Boris Oskotsky • UCSF Profiles

Boris Oskotsky, PhD

Title(s)	Bioinformatics Systems Admin, Computational Health Scienc
School	School of Medicine
Address	490 Illinois Street, #2134 San Francisco CA 94158
ORCID	0000-0002-9364-7051
vCard	Download vCard

Bibliographic

Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

Altmetrics Details

PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

VMAP: Vaginal Microbiome Atlas during Pregnancy. JAMIA Open. 2024 Oct; 7(3):ooae099. Parraga-Leo A, Oskotsky TT, Oskotsky B, Wibrand C, Roldan A, Tang AS, Ha CWY, Wong RJ, Minot SS, Andreoletti G, Kosti I, Theis KR, Ng S, Lee YS, Diaz-Gimeno P, Bennett PR, MacIntyre DA, Lynch SV, Romero R, Tarca AL, Stevenson DK, Aghaeepour N, Golob JL, Sirota M. PMID: 39345789; PMCID: PMC11430916.

View in: PubMed Mentions: 1
Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research. Cell Rep Med. 2024 01 16; 5(1):101350. Golob JL, Oskotsky TT, Tang AS, Roldan A, Chung V, Ha CWY, Wong RJ, Flynn KJ, Parraga-Leo A, Wibrand C, Minot SS, Oskotsky B, Andreoletti G, Kosti I, Bletz J, Nelson A, Gao J, Wei Z, Chen G, Tang ZZ, Novielli P, Romano D, Pantaleo E, Amoroso N, Monaco A, Vacca M, De Angelis M, Bellotti R, Tangaro S, Kuntzleman A, Bigcraft I, Techtmann S, Bae D, Kim E, Jeon J, Joe S, Preterm Birth DREAM Community, Theis KR, Ng S, Lee YS, Diaz-Gimeno P, Bennett PR, MacIntyre DA, Stolovitzky G, Lynch SV, Albrecht J, Gomez-Lopez N, Romero R, Stevenson DK, Aghaeepour N, Tarca AL, Costello JC, Sirota M. PMID: 38134931; PMCID: PMC10829755.

View in: PubMed Mentions: 12 Fields:
Med Medicine (General)
Translation:Humans
A certified de-identification system for all clinical text documents for information extraction at scale. JAMIA Open. 2023 Oct; 6(3):ooad045. Radhakrishnan L, Schenk G, Muenzen K, Oskotsky B, Ashouri Choshali H, Plunkett T, Israni S, Butte AJ. PMID: 37416449; PMCID: PMC10320112.

View in: PubMed Mentions: 7
VMAP: Vaginal Microbiome Atlas During Pregnancy. medRxiv. 2023 Apr 05. Parraga-Leo A, Oskotsky TT, Oskotsky B, Wibrand C, Roldan A, Tang A, Ha CWY, Wong RJ, Minot SS, Andreoletti G, Kosti I, Theis KR, Ng S, Lee YS, Diaz-Gimeno P, Bennett PR, MacIntyre DA, Lynch SV, Romero R, Tarca AL, Stevenson DK, Aghaeepour N, Golob J, Sirota M. PMID: 36993193; PMCID: PMC10055588.

View in: PubMed Mentions: 1
A biomedical open knowledge network harnesses the power of AI to understand deep human biology. AI Mag. 2022; 43(1):46-58. Baranzini SE, Börner K, Morris J, Nelson CA, Soman K, Schleimer E, Keiser M, Musen M, Pearce R, Reza T, Smith B, Herr BW, Oskotsky B, Rizk-Jackson A, Rankin KP, Sanders SJ, Bove R, Rose PW, Israni S, Huang S. PMID: 36093122; PMCID: PMC9456356.

View in: PubMed Mentions: 4
Deep phenotyping of Alzheimer's disease leveraging electronic medical records identifies sex-specific clinical associations. Nat Commun. 2022 02 03; 13(1):675. Tang AS, Oskotsky T, Havaldar S, Mantyh WG, Bicak M, Solsberg CW, Woldemariam S, Zeng B, Hu Z, Oskotsky B, Dubal D, Allen IE, Glicksberg BS, Sirota M. PMID: 35115528; PMCID: PMC8814236.

View in: PubMed Mentions: 15 Fields:
Bio Biology Sci Science
Translation:Humans
Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients. Genome Biol. 2022 01 10; 23(1):15. Kaur N, Oskotsky B, Butte AJ, Hu Z. PMID: 35012625; PMCID: PMC8743438.

View in: PubMed Mentions: 11 Fields:
Gen Genetics
Translation:Humans Cells
Mortality Risk Among Patients With COVID-19 Prescribed Selective Serotonin Reuptake Inhibitor Antidepressants. JAMA Netw Open. 2021 11 01; 4(11):e2133090. Oskotsky T, Maric I, Tang A, Oskotsky B, Wong RJ, Aghaeepour N, Sirota M, Stevenson DK. PMID: 34779847; PMCID: PMC8593759.

View in: PubMed Mentions: 63 Fields:
Med Medicine (General)
Translation:Humans Cells
CovidCounties is an interactive real time tracker of the COVID19 pandemic at the level of US counties. Sci Data. 2020 11 16; 7(1):405. Arneson D, Elliott M, Mosenia A, Oskotsky B, Solodar S, Vashisht R, Zack T, Bleicher P, Butte AJ, Rudrapatna VA. PMID: 33199721; PMCID: PMC7669883.

View in: PubMed Mentions: 8 Fields:
Sci Science
Translation:Humans Cells PHPublic Health
Protected Health Information filter (Philter): accurately and securely de-identifying free-text clinical notes. NPJ Digit Med. 2020; 3:57. Norgeot B, Muenzen K, Peterson TA, Fan X, Glicksberg BS, Schenk G, Rutenberg E, Oskotsky B, Sirota M, Yazdany J, Schmajuk G, Ludwig D, Goldstein T, Butte AJ. PMID: 32337372; PMCID: PMC7156708.

View in: PubMed Mentions: 32
PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model. Bioinformatics. 2019 11 01; 35(21):4515-4518. Glicksberg BS, Oskotsky B, Thangaraj PM, Giangreco N, Badgeley MA, Johnson KW, Datta D, Rudrapatna VA, Rappoport N, Shervey MM, Miotto R, Goldstein TC, Rutenberg E, Frazier R, Lee N, Israni S, Larsen R, Percha B, Li L, Dudley JT, Tatonetti NP, Butte AJ. PMID: 31214700; PMCID: PMC6821222.

View in: PubMed Mentions: 15 Fields:
Com Computational Biology
Translation:Humans
Assessment of a Deep Learning Model Based on Electronic Health Record Data to Forecast Clinical Outcomes in Patients With Rheumatoid Arthritis. JAMA Netw Open. 2019 03 01; 2(3):e190606. Norgeot B, Glicksberg BS, Trupin L, Lituiev D, Gianfrancesco M, Oskotsky B, Schmajuk G, Yazdany J, Butte AJ. PMID: 30874779; PMCID: PMC6484652.

View in: PubMed Mentions: 85 Fields:
Med Medicine (General)
Translation:Humans
ROMOP: a light-weight R package for interfacing with OMOP-formatted electronic health record data. JAMIA Open. 2019 Apr; 2(1):10-14. Glicksberg BS, Oskotsky B, Giangreco N, Thangaraj PM, Rudrapatna V, Datta D, Frazier R, Lee N, Larsen R, Tatonetti NP, Butte AJ. PMID: 31633087; PMCID: PMC6800657.

View in: PubMed Mentions: 6
Comparing Ethnicity-Specific Reference Intervals for Clinical Laboratory Tests from EHR Data. J Appl Lab Med. 2018 Nov 01; 3(3):366-377. Rappoport N, Paik H, Oskotsky B, Tor R, Ziv E, Zaitlen N, Butte AJ. PMID: 33636914; PMCID: PMC8404742.

View in: PubMed Mentions: 16 Fields:
Cli Clinical Laboratory Techniques
Comprehensive analysis of normal adjacent to tumor transcriptomes. Nat Commun. 2017 10 20; 8(1):1077. Aran D, Camarda R, Odegaard J, Paik H, Oskotsky B, Krings G, Goga A, Sirota M, Butte AJ. PMID: 29057876; PMCID: PMC5651823.

View in: PubMed Mentions: 277 Fields:
Bio Biology Sci Science
Translation:Humans Cells
Effect of band mixing on hole transport along the axis of a semiconductor superlattice. Phys Rev B Condens Matter. 1994 Nov 15; 50(20):15416-15419. Gerchikov LG, Oskotsky BD, Subashiev AV. PMID: 9975899.

View in: PubMed Mentions: