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Artur Zalevskii, PhD

Photo of Artur Zalevskii, PhD
Title(s)Postdoctoral Scholar, Bioengineering
SchoolSchool of Pharmacy
Address1700 4th Street, #501
San Francisco CA 94158
ORCID ORCID Icon0000-0001-6987-8119 Additional info
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    Lomonosov Moscow State University, Moscow, RussiaSpecialist06/2015Bioengineering and Bioinformatics
    Lomonosov Moscow State University, Moscow, RussiaPhD12/2019Mathematical biology, Bioinformatics

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. IHMValidation: Assessment of Integrative Structure Models Deposited to the Protein Data Bank. J Mol Biol. 2025 Dec 18; 169598. Zalevsky AO, Vallat B, Webb BM, Tangmunarunkit H, Sekharan MR, Shafaeibejestan A, Ganesan S, Sagendorf J, Jeffries CM, Trewhella J, Graziadei A, Vizcaíno JA, Leitner A, Rappsilber J, Peisach E, Flatt JW, Young JY, Majila K, Viswanath S, Kesselman C, Hoch JC, Kurisu G, Morris KL, Velankar S, Berman HM, Burley SK, Sali A. PMID: 41421450.
      View in: PubMed   Mentions:
    2. RCSB Protein Data Bank: Delivering integrative structures alongside experimental structures and computed structure models. Nucleic Acids Res. 2025 Nov 08. Vallat B, Rose Y, Piehl DW, Duarte JM, Bittrich S, Bi C, Segura J, Zalevsky A, Sekharan MR, Webb BM, Bhikadiya C, Voigt M, Henry J, Chao H, Pingale A, Raymond D, Sagendorf J, Peisach E, Feng Z, Guranovic V, Smith J, Rose AS, Young JY, Berman HM, Sali A, Burley SK. PMID: 41206752.
      View in: PubMed   Mentions:
    3. AlphaCross-XL: A Seamless Tool for Automated and Proteome-Scale Mapping of Cross-Linked Peptides Onto 3D Protein Structures. Mol Cell Proteomics. 2025 Oct; 24(10):101057. Shenoy SV, Biswas D, Zalevsky A, Kishishita A, Verma A, Upadhay I, He Y, Sali A, Viner R, Mandal K, Srivastava S, Wiita AP. PMID: 40840759; PMCID: PMC12509755.
      View in: PubMed   Mentions:    Fields:    
    4. A role of pigment epithelium-derived factor in zinc-mediated mechanism of neurodegeneration in glaucoma. Commun Biol. 2025 Jul 01; 8(1):965. Chistyakov DV, Belousov AS, Shevelyova MP, Iomdina EN, Baksheeva VE, Shebardina NG, Moysenovich AM, Bulgakov TK, Petrov SY, Shishkin ML, Tulush SS, Tiulina VV, Pogodina EI, Gancharova OS, Filippova OM, Baldin AV, Goriainov SV, Nikolskaya AI, Zalevsky AO, Deviatkin AA, Vologzhannikova AA, Gorokhovets NV, Litus EA, Komarov SV, Devred F, Sergeeva MG, Mishin AV, Bukhdruker SS, Wu L, Araujo EA, Zamyatnin AA, Senin II, Zinchenko DV, Tsvetkov PO, Borshchevskiy VI, Permyakov SE, Zernii EY. PMID: 40596696; PMCID: PMC12215840.
      View in: PubMed   Mentions: Translation:HumansAnimals
    5. PDB-IHM: A System for Deposition, Curation, Validation, and Dissemination of Integrative Structures. J Mol Biol. 2025 Aug 01; 437(15):168963. Vallat B, Webb BM, Zalevsky A, Tangmunarunkit H, Sekharan MR, Voinea S, Shafaeibejestan A, Sagendorf J, Hoch JC, Kurisu G, Morris KL, Velankar S, Kesselman C, Burley SK, Berman HM, Sali A. PMID: 40110969; PMCID: PMC12327472.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    6. Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank. Nucleic Acids Res. 2025 Jan 06; 53(D1):D564-D574. Burley SK, Bhatt R, Bhikadiya C, Bi C, Biester A, Biswas P, Bittrich S, Blaumann S, Brown R, Chao H, Chithari VR, Craig PA, Crichlow GV, Duarte JM, Dutta S, Feng Z, Flatt JW, Ghosh S, Goodsell DS, Green RK, Guranovic V, Henry J, Hudson BP, Joy M, Kaelber JT, Khokhriakov I, Lai JS, Lawson CL, Liang Y, Myers-Turnbull D, Peisach E, Persikova I, Piehl DW, Pingale A, Rose Y, Sagendorf J, Sali A, Segura J, Sekharan M, Shao C, Smith J, Trumbull M, Vallat B, Voigt M, Webb B, Whetstone S, Wu-Wu A, Xing T, Young JY, Zalevsky A, Zardecki C. PMID: 39607707; PMCID: PMC11701563.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    7. Illuminating the function of the orphan transporter, SLC22A10, in humans and other primates. Nat Commun. 2024 May 23; 15(1):4380. Yee SW, Ferrández-Peral L, Alentorn-Moron P, Fontsere C, Ceylan M, Koleske ML, Handin N, Artegoitia VM, Lara G, Chien HC, Zhou X, Dainat J, Zalevsky A, Sali A, Brand CM, Wolfreys FD, Yang J, Gestwicki JE, Capra JA, Artursson P, Newman JW, Marquès-Bonet T, Giacomini KM. PMID: 38782905; PMCID: PMC11116522.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    8. IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods. J Mol Biol. 2024 Sep 01; 436(17):168546. Vallat B, Webb BM, Westbrook JD, Goddard TD, Hanke CA, Graziadei A, Peisach E, Zalevsky A, Sagendorf J, Tangmunarunkit H, Voinea S, Sekharan M, Yu J, Bonvin AAMJJ, DiMaio F, Hummer G, Meiler J, Tajkhorshid E, Ferrin TE, Lawson CL, Leitner A, Rappsilber J, Seidel CAM, Jeffries CM, Burley SK, Hoch JC, Kurisu G, Morris K, Patwardhan A, Velankar S, Schwede T, Trewhella J, Kesselman C, Berman HM, Sali A. PMID: 38508301; PMCID: PMC11377171.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    9. Structures, functions and adaptations of the human LINE-1 ORF2 protein. Nature. 2024 Feb; 626(7997):194-206. Baldwin ET, van Eeuwen T, Hoyos D, Zalevsky A, Tchesnokov EP, Sánchez R, Miller BD, Di Stefano LH, Ruiz FX, Hancock M, Isik E, Mendez-Dorantes C, Walpole T, Nichols C, Wan P, Riento K, Halls-Kass R, Augustin M, Lammens A, Jestel A, Upla P, Xibinaku K, Congreve S, Hennink M, Rogala KB, Schneider AM, Fairman JE, Christensen SM, Desrosiers B, Bisacchi GS, Saunders OL, Hafeez N, Miao W, Kapeller R, Zaller DM, Sali A, Weichenrieder O, Burns KH, Götte M, Rout MP, Arnold E, Greenbaum BD, Romero DL, LaCava J, Taylor MS. PMID: 38096902; PMCID: PMC10830420.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansCells
    10. RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning. Nucleic Acids Res. 2023 01 06; 51(D1):D488-D508. Burley SK, Bhikadiya C, Bi C, Bittrich S, Chao H, Chen L, Craig PA, Crichlow GV, Dalenberg K, Duarte JM, Dutta S, Fayazi M, Feng Z, Flatt JW, Ganesan S, Ghosh S, Goodsell DS, Green RK, Guranovic V, Henry J, Hudson BP, Khokhriakov I, Lawson CL, Liang Y, Lowe R, Peisach E, Persikova I, Piehl DW, Rose Y, Sali A, Segura J, Sekharan M, Shao C, Vallat B, Voigt M, Webb B, Westbrook JD, Whetstone S, Young JY, Zalevsky A, Zardecki C. PMID: 36420884; PMCID: PMC9825554.
      View in: PubMed   Mentions: 286     Fields:    Translation:Cells
    11. RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D. Protein Sci. 2022 12; 31(12):e4482. Burley SK, Bhikadiya C, Bi C, Bittrich S, Chao H, Chen L, Craig PA, Crichlow GV, Dalenberg K, Duarte JM, Dutta S, Fayazi M, Feng Z, Flatt JW, Ganesan SJ, Ghosh S, Goodsell DS, Green RK, Guranovic V, Henry J, Hudson BP, Khokhriakov I, Lawson CL, Liang Y, Lowe R, Peisach E, Persikova I, Piehl DW, Rose Y, Sali A, Segura J, Sekharan M, Shao C, Vallat B, Voigt M, Webb B, Westbrook JD, Whetstone S, Young JY, Zalevsky A, Zardecki C. PMID: 36281733; PMCID: PMC9667899.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    12. Extracellular Vesicles in Chronic Demyelinating Diseases: Prospects in Treatment and Diagnosis of Autoimmune Neurological Disorders. Life (Basel). 2022 Nov 21; 12(11). Ovchinnikova LA, Zalevsky AO, Lomakin YA. PMID: 36431078; PMCID: PMC9693249.
      View in: PubMed   Mentions: 3  
    13. A structural biology community assessment of AlphaFold2 applications. Nat Struct Mol Biol. 2022 Nov; 29(11):1056-1067. Akdel M, Pires DEV, Pardo EP, Jänes J, Zalevsky AO, Mészáros B, Bryant P, Good LL, Laskowski RA, Pozzati G, Shenoy A, Zhu W, Kundrotas P, Serra VR, Rodrigues CHM, Dunham AS, Burke D, Borkakoti N, Velankar S, Frost A, Basquin J, Lindorff-Larsen K, Bateman A, Kajava AV, Valencia A, Ovchinnikov S, Durairaj J, Ascher DB, Thornton JM, Davey NE, Stein A, Elofsson A, Croll TI, Beltrao P. PMID: 36344848; PMCID: PMC9663297.
      View in: PubMed   Mentions: 270     Fields:    Translation:Cells
    14. Protein Design: From the Aspect of Water Solubility and Stability. Chem Rev. 2022 Sep 28; 122(18):14085-14179. Qing R, Hao S, Smorodina E, Jin D, Zalevsky A, Zhang S. PMID: 35921495; PMCID: PMC9523718.
      View in: PubMed   Mentions: 52     Fields:    Translation:Cells
    15. Zinc Modulation of Neuronal Calcium Sensor Proteins: Three Modes of Interaction with Different Structural Outcomes. Biomolecules. 2022 Jul 08; 12(7). Baksheeva VE, Tsvetkov PO, Zalevsky AO, Vladimirov VI, Gorokhovets NV, Zinchenko DV, Permyakov SE, Devred F, Zernii EY. PMID: 35883512; PMCID: PMC9312857.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    16. SERS-based biosensor with Raman-active external responsive element for rapid determination of adenosine monophosphate. Anal Chim Acta. 2022 Aug 15; 1221:340140. Zavyalova E, Tikhonova D, Zhdanov G, Rudakova E, Alferova V, Moiseenko A, Kamzeeva P, Khrulev A, Zalevsky A, Arutyunyan A, Novikov R, Kukushkin V, Aralov A. PMID: 35934372.
      View in: PubMed   Mentions: 3     Fields:    
    17. Deep Functional Profiling of Wild Animal Microbiomes Reveals Probiotic Bacillus pumilus Strains with a Common Biosynthetic Fingerprint. Int J Mol Sci. 2022 Jan 21; 23(3). Baranova MN, Kudzhaev AM, Mokrushina YA, Babenko VV, Kornienko MA, Malakhova MV, Yudin VG, Rubtsova MP, Zalevsky A, Belozerova OA, Kovalchuk S, Zhuravlev YN, Ilina EN, Gabibov AG, Smirnov IV, Terekhov SS. PMID: 35163108; PMCID: PMC8835302.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    18. Mechanism of Zn2+ and Ca2+ Binding to Human S100A1. Biomolecules. 2021 Dec 03; 11(12). Baksheeva VE, Roman AY, Villard C, Devred F, Byrne D, Yatoui D, Zalevsky AO, Vologzhannikova AA, Sokolov AS, Permyakov SE, Golovin AV, Shaw GS, Tsvetkov PO, Zernii EY. PMID: 34944467; PMCID: PMC8699212.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    19. Disulfide Dimerization of Neuronal Calcium Sensor-1: Implications for Zinc and Redox Signaling. Int J Mol Sci. 2021 Nov 22; 22(22). Baksheeva VE, Baldin AV, Zalevsky AO, Nazipova AA, Kazakov AS, Vladimirov VI, Gorokhovets NV, Devred F, Philippov PP, Bazhin AV, Golovin AV, Zamyatnin AA, Zinchenko DV, Tsvetkov PO, Permyakov SE, Zernii EY. PMID: 34830487; PMCID: PMC8623652.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    20. Molecular Coevolution of Nuclear and Nucleolar Localization Signals inside the Basic Domain of HIV-1 Tat. J Virol. 2022 Jan 12; 96(1):e0150521. Kurnaeva MA, Zalevsky AO, Arifulin EA, Lisitsyna OM, Tvorogova AV, Shubina MY, Bourenkov GP, Tikhomirova MA, Potashnikova DM, Kachalova AI, Musinova YR, Golovin AV, Vassetzky YS, Sheval EV. PMID: 34613791; PMCID: PMC8754208.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    21. Modulation of Toll-like receptor 1 intracellular domain structure and activity by Zn2+ ions. Commun Biol. 2021 Aug 24; 4(1):1003. Lushpa VA, Goncharuk MV, Lin C, Zalevsky AO, Talyzina IA, Luginina AP, Vakhrameev DD, Shevtsov MB, Goncharuk SA, Arseniev AS, Borshchevskiy VI, Wang X, Mineev KS. PMID: 34429510; PMCID: PMC8385042.
      View in: PubMed   Mentions: 12  Translation:HumansCells
    22. In silico Screening and Behavioral Validation of a Novel Peptide, LCGA-17, With Anxiolytic-Like Properties. Front Neurosci. 2021; 15:705590. Malyshev AV, Sukhanova IA, Zlobin AS, Gedzun VR, Pavshintsev VV, Vasileva EV, Zalevsky AO, Doronin II, Mitkin NA, Golovin AV, Lovat ML, Kovalev GI, Zolotarev YA, Kuchumov AR, Babkin GA, Luscher B. PMID: 34421525; PMCID: PMC8372404.
      View in: PubMed   Mentions: 5  
    23. Reprogramming Extracellular Vesicles for Protein Therapeutics Delivery. Pharmaceutics. 2021 May 21; 13(6). Ovchinnikova LA, Terekhov SS, Ziganshin RH, Bagrov DV, Filimonova IN, Zalevsky AO, Lomakin YA. PMID: 34064144; PMCID: PMC8224366.
      View in: PubMed   Mentions: 18  
    24. Genomic signatures of recombination in a natural population of the bdelloid rotifer Adineta vaga. Nat Commun. 2020 Dec 18; 11(1):6421. Vakhrusheva OA, Mnatsakanova EA, Galimov YR, Neretina TV, Gerasimov ES, Naumenko SA, Ozerova SG, Zalevsky AO, Yushenova IA, Rodriguez F, Arkhipova IR, Penin AA, Logacheva MD, Bazykin GA, Kondrashov AS. PMID: 33339818; PMCID: PMC7749112.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    25. Zinc Binds to RRM2 Peptide of TDP-43. Int J Mol Sci. 2020 Nov 29; 21(23). Golovin AV, Devred F, Yatoui D, Roman AY, Zalevsky AO, Puppo R, Lebrun R, Guerlesquin F, Tsvetkov PO. PMID: 33260324; PMCID: PMC7730363.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    26. Alterations in proteome of human sclera associated with primary open-angle glaucoma involve proteins participating in regulation of the extracellular matrix. Mol Vis. 2020; 26:623-640. Iomdina EN, Tikhomirova NK, Bessmertny AM, Serebryakova MV, Baksheeva VE, Zalevsky AO, Kotelin VI, Kiseleva OA, Kosakyan SM, Zamyatnin AA, Philippov PP, Zernii EY. PMID: 32913388; PMCID: PMC7479071.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    27. Multiscale computation delivers organophosphorus reactivity and stereoselectivity to immunoglobulin scavengers. Proc Natl Acad Sci U S A. 2020 Sep 15; 117(37):22841-22848. Mokrushina YA, Golovin AV, Smirnov IV, Chatziefthimiou SD, Stepanova AV, Bobik TV, Zalevsky AO, Zlobin AS, Konovalov KA, Terekhov SS, Stepanov AV, Pipiya SO, Shamborant OG, Round E, Belogurov AA, Bourenkov G, Makarov AA, Wilmanns M, Xie J, Blackburn GM, Gabibov AG, Lerner RA. PMID: 32859757; PMCID: PMC7502716.
      View in: PubMed   Mentions: 6     Fields:    
    28. A Fluorescent Assay to Search for Inhibitors of HIV-1 Integrase Interactions with Human Ku70 Protein, and Its Application for Characterization of Oligonucleotide Inhibitors. Biomolecules. 2020 Aug 25; 10(9). Galkin S, Rozina A, Zalevsky A, Gottikh M, Anisenko A. PMID: 32854330; PMCID: PMC7563236.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    29. A kinase bioscavenger provides antibiotic resistance by extremely tight substrate binding. Sci Adv. 2020 Jun; 6(26):eaaz9861. Terekhov SS, Mokrushina YA, Nazarov AS, Zlobin A, Zalevsky A, Bourenkov G, Golovin A, Belogurov A, Osterman IA, Kulikova AA, Mitkevich VA, Lou HJ, Turk BE, Wilmanns M, Smirnov IV, Altman S, Gabibov AG. PMID: 32637600; PMCID: PMC7314540.
      View in: PubMed   Mentions: 11     Fields:    
    30. Membrane Binding of Neuronal Calcium Sensor-1: Highly Specific Interaction with Phosphatidylinositol-3-Phosphate. Biomolecules. 2020 Jan 21; 10(2). Baksheeva VE, Nemashkalova EL, Firsov AM, Zalevsky AO, Vladimirov VI, Tikhomirova NK, Philippov PP, Zamyatnin AA, Zinchenko DV, Antonenko YN, Permyakov SE, Zernii EY. PMID: 31973069; PMCID: PMC7072451.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    31. NHEJ pathway is involved in post-integrational DNA repair due to Ku70 binding to HIV-1 integrase. Retrovirology. 2019 Nov 06; 16(1):30. Knyazhanskaya E, Anisenko A, Shadrina O, Kalinina A, Zatsepin T, Zalevsky A, Mazurov D, Gottikh M. PMID: 31690330; PMCID: PMC6833283.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    32. Mitochondria as a Source and a Target for Uremic Toxins. Int J Mol Sci. 2019 Jun 25; 20(12). Popkov VA, Silachev DN, Zalevsky AO, Zorov DB, Plotnikov EY. PMID: 31242575; PMCID: PMC6627204.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansAnimalsCells
    33. Putative Mechanisms Underlying High Inhibitory Activities of Bimodular DNA Aptamers to Thrombin. Biomolecules. 2019 Jan 24; 9(2). Zavyalova EG, Legatova VA, Alieva RS, Zalevsky AO, Tashlitsky VN, Arutyunyan AM, Kopylov AM. PMID: 30682825; PMCID: PMC6406280.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
    34. PeptoGrid-Rescoring Function for AutoDock Vina to Identify New Bioactive Molecules from Short Peptide Libraries. Molecules. 2019 Jan 13; 24(2). Zalevsky AO, Zlobin AS, Gedzun VR, Reshetnikov RV, Lovat ML, Malyshev AV, Doronin II, Babkin GA, Golovin AV. PMID: 30642123; PMCID: PMC6359344.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    35. QM/MM Description of Newly Selected Catalytic Bioscavengers Against Organophosphorus Compounds Revealed Reactivation Stimulus Mediated by Histidine Residue in the Acyl-Binding Loop. Front Pharmacol. 2018; 9:834. Zlobin A, Mokrushina Y, Terekhov S, Zalevsky A, Bobik T, Stepanova A, Aliseychik M, Kartseva O, Panteleev S, Golovin A, Belogurov A, Gabibov A, Smirnov I. PMID: 30123127; PMCID: PMC6085465.
      View in: PubMed   Mentions: 7  
    36. A coarse-grained model for DNA origami. Nucleic Acids Res. 2018 Feb 16; 46(3):1102-1112. Reshetnikov RV, Stolyarova AV, Zalevsky AO, Panteleev DY, Pavlova GV, Klinov DV, Golovin AV, Protopopova AD. PMID: 29267876; PMCID: PMC5814798.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
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