Athena Ypsilanti, PhD

Title(s)Associate Specialist, Psychiatry
SchoolSchool of Medicine
Address1550 Fourth Street, #282
San Francisco CA 94158
Phone415-476-7872
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    Other Positions
    Title(s)UCSF Weill Institute for Neurosciences


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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Combinatorial transcription factor binding encodes cis-regulatory wiring of mouse forebrain GABAergic neurogenesis. Dev Cell. 2024 Oct 29. Catta-Preta R, Lindtner S, Ypsilanti A, Seban N, Price JD, Abnousi A, Su-Feher L, Wang Y, Cichewicz K, Boerma SA, Juric I, Jones IR, Akiyama JA, Hu M, Shen Y, Visel A, Pennacchio LA, Dickel DE, Rubenstein JLR, Nord AS. PMID: 39481376.
      View in: PubMed   Mentions:    Fields:    
    2. Five autism-associated transcriptional regulators target shared loci proximal to brain-expressed genes. Cell Rep. 2024 Jun 25; 43(6):114329. Fazel Darbandi S, An JY, Lim K, Page NF, Liang L, Young DM, Ypsilanti AR, State MW, Nord AS, Sanders SJ, Rubenstein JLR. PMID: 38850535; PMCID: PMC11235582.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimals
    3. Combinatorial transcription factor binding encodes cis-regulatory wiring of forebrain GABAergic neurogenesis. bioRxiv. 2023 Jun 28. Catta-Preta R, Lindtner S, Ypsilanti A, Price J, Abnousi A, Su-Feher L, Wang Y, Juric I, Jones IR, Akiyama JA, Hu M, Shen Y, Visel A, Pennacchio LA, Dickel D, Rubenstein JLR, Nord AS. PMID: 37425940; PMCID: PMC10327028.
      View in: PubMed   Mentions:
    4. DLX1 and the NuRD complex cooperate in enhancer decommissioning and transcriptional repression. Development. 2022 06 01; 149(11). Price JD, Lindtner S, Ypsilanti A, Binyameen F, Johnson JR, Newton BW, Krogan NJ, Rubenstein JLR. PMID: 35695185; PMCID: PMC9245191.
      View in: PubMed   Mentions: 5     Fields:    
    5. Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia. Proc Natl Acad Sci U S A. 2022 04 12; 119(15):e2108760119. Su-Feher L, Rubin AN, Silberberg SN, Catta-Preta R, Lim KJ, Ypsilanti AR, Zdilar I, McGinnis CS, McKinsey GL, Rubino TE, Hawrylycz MJ, Thompson C, Gartner ZJ, Puelles L, Zeng H, Rubenstein JLR, Nord AS. PMID: 35377797; PMCID: PMC9169651.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    6. Transcriptional network orchestrating regional patterning of cortical progenitors. Proc Natl Acad Sci U S A. 2021 12 21; 118(51). Ypsilanti AR, Pattabiraman K, Catta-Preta R, Golonzhka O, Lindtner S, Tang K, Jones IR, Abnousi A, Juric I, Hu M, Shen Y, Dickel DE, Visel A, Pennachio LA, Hawrylycz M, Thompson CL, Zeng H, Barozzi I, Nord AS, Rubenstein JL. PMID: 34921112; PMCID: PMC8713794.
      View in: PubMed   Mentions: 23     Fields:    Translation:Animals
    7. Autism risk gene POGZ promotes chromatin accessibility and expression of clustered synaptic genes. Cell Rep. 2021 12 07; 37(10):110089. Markenscoff-Papadimitriou E, Binyameen F, Whalen S, Price J, Lim K, Ypsilanti AR, Catta-Preta R, Pai EL, Mu X, Xu D, Pollard KS, Nord AS, State MW, Rubenstein JL. PMID: 34879283; PMCID: PMC9512081.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    8. Ultraconserved enhancer function does not require perfect sequence conservation. Nat Genet. 2021 04; 53(4):521-528. Snetkova V, Ypsilanti AR, Akiyama JA, Mannion BJ, Plajzer-Frick I, Novak CS, Harrington AN, Pham QT, Kato M, Zhu Y, Godoy J, Meky E, Hunter RD, Shi M, Kvon EZ, Afzal V, Tran S, Rubenstein JLR, Visel A, Pennacchio LA, Dickel DE. PMID: 33782603; PMCID: PMC8038972.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansAnimalsCells
    9. Ultraconserved Enhancers Are Required for Normal Development. Cell. 2018 01 25; 172(3):491-499.e15. Dickel DE, Ypsilanti AR, Pla R, Zhu Y, Barozzi I, Mannion BJ, Khin YS, Fukuda-Yuzawa Y, Plajzer-Frick I, Pickle CS, Lee EA, Harrington AN, Pham QT, Garvin TH, Kato M, Osterwalder M, Akiyama JA, Afzal V, Rubenstein JLR, Pennacchio LA, Visel A. PMID: 29358049; PMCID: PMC5786478.
      View in: PubMed   Mentions: 99     Fields:    Translation:AnimalsCells
    10. Pbx Regulates Patterning of the Cerebral Cortex in Progenitors and Postmitotic Neurons. Neuron. 2015 Dec 16; 88(6):1192-1207. Golonzhka O, Nord A, Tang PLF, Lindtner S, Ypsilanti AR, Ferretti E, Visel A, Selleri L, Rubenstein JLR. PMID: 26671461; PMCID: PMC4688141.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    11. Nkx2.1-derived astrocytes and neurons together with Slit2 are indispensable for anterior commissure formation. Nat Commun. 2015 Apr 23; 6:6887. Minocha S, Valloton D, Ypsilanti AR, Fiumelli H, Allen EA, Yanagawa Y, Marin O, Chédotal A, Hornung JP, Lebrand C. PMID: 25904499; PMCID: PMC4423212.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    12. Robo1 modulates proliferation and neurogenesis in the developing neocortex. J Neurosci. 2014 Apr 16; 34(16):5717-31. Yeh ML, Gonda Y, Mommersteeg MT, Barber M, Ypsilanti AR, Hanashima C, Parnavelas JG, Andrews WD. PMID: 24741061; PMCID: PMC3988420.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    13. Increased expression of glial fibrillary acidic protein in prefrontal cortex in psychotic illness. Schizophr Res. 2013 Oct; 150(1):252-7. Feresten AH, Barakauskas V, Ypsilanti A, Barr AM, Beasley CL. PMID: 23911257.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansAnimals
    14. Slit-roundabout signaling regulates the development of the cardiac systemic venous return and pericardium. Circ Res. 2013 Feb 01; 112(3):465-75. Mommersteeg MT, Andrews WD, Ypsilanti AR, Zelina P, Yeh ML, Norden J, Kispert A, Chédotal A, Christoffels VM, Parnavelas JG. PMID: 23255421.
      View in: PubMed   Mentions: 33     Fields:    Translation:AnimalsCells
    15. Slit2 and Robo3 modulate the migration of GnRH-secreting neurons. Development. 2012 Sep; 139(18):3326-31. Cariboni A, Andrews WD, Memi F, Ypsilanti AR, Zelina P, Chedotal A, Parnavelas JG. PMID: 22912413; PMCID: PMC3424043.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    16. A regulatory toolbox of MiniPromoters to drive selective expression in the brain. Proc Natl Acad Sci U S A. 2010 Sep 21; 107(38):16589-94. Portales-Casamar E, Swanson DJ, Liu L, de Leeuw CN, Banks KG, Ho Sui SJ, Fulton DL, Ali J, Amirabbasi M, Arenillas DJ, Babyak N, Black SF, Bonaguro RJ, Brauer E, Candido TR, Castellarin M, Chen J, Chen Y, Cheng JC, Chopra V, Docking TR, Dreolini L, D'Souza CA, Flynn EK, Glenn R, Hatakka K, Hearty TG, Imanian B, Jiang S, Khorasan-zadeh S, Komljenovic I, Laprise S, Liao NY, Lim JS, Lithwick S, Liu F, Liu J, Lu M, McConechy M, McLeod AJ, Milisavljevic M, Mis J, O'Connor K, Palma B, Palmquist DL, Schmouth JF, Swanson MI, Tam B, Ticoll A, Turner JL, Varhol R, Vermeulen J, Watkins RF, Wilson G, Wong BK, Wong SH, Wong TY, Yang GS, Ypsilanti AR, Jones SJ, Holt RA, Goldowitz D, Wasserman WW, Simpson EM. PMID: 20807748; PMCID: PMC2944712.
      View in: PubMed   Mentions: 48     Fields:    Translation:HumansAnimalsCells
    17. Moving away from the midline: new developments for Slit and Robo. Development. 2010 Jun; 137(12):1939-52. Ypsilanti AR, Zagar Y, Chédotal A. PMID: 20501589.
      View in: PubMed   Mentions: 113     Fields:    Translation:AnimalsCells
    18. Effects of sub-chronic clozapine and haloperidol administration on brain lipid levels. Prog Neuropsychopharmacol Biol Psychiatry. 2010 May 30; 34(4):669-73. Barakauskas VE, Ypsilanti AR, Barr AM, Innis SM, Honer WG, Beasley CL. PMID: 20227455.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    19. A novel mechanism and treatment target for presynaptic abnormalities in specific striatal regions in schizophrenia. Neuropsychopharmacology. 2010 Apr; 35(5):1226-38. Barakauskas VE, Beasley CL, Barr AM, Ypsilanti AR, Li HY, Thornton AE, Wong H, Rosokilja G, Mann JJ, Mancevski B, Jakovski Z, Davceva N, Ilievski B, Dwork AJ, Falkai P, Honer WG. PMID: 20072114; PMCID: PMC3055413.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimalsCells
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