | | Best graduate poster award | UMB’s Second Annual Cancer Biology Research Retreat | 2012 | | Best pre-doctoral poster award |
Research ORNG Applications Bibliographic
Altmetrics Details
PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media.
(Note that publications are often cited in additional ways that are not shown here.)
Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication.
Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication.
Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.)
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Protected Health Information filter (Philter): accurately and securely de-identifying free-text clinical notes. NPJ Digit Med. 2020; 3:57.
Norgeot B, Muenzen K, Peterson TA, Fan X, Glicksberg BS, Schenk G, Rutenberg E, Oskotsky B, Sirota M, Yazdany J, Schmajuk G, Ludwig D, Goldstein T, Butte AJ. PMID: 32337372.
View in: PubMed Mentions:
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Explanatory Model of Dry Eye Disease Using Health and Nutrition Examinations: Machine Learning and Network-Based Factor Analysis From a National Survey. JMIR Med Inform. 2020 Feb 20; 8(2):e16153.
Nam SM, Peterson TA, Butte AJ, Seo KY, Han HW. PMID: 32130150.
View in: PubMed Mentions:
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Empirical null estimation using zero-inflated discrete mixture distributions and its application to protein domain data. Biometrics. 2018 06; 74(2):458-471.
Gauran IIM, Park J, Lim J, Park D, Zylstra J, Peterson T, Kann M, Spouge JL. PMID: 28940296.
View in: PubMed Mentions: Fields: Translation: HumansCells
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Oncodomains: A protein domain-centric framework for analyzing rare variants in tumor samples. PLoS Comput Biol. 2017 04; 13(4):e1005428.
Peterson TA, Gauran IIM, Park J, Park D, Kann MG. PMID: 28426665.
View in: PubMed Mentions: 5 Fields: Translation: HumansCells
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Regulatory Single-Nucleotide Variant Predictor Increases Predictive Performance of Functional Regulatory Variants. Hum Mutat. 2016 11; 37(11):1137-1143.
Peterson TA, Mort M, Cooper DN, Radivojac P, Kann MG, Mooney SD. PMID: 27406314.
View in: PubMed Mentions: 5 Fields: Translation: Humans
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Towards precision medicine: advances in computational approaches for the analysis of human variants. J Mol Biol. 2013 Nov 01; 425(21):4047-63.
Peterson TA, Doughty E, Kann MG. PMID: 23962656.
View in: PubMed Mentions: 43 Fields: Translation: Humans
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Crosstalk between the circadian clock and innate immunity in Arabidopsis. PLoS Pathog. 2013; 9(6):e1003370.
Zhang C, Xie Q, Anderson RG, Ng G, Seitz NC, Peterson T, McClung CR, McDowell JM, Kong D, Kwak JM, Lu H. PMID: 23754942.
View in: PubMed Mentions: 49 Fields: Translation: AnimalsCells
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A protein domain-centric approach for the comparative analysis of human and yeast phenotypically relevant mutations. BMC Genomics. 2013; 14 Suppl 3:S5.
Peterson TA, Park D, Kann MG. PMID: 23819456.
View in: PubMed Mentions: 6 Fields: Translation: HumansAnimalsCells
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Domain landscapes of somatic mutations in cancer. AMIA Jt Summits Transl Sci Proc. 2013; 2013:136.
Peterson TA, Park D, Kann MG. PMID: 24303323.
View in: PubMed Mentions:
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Domain landscapes of somatic mutations in cancer. BMC Genomics. 2012 Jun 18; 13 Suppl 4:S9.
Nehrt NL, Peterson TA, Park D, Kann MG. PMID: 22759657.
View in: PubMed Mentions: 28 Fields: Translation: Humans
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Incorporating molecular and functional context into the analysis and prioritization of human variants associated with cancer. J Am Med Inform Assoc. 2012 Mar-Apr; 19(2):275-83.
Peterson TA, Nehrt NL, Park D, Kann MG. PMID: 22319177.
View in: PubMed Mentions: 11 Fields: Translation: HumansCells
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Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature. Bioinformatics. 2011 Feb 01; 27(3):408-15.
Doughty E, Kertesz-Farkas A, Bodenreider O, Thompson G, Adadey A, Peterson T, Kann MG. PMID: 21138947.
View in: PubMed Mentions: 25 Fields: Translation: Humans
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DMDM: domain mapping of disease mutations. Bioinformatics. 2010 Oct 01; 26(19):2458-9.
Peterson TA, Adadey A, Santana-Cruz I, Sun Y, Winder A, Kann MG. PMID: 20685956.
View in: PubMed Mentions: 28 Fields: Translation: HumansCells
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Year | Publications |
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2010 | 2 | 2012 | 2 | 2013 | 4 | 2016 | 1 | 2017 | 2 | 2020 | 2 |
This graph shows the number and percent of publications by field.
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Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
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This graph shows the number and percent of publications by field.
Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
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