Zev Gartner, PhD

Title(s)Professor, Pharmaceutical Chemistry
SchoolSchool of Pharmacy
Address600 16th St, #N512E
San Francisco CA 94158
ORCID ORCID Icon0000-0001-7803-1219 Additional info
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    Collapse Biography 
    Collapse Education and Training
    UC BerkeleyB.S.1999Chemistry
    Harvard UniversityPh.D.2004Chemistry
    UC BerkeleyPost Doctoral2008Chemistry
    Collapse Awards and Honors
    1998  - 1998Beckman Scholar
    UC Berkeley1999  - 1999High Honors in Chemistry
    National Science Foundation Graduate Research2000  - 2000Fellowship
    Bristol-Myers Squibb2003  - 2003Fellowship
    Harvard2003  - 2003Merit Fellowship
    2005  - 2005IUPAC Prize for Young Chemists "for the best Ph.D. theses in the chemical sciences."
    2006  - 2006Jane Coffin Childs Postdoctoral Fellow
    2008  - 2008Sandler Opportunity Award
    2010  - 2010Kimmel Scholar Award
    2010  - 2010Era of Hope Scholar Award
    NIH2013New Innovator Award
    Popular Science2015Brilliant 10

    Collapse Overview 
    Collapse Overview
    The human body contains over 10 trillion cells spanning hundreds of morphologically distinct cell types. These cells must work together for our bodies to function correctly. However, it remains a mystery how such an enormous diversity of cells coordinate their behaviors.

    Tissue structure - or the composition and physical arrangement of cells, extracellular matrix, and diffusible molecules - helps to coordinate cellular behaviors by organizing the flow of chemical, mechanical, and electrical information between cells. Thus, building tissue structure correctly and maintaining tissue structure over time are prerequisites for engineering functional organs and stopping the progression of diseases like cancer.

    We are interested in three general questions about how tissue structure forms and functions:

    (i) How does tissue structure form through the process of self-organization?
    (ii) How does tissue structure help cells to arrive at collective decisions and to organize collective behaviors?
    (iii) How does tissue structure breakdown during the progression of diseases like cancer?

    To answer these questions we take a synthetic approach, building human tissues from the bottom-up. This approach allows us to measure and perturb the molecular and physical properties of individual cells, reconstitute them into living tissue, then observe their interactions to reveal the underlying "rules" guiding their collective behaviors. We focus primarily on the cells and tissues of the human breast, and our work incorporates experimental principles from the chemical, biological, and engineering sciences.

    Collapse Research 
    Collapse Research Activities and Funding
    Universal Sample Multiplexing for Single Cell Analysis
    NIH R33CA247744May 1, 2021 - Apr 30, 2024
    Role: Principal Investigator
    The physical and molecular mechanisms of intestinal villus morphogenesis and repair
    NIH R01DK126376Sep 15, 2020 - Jun 30, 2025
    Role: Principal Investigator
    Understanding breast cancer progression as a defect in the mechanics of tissue self-organization
    NIH U01CA244109May 1, 2020 - Apr 30, 2025
    Role: Principal Investigator
    MULTIseq: multiplexing massively parallel single cell transcriptional analysis across time, space, and conditions
    NIH R01GM135462Sep 20, 2019 - Jun 30, 2023
    Role: Principal Investigator
    Identifying the intercellular networks regulating estrogen receptor expression with a high definition single cell printer
    NIH R21CA195709Sep 18, 2014 - Aug 31, 2016
    Role: Principal Investigator
    Small, modular, and monovalent Quantum Dots for single molecule imaging of Notch
    NIH R21EB018044Mar 1, 2014 - Feb 29, 2016
    Role: Co-Principal Investigator
    Total synthesis of the human mammary gland
    NIH DP2HD080351Sep 30, 2013 - Jul 31, 2018
    Role: Principal Investigator

    Collapse ORNG Applications 
    Collapse Featured Publications
    Collapse Academic Senate

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Epithelial zonation along the mouse and human small intestine defines five discrete metabolic domains. Nat Cell Biol. 2024 Feb; 26(2):250-262. Zwick RK, Kasparek P, Palikuqi B, Viragova S, Weichselbaum L, McGinnis CS, McKinley KL, Rathnayake A, Vaka D, Nguyen V, Trentesaux C, Reyes E, Gupta AR, Gartner ZJ, Locksley RM, Gardner JM, Itzkovitz S, Boffelli D, Klein OD. PMID: 38321203.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    2. MAGIC matrices: freeform bioprinting materials to support complex and reproducible organoid morphogenesis. bioRxiv. 2024 Feb 05. Graham AJ, Khoo MWL, Srivastava V, Viragova S, Parekh K, Morley CD, Bird M, Lebel P, Kumar S, Klein O, Gómez-Sjöberg R, Gartner ZJ. PMID: 38370663; PMCID: PMC10871257.
      View in: PubMed   Mentions:
    3. deMULTIplex2: robust sample demultiplexing for scRNA-seq. Genome Biol. 2024 Jan 30; 25(1):37. Zhu Q, Conrad DN, Gartner ZJ. PMID: 38291503; PMCID: PMC10829271.
      View in: PubMed   Mentions: 1     Fields:    
    4. Coordinated immune dysregulation in Juvenile Dermatomyositis revealed by single-cell genomics. bioRxiv. 2023 Nov 10. Rabadam G, Wibrand C, Flynn E, Hartoularos GC, Sun Y, Ye CJ, Kim S, Gartner Z, Sirota M, Neely J. PMID: 37986917; PMCID: PMC10659396.
      View in: PubMed   Mentions:
    5. Epithelial TNF controls cell differentiation and CFTR activity to maintain intestinal mucin homeostasis. J Clin Invest. 2023 10 16; 133(20). Reyes EA, Castillo-Azofeifa D, Rispal J, Wald T, Zwick RK, Palikuqi B, Mujukian A, Rabizadeh S, Gupta AR, Gardner JM, Boffelli D, Gartner ZJ, Klein OD. PMID: 37643009; PMCID: PMC10575728.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    6. Loss of PPARγ activity characterizes early protumorigenic stromal reprogramming and dictates the therapeutic window of opportunity. Proc Natl Acad Sci U S A. 2023 10 17; 120(42):e2303774120. Caruso JA, Wang X, Murrow LM, Rodriguez CI, Chen-Tanyolac C, Vu L, Chen YY, Gascard P, Gartner ZJ, Kerlikowske K, Tlsty TD. PMID: 37816052; PMCID: PMC10589683.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    7. Epithelial zonation along the mouse and human small intestine defines five discrete metabolic domains. bioRxiv. 2023 Sep 22. Zwick RK, Kasparek P, Palikuqi B, Viragova S, Weichselbaum L, McGinnis CS, McKinley KL, Rathnayake A, Vaka D, Nguyen V, Trentesaux C, Reyes E, Gupta AR, Gartner ZJ, Locksley RM, Gardner JM, Itzkovitz S, Boffelli D, Klein OD. PMID: 37790430; PMCID: PMC10542170.
      View in: PubMed   Mentions:
    8. Patterning and folding of intestinal villi by active mesenchymal dewetting. bioRxiv. 2023 Aug 15. Huycke TR, Miyazaki H, Häkkinen TJ, Srivastava V, Barruet E, McGinnis CS, Kalantari A, Cornwall-Scoones J, Vaka D, Zhu Q, Jo H, DeGrado WF, Thomson M, Garikipati K, Boffelli D, Klein OD, Gartner ZJ. PMID: 37425793; PMCID: PMC10326967.
      View in: PubMed   Mentions:
    9. Configurational entropy is an intrinsic driver of tissue structural heterogeneity. bioRxiv. 2023 Jul 02. Srivastava V, Hu JL, Garbe JC, Veytsman B, Shalabi SF, Yllanes D, Thomson M, LaBarge MA, Huber G, Gartner ZJ. PMID: 37425903; PMCID: PMC10327153.
      View in: PubMed   Mentions:
    10. D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response. bioRxiv. 2023 May 20. Jiang J, Chen S, Tsou T, McGinnis CS, Khazaei T, Zhu Q, Park JH, Strazhnik IM, Hanna J, Chow ED, Sivak DA, Gartner ZJ, Thomson M. PMID: 37131803; PMCID: PMC10153191.
      View in: PubMed   Mentions:
    11. Modeling collective cell behavior in cancer: Perspectives from an interdisciplinary conversation. Cell Syst. 2023 04 19; 14(4):252-257. Adler FR, Anderson ARA, Bhushan A, Bogdan P, Bravo-Cordero JJ, Brock A, Chen Y, Cukierman E, DelGiorno KE, Denis GV, Ferrall-Fairbanks MC, Gartner ZJ, Germain RN, Gordon DM, Hunter G, Jolly MK, Karacosta LG, Mythreye K, Katira P, Kulkarni RP, Kutys ML, Lander AD, Laughney AM, Levine H, Lou E, Lowenstein PR, Masters KS, Pe'er D, Peyton SR, Platt MO, Purvis JE, Quon G, Richer JK, Riddle NC, Rodriguez A, Snyder JC, Lee Szeto G, Tomlin CJ, Yanai I, Zervantonakis IK, Dueck H. PMID: 37080161; PMCID: PMC10760508.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    12. deMULTIplex2: robust sample demultiplexing for scRNA-seq. bioRxiv. 2023 Apr 12. Zhu Q, Conrad DN, Gartner ZJ. PMID: 37090649; PMCID: PMC10120618.
      View in: PubMed   Mentions:
    13. Microfluidics-free single-cell genomics with templated emulsification. Nat Biotechnol. 2023 Nov; 41(11):1557-1566. Clark IC, Fontanez KM, Meltzer RH, Xue Y, Hayford C, May-Zhang A, D'Amato C, Osman A, Zhang JQ, Hettige P, Ishibashi JSA, Delley CL, Weisgerber DW, Replogle JM, Jost M, Phong KT, Kennedy VE, Peretz CAC, Kim EA, Song S, Karlon W, Weissman JS, Smith CC, Gartner ZJ, Abate AR. PMID: 36879006; PMCID: PMC10635830.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    14. Programming the Self-Organization of Endothelial Cells into Perfusable Microvasculature. Tissue Eng Part A. 2023 02; 29(3-4):80-92. Cabral KA, Srivastava V, Graham AJ, Coyle MC, Stashko C, Weaver V, Gartner ZJ. PMID: 36181350; PMCID: PMC10266707.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    15. Adherens junctions organize size-selective proteolytic hotspots critical for Notch signalling. Nat Cell Biol. 2022 12; 24(12):1739-1753. Kwak M, Southard KM, Kim WR, Lin A, Kim NH, Gopalappa R, Lee HJ, An M, Choi SH, Jung Y, Noh K, Farlow J, Georgakopoulos A, Robakis NK, Kang MK, Kutys ML, Seo D, Kim HH, Kim YH, Cheon J, Gartner ZJ, Jun YW. PMID: 36456828; PMCID: PMC10665132.
      View in: PubMed   Mentions: 5     Fields:    
    16. Single-cell profiling of environmental enteropathy reveals signatures of epithelial remodeling and immune activation. Sci Transl Med. 2022 08 31; 14(660):eabi8633. Kummerlowe C, Mwakamui S, Hughes TK, Mulugeta N, Mudenda V, Besa E, Zyambo K, Shay JES, Fleming I, Vukovic M, Doran BA, Aicher TP, Wadsworth MH, Bramante JT, Uchida AM, Fardoos R, Asowata OE, Herbert N, Yilmaz ÖH, Kløverpris HN, Garber JJ, Ordovas-Montañes J, Gartner ZJ, Wallach T, Shalek AK, Kelly P. PMID: 36044598; PMCID: PMC9594855.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    17. A reductionist approach to determine the effect of cell-cell contact on human epidermal stem cell differentiation. Acta Biomater. 2022 09 15; 150:265-276. Louis B, Tewary M, Bremer AW, Philippeos C, Negri VA, Zijl S, Gartner ZJ, Schaffer DV, Watt FM. PMID: 35926780.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    18. Mapping hormone-regulated cell-cell interaction networks in the human breast at single-cell resolution. Cell Syst. 2022 08 17; 13(8):644-664.e8. Murrow LM, Weber RJ, Caruso JA, McGinnis CS, Phong K, Gascard P, Rabadam G, Borowsky AD, Desai TA, Thomson M, Tlsty T, Gartner ZJ. PMID: 35863345; PMCID: PMC9590200.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    19. Systematically quantifying morphological features reveals constraints on organoid phenotypes. Cell Syst. 2022 07 20; 13(7):547-560.e3. Beck LE, Lee J, Coté C, Dunagin MC, Lukonin I, Salla N, Chang MK, Hughes AJ, Mornin JD, Gartner ZJ, Liberali P, Raj A. PMID: 35705097; PMCID: PMC9350855.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    20. Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution. Cell. 2022 05 26; 185(11):1905-1923.e25. Yang D, Jones MG, Naranjo S, Rideout WM, Min KHJ, Ho R, Wu W, Replogle JM, Page JL, Quinn JJ, Horns F, Qiu X, Chen MZ, Freed-Pastor WA, McGinnis CS, Patterson DM, Gartner ZJ, Chow ED, Bivona TG, Chan MM, Yosef N, Jacks T, Weissman JS. PMID: 35523183; PMCID: PMC9452598.
      View in: PubMed   Mentions: 49     Fields:    Translation:Animals
    21. Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia. Proc Natl Acad Sci U S A. 2022 04 12; 119(15):e2108760119. Su-Feher L, Rubin AN, Silberberg SN, Catta-Preta R, Lim KJ, Ypsilanti AR, Zdilar I, McGinnis CS, McKinsey GL, Rubino TE, Hawrylycz MJ, Thompson C, Gartner ZJ, Puelles L, Zeng H, Rubenstein JLR, Nord AS. PMID: 35377797; PMCID: PMC9169651.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    22. Bisphenol A replacement chemicals, BPF and BPS, induce protumorigenic changes in human mammary gland organoid morphology and proteome. Proc Natl Acad Sci U S A. 2022 03 15; 119(11):e2115308119. Winkler J, Liu P, Phong K, Hinrichs JH, Ataii N, Williams K, Hadler-Olsen E, Samson S, Gartner ZJ, Fisher S, Werb Z. PMID: 35263230; PMCID: PMC8931256.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    23. Abstract P5-06-02: A gene expression meta-analysis identifies microenvironment differences in cellular composition and cell-cell interactions associated with breast cancer invasion. Cancer Research. 2022 Feb 15; 82(4_Supplement):p5-06-02-p5-06-02. Officer OA, Dempsey DA, Hasteh HF, Slyper SM, Segerstolpe SA, Klughammer KJ, Jane-Valbuena JJ, Rozenblatt-Rosen RO, Murrow ML, Gartner GZ, Regev RA, Yau YC, Tamayo TP, Harismendy HO. .
      View in: Publisher Site   Mentions:
    24. Setting boundaries for tissue patterning. Science. 2022 Jan 07; 375(6576):26-27. Huycke TR, Gartner ZJ. PMID: 34990228.
      View in: PubMed   Mentions:    Fields:    
    25. Single-Cell Protein Profiling by Microdroplet Barcoding and Next-Generation Sequencing. Methods Mol Biol. 2022; 2386:101-111. Kim SC, Haliburton JR, Gartner ZJ, Abate AR. PMID: 34766267; PMCID: PMC9122841.
      View in: PubMed   Mentions:    Fields:    
    26. Membrane compartmentalization by adherens junctions creates a spatial switch for Notch signaling and function. . 2021 Nov 1. Kwak KM, Southard SK, Kim KW, Lin LA, Kim KN, Gopalappa GR, An AM, Lee LH, Choi CS, Farlow FJ, Georgakopoulos GA, Robakis RN, Kang KM, Kutys KM, Seo SD, Kim KH, Kim KY, Cheon CJ, Gartner GZ, Jun JY. .
      View in: Publisher Site   Mentions:
    27. Human microglia states are conserved across experimental models and regulate neural stem cell responses in chimeric organoids. Cell Stem Cell. 2021 12 02; 28(12):2153-2166.e6. Popova G, Soliman SS, Kim CN, Keefe MG, Hennick KM, Jain S, Li T, Tejera D, Shin D, Chhun BB, McGinnis CS, Speir M, Gartner ZJ, Mehta SB, Haeussler M, Hengen KB, Ransohoff RR, Piao X, Nowakowski TJ. PMID: 34536354; PMCID: PMC8642295.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansCells
    28. AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data. Genome Biol. 2021 09 01; 22(1):252. Thibodeau A, Eroglu A, McGinnis CS, Lawlor N, Nehar-Belaid D, Kursawe R, Marches R, Conrad DN, Kuchel GA, Gartner ZJ, Banchereau J, Stitzel ML, Cicek AE, Ucar D. PMID: 34465366; PMCID: PMC8408950.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    29. EPH/EPHRIN regulates cellular organization by actomyosin contractility effects on cell contacts. J Cell Biol. 2021 06 07; 220(6). Kindberg AA, Srivastava V, Muncie JM, Weaver VM, Gartner ZJ, Bush JO. PMID: 33798261; PMCID: PMC8025214.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    30. Commitment and oncogene-induced plasticity of human stem cell-derived pancreatic acinar and ductal organoids. Cell Stem Cell. 2021 06 03; 28(6):1090-1104.e6. Huang L, Desai R, Conrad DN, Leite NC, Akshinthala D, Lim CM, Gonzalez R, Muthuswamy LB, Gartner Z, Muthuswamy SK. PMID: 33915081; PMCID: PMC8202734.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansCells
    31. Roadmap for the multiscale coupling of biochemical and mechanical signals during development. Phys Biol. 2021 04 14; 18(4). Lenne PF, Munro E, Heemskerk I, Warmflash A, Bocanegra-Moreno L, Kishi K, Kicheva A, Long Y, Fruleux A, Boudaoud A, Saunders TE, Caldarelli P, Michaut A, Gros J, Maroudas-Sacks Y, Keren K, Hannezo E, Gartner ZJ, Stormo B, Gladfelter A, Rodrigues A, Shyer A, Minc N, Maître JL, Di Talia S, Khamaisi B, Sprinzak D, Tlili S. PMID: 33276350; PMCID: PMC8380410.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    32. T cell circuits that sense antigen density with an ultrasensitive threshold. Science. 2021 03 12; 371(6534):1166-1171. Hernandez-Lopez RA, Yu W, Cabral KA, Creasey OA, Lopez Pazmino MDP, Tonai Y, De Guzman A, Mäkelä A, Saksela K, Gartner ZJ, Lim WA. PMID: 33632893; PMCID: PMC8025675.
      View in: PubMed   Mentions: 55     Fields:    Translation:HumansAnimalsCells
    33. Simple, Affordable, and Modular Patterning of Cells using DNA. J Vis Exp. 2021 02 24; (168). Cabral KA, Patterson DM, Scheideler OJ, Cole R, Abate AR, Schaffer DV, Sohn LL, Gartner ZJ. PMID: 33720126; PMCID: PMC10870346.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    34. Simple, Affordable, and Modular Patterning of Cells using DNA. Journal of Visualized Experiments. 2021 Feb 24; (168). Cabral CK, Patterson PD, Scheideler SO, Cole CR, Abate AA, Schaffer SD, Sohn SL, Gartner GZ. .
      View in: Publisher Site   Mentions:
    35. High diversity droplet microfluidic libraries generated with a commercial liquid spotter. Sci Rep. 2021 02 23; 11(1):4351. Zhang JQ, Siltanen CA, Dolatmoradi A, Sun C, Chang KC, Cole RH, Gartner ZJ, Abate AR. PMID: 33623093; PMCID: PMC7902812.
      View in: PubMed   Mentions: 1     Fields:    
    36. Expanding the boundaries of synthetic development. Dev Biol. 2021 06; 474:62-70. Martyn I, Gartner ZJ. PMID: 33587913; PMCID: PMC8052276.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    37. Identifying Enthalpic Barriers to Entropically-Driven Structural Disruption in Breast Cancers. Biophysical Journal. 2021 Feb 1; 120(3):196a. Srivastava SV, Hu HJ, Garbe GJ, Stampfer SM, LaBarge LM, Thomson TM, Gartner GZ. .
      View in: Publisher Site   Mentions:
    38. No detectable alloreactive transcriptional responses under standard sample preparation conditions during donor-multiplexed single-cell RNA sequencing of peripheral blood mononuclear cells. BMC Biol. 2021 01 20; 19(1):10. McGinnis CS, Siegel DA, Xie G, Hartoularos G, Stone M, Ye CJ, Gartner ZJ, Roan NR, Lee SA. PMID: 33472616; PMCID: PMC7816397.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    39. Guiding tissue-scale self-organization. Nat Mater. 2021 01; 20(1):2-3. Gartner ZJ, Hu JL. PMID: 33340008.
      View in: PubMed   Mentions: 1     Fields:    
    40. Abstract 351: Alterations in immune cell signatures during breast cancer metastasis at single cell resolution. Cancer Research. 2020 Aug 15; 80(16_Supplement):351-351. Winkler WJ, Tan TW, McGinnis MC, Gartner GZ, Darmanis DS, Werb WZ. .
      View in: Publisher Site   Mentions:
    41. ZipSeq: barcoding for real-time mapping of single cell transcriptomes. Nat Methods. 2020 08; 17(8):833-843. Hu KH, Eichorst JP, McGinnis CS, Patterson DM, Chow ED, Kersten K, Jameson SC, Gartner ZJ, Rao AA, Krummel MF. PMID: 32632238; PMCID: PMC7891292.
      View in: PubMed   Mentions: 52     Fields:    Translation:AnimalsCells
    42. Organoid models for mammary gland dynamics and breast cancer. Curr Opin Cell Biol. 2020 10; 66:51-58. Srivastava V, Huycke TR, Phong KT, Gartner ZJ. PMID: 32535255; PMCID: PMC8175015.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimals
    43. 2063-P: Quantitative Analysis of Human and Mouse Islet Tissue Structure. Diabetes. 2020 Jun 1; 69(Supplement 1):2063-p. CREASEY CO, SNEDDON SJ, GARTNER GZ. .
      View in: Publisher Site   Mentions:
    44. High Throughput Yeast Strain Phenotyping with Droplet-Based RNA Sequencing. J Vis Exp. 2020 05 21; (159). Zhang JQ, Chang KC, Liu L, Gartner ZJ, Abate AR. PMID: 32510483.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    45. High Throughput Yeast Strain Phenotyping with Droplet-Based RNA Sequencing. Journal of Visualized Experiments. 2020 May 21; (159). Zhang ZJ, Chang CK, Liu LL, Gartner GZ, Abate AA. .
      View in: Publisher Site   Mentions:
    46. Linked optical and gene expression profiling of single cells at high-throughput. Genome Biol. 2020 02 24; 21(1):49. Zhang JQ, Siltanen CA, Liu L, Chang KC, Gartner ZJ, Abate AR. PMID: 32093753; PMCID: PMC7041248.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    47. Balancing Act: Cell Polarity and Shape Compete to Ensure Robust Development. Dev Cell. 2019 12 02; 51(5):545-547. Murrow LM, Gartner ZJ. PMID: 31794715.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    48. Antibody-Drug Conjugates Targeting the Urokinase Receptor (uPAR) as a Possible Treatment of Aggressive Breast Cancer. Antibodies (Basel). 2019 Nov 05; 8(4). Harel ET, Drake PM, Barfield RM, Lui I, Farr-Jones S, Van't Veer L, Gartner ZJ, Green EM, Lourenço AL, Cheng Y, Hann BC, Rabuka D, Craik CS. PMID: 31694242; PMCID: PMC6963874.
      View in: PubMed   Mentions: 10  
    49. Getting the measure of living biomaterials. Nature. 2019 08; 572(7767):38-39. Gartner Z, Hughes A. PMID: 31358937.
      View in: PubMed   Mentions: 1     Fields:    
    50. MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices. Nat Methods. 2019 07; 16(7):619-626. McGinnis CS, Patterson DM, Winkler J, Conrad DN, Hein MY, Srivastava V, Hu JL, Murrow LM, Weissman JS, Werb Z, Chow ED, Gartner ZJ. PMID: 31209384; PMCID: PMC6837808.
      View in: PubMed   Mentions: 205     Fields:    Translation:HumansAnimalsCells
    51. 2151-P: Quantification of Tissue Structure in Human and Mouse Islets. Diabetes. 2019 Jun 1; 68(Supplement 1):2151-p. CREASEY CO, ELNATAN ED, SNEDDON SJ, GARTNER GZ. .
      View in: Publisher Site   Mentions:
    52. Human organoids: a new dimension in cell biology. Mol Biol Cell. 2019 05 01; 30(10):1129-1137. Lehmann R, Lee CM, Shugart EC, Benedetti M, Charo RA, Gartner Z, Hogan B, Knoblich J, Nelson CM, Wilson KM. PMID: 31034354; PMCID: PMC6724519.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansAnimalsCells
    53. DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors. Cell Syst. 2019 04 24; 8(4):329-337.e4. McGinnis CS, Murrow LM, Gartner ZJ. PMID: 30954475; PMCID: PMC6853612.
      View in: PubMed   Mentions: 848     Fields:    Translation:Humans
    54. Paracrine costimulation of IFN-γ signaling by integrins modulates CD8 T cell differentiation. Proc Natl Acad Sci U S A. 2018 11 06; 115(45):11585-11590. Krummel MF, Mahale JN, Uhl LFK, Hardison EA, Mujal AM, Mazet JM, Weber RJ, Gartner ZJ, Gérard A. PMID: 30348790; PMCID: PMC6233119.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    55. Cell-Specific Chemical Delivery Using a Selective Nitroreductase-Nitroaryl Pair. ACS Chem Biol. 2018 10 19; 13(10):2888-2896. Gruber TD, Krishnamurthy C, Grimm JB, Tadross MR, Wysocki LM, Gartner ZJ, Lavis LD. PMID: 30111097.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    56. Quanti.us: a tool for rapid, flexible, crowd-based annotation of images. Nat Methods. 2018 08; 15(8):587-590. Hughes AJ, Mornin JD, Biswas SK, Beck LE, Bauer DP, Raj A, Bianco S, Gartner ZJ. PMID: 30065368; PMCID: PMC8863499.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimals
    57. An Oil-Free Picodrop Bioassay Platform for Synthetic Biology. Sci Rep. 2018 05 21; 8(1):7913. Siltanen CA, Cole RH, Poust S, Chao L, Tyerman J, Kaufmann-Malaga B, Ubersax J, Gartner ZJ, Abate AR. PMID: 29784937; PMCID: PMC5962535.
      View in: PubMed   Mentions: 9     Fields:    Translation:Animals
    58. Characterizing cellular mechanical phenotypes with mechano-node-pore sensing. Microsyst Nanoeng. 2018; 4. Kim J, Han S, Lei A, Miyano M, Bloom J, Srivastava V, Stampfer MM, Gartner ZJ, LaBarge MA, Sohn LL. PMID: 29780657; PMCID: PMC5958920.
      View in: PubMed   Mentions: 15  
    59. Phosphorylated EGFR Dimers Are Not Sufficient to Activate Ras. Cell Rep. 2018 03 06; 22(10):2593-2600. Liang SI, van Lengerich B, Eichel K, Cha M, Patterson DM, Yoon TY, von Zastrow M, Jura N, Gartner ZJ. PMID: 29514089; PMCID: PMC5916813.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansCells
    60. Engineered Tissue Folding by Mechanical Compaction of the Mesenchyme. Dev Cell. 2018 01 22; 44(2):165-178.e6. Hughes AJ, Miyazaki H, Coyle MC, Zhang J, Laurie MT, Chu D, Vavrušová Z, Schneider RA, Klein OD, Gartner ZJ. PMID: 29290586; PMCID: PMC5826757.
      View in: PubMed   Mentions: 69     Fields:    Translation:AnimalsCells
    61. Opportunities for organoids as new models of aging. J Cell Biol. 2018 01 02; 217(1):39-50. Hu JL, Todhunter ME, LaBarge MA, Gartner ZJ. PMID: 29263081; PMCID: PMC5748992.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansAnimalsCells
    62. Single-cell mechanogenetics using monovalent magnetoplasmonic nanoparticles. Nat Protoc. 2017 Sep; 12(9):1871-1889. Kim JW, Seo D, Lee JU, Southard KM, Lim Y, Kim D, Gartner ZJ, Jun YW, Cheon J. PMID: 28817122; PMCID: PMC5742362.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    63. Printed droplet microfluidics for on demand dispensing of picoliter droplets and cells. Proc Natl Acad Sci U S A. 2017 08 15; 114(33):8728-8733. Cole RH, Tang SY, Siltanen CA, Shahi P, Zhang JQ, Poust S, Gartner ZJ, Abate AR. PMID: 28760972; PMCID: PMC5565430.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansCells
    64. A Mechanogenetic Toolkit for Interrogating Cell Signaling in Space and Time. Cell. 2017 06 15; 169(7):1357. Seo D, Southard KM, Kim JW, Lee HJ, Farlow J, Lee JU, Litt DB, Haas T, Alivisatos AP, Cheon J, Gartner ZJ, Jun YW. PMID: 28622515.
      View in: PubMed   Mentions: 3     Fields:    
    65. Unraveling cell-to-cell signaling networks with chemical biology. Nat Chem Biol. 2017 05 17; 13(6):564-568. Gartner ZJ, Prescher JA, Lavis LD. PMID: 28514428.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    66. A DNA-Based T Cell Receptor Reveals a Role for Receptor Clustering in Ligand Discrimination. Cell. 2017 03 23; 169(1):108-119.e20. Taylor MJ, Husain K, Gartner ZJ, Mayor S, Vale RD. PMID: 28340336; PMCID: PMC6934412.
      View in: PubMed   Mentions: 65     Fields:    Translation:HumansCells
    67. Dissecting the stem cell niche with organoid models: an engineering-based approach. Development. 2017 03 15; 144(6):998-1007. Murrow LM, Weber RJ, Gartner ZJ. PMID: 28292846; PMCID: PMC5358107.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansAnimalsCells
    68. Non-autonomous cell proliferation in the mammary gland and cancer. Curr Opin Cell Biol. 2017 04; 45:55-61. Weber RJ, Desai TA, Gartner ZJ. PMID: 28314237; PMCID: PMC8811621.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    69. Abseq: Ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding. Sci Rep. 2017 03 14; 7:44447. Shahi P, Kim SC, Haliburton JR, Gartner ZJ, Abate AR. PMID: 28290550; PMCID: PMC5349531.
      View in: PubMed   Mentions: 106     Fields:    Translation:Humans
    70. 192 Diagnosis and therapy of aggressive breast cancers by targeting urokinase receptor. European Journal of Cancer. 2016 Dec 1; 69:s68. Harel HE, Liang LS, Brain BS, Gartner GZ, Veer VL, Craik CC. .
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    71. Effects of cell type and configuration on anabolic and catabolic activity in 3D co-culture of mesenchymal stem cells and nucleus pulposus cells. J Orthop Res. 2017 01; 35(1):61-73. Ouyang A, Cerchiari AE, Tang X, Liebenberg E, Alliston T, Gartner ZJ, Lotz JC. PMID: 27699833; PMCID: PMC5258652.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    72. Rapid Organoid Reconstitution by Chemical Micromolding. ACS Biomater Sci Eng. 2016 Nov 14; 2(11):1851-1855. Weber RJ, Cerchiari AE, Delannoy LS, Garbe JC, LaBarge MA, Desai TA, Gartner ZJ. PMID: 33440521.
      View in: PubMed   Mentions: 3     Fields:    
    73. Probing the luminal microenvironment of reconstituted epithelial microtissues. Sci Rep. 2016 09 13; 6:33148. Cerchiari AE, Samy KE, Todhunter ME, Schlesinger E, Henise J, Rieken C, Gartner ZJ, Desai TA. PMID: 27619235; PMCID: PMC5020616.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    74. Fabrication of 3-D Reconstituted Organoid Arrays by DNA-Programmed Assembly of Cells (DPAC). Curr Protoc Chem Biol. 2016 09 13; 8(3):147-178. Todhunter ME, Weber RJ, Farlow J, Jee NY, Cerchiari AE, Gartner ZJ. PMID: 27622567; PMCID: PMC5183975.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    75. A Mechanogenetic Toolkit for Interrogating Cell Signaling in Space and Time. Cell. 2016 Jun 02; 165(6):1507-1518. Seo D, Southard KM, Kim JW, Lee HJ, Farlow J, Lee JU, Litt DB, Haas T, Alivisatos AP, Cheon J, Gartner ZJ, Jun YW. PMID: 27180907; PMCID: PMC4892966.
      View in: PubMed   Mentions: 66     Fields:    Translation:HumansCells
    76. Multicolor Fluorescence Detection for Droplet Microfluidics Using Optical Fibers. J Vis Exp. 2016 05 05; (111). Cole RH, Gartner ZJ, Abate AR. PMID: 27214249; PMCID: PMC4942052.
      View in: PubMed   Mentions: 9     Fields:    
    77. Multicolor Fluorescence Detection for Droplet Microfluidics Using Optical Fibers. Journal of Visualized Experiments. 2016 May 5; (111). Cole CR, Gartner GZ, Abate AA. .
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    78. Mysteries in a Minimal Genome. ACS Cent Sci. 2016 May 25; 2(5):274-7. Coyle M, Hu J, Gartner Z. PMID: 27280161; PMCID: PMC4882734.
      View in: PubMed   Mentions: 2  
    79. Interrogating cellular fate decisions with high-throughput arrays of multiplexed cellular communities. Nat Commun. 2016 Jan 12; 7:10309. Chen S, Bremer AW, Scheideler OJ, Na YS, Todhunter ME, Hsiao S, Bomdica PR, Maharbiz MM, Gartner ZJ, Schaffer DV. PMID: 26754526; PMCID: PMC4729920.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimalsCells
    80. Coupling between apical tension and basal adhesion allow epithelia to collectively sense and respond to substrate topography over long distances. Integr Biol (Camb). 2015 Dec; 7(12):1611-21. Broaders KE, Cerchiari AE, Gartner ZJ. PMID: 26507156; PMCID: PMC4666816.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    81. Programmed synthesis of three-dimensional tissues. Nat Methods. 2015 Oct; 12(10):975-81. Todhunter ME, Jee NY, Hughes AJ, Coyle MC, Cerchiari A, Farlow J, Garbe JC, LaBarge MA, Desai TA, Gartner ZJ. PMID: 26322836; PMCID: PMC4589502.
      View in: PubMed   Mentions: 89     Fields:    Translation:HumansCells
    82. Compact and modular multicolour fluorescence detector for droplet microfluidics. Lab Chip. 2015 Jul 07; 15(13):2754-8. Cole RH, de Lange N, Gartner ZJ, Abate AR. PMID: 26032595; PMCID: PMC4505729.
      View in: PubMed   Mentions: 9     Fields:    
    83. A strategy for tissue self-organization that is robust to cellular heterogeneity and plasticity. Proc Natl Acad Sci U S A. 2015 Feb 17; 112(7):2287-92. Cerchiari AE, Garbe JC, Jee NY, Todhunter ME, Broaders KE, Peehl DM, Desai TA, LaBarge MA, Thomson M, Gartner ZJ. PMID: 25633040; PMCID: PMC4343104.
      View in: PubMed   Mentions: 51     Fields:    Translation:HumansCells
    84. Formation of spatially and geometrically controlled three-dimensional tissues in soft gels by sacrificial micromolding. Tissue Eng Part C Methods. 2015 Jun; 21(6):541-7. Cerchiari A, Garbe JC, Todhunter ME, Jee NY, Pinney JR, LaBarge MA, Desai TA, Gartner ZJ. PMID: 25351430; PMCID: PMC4442595.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    85. Efficient targeting of fatty-acid modified oligonucleotides to live cell membranes through stepwise assembly. Biomacromolecules. 2014 Dec 08; 15(12):4621-6. Weber RJ, Liang SI, Selden NS, Desai TA, Gartner ZJ. PMID: 25325667; PMCID: PMC4261982.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansCells
    86. Production and targeting of monovalent quantum dots. J Vis Exp. 2014 Oct 23; (92):e52198. Seo D, Farlow J, Southard K, Jun YW, Gartner ZJ. PMID: 25407345; PMCID: PMC4309134.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    87. Production and Targeting of Monovalent Quantum Dots. Journal of Visualized Experiments. 2014 Oct 23; (92). Seo SD, Farlow FJ, Southard SK, Jun JY, Gartner GZ. .
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    88. A modular approach for assembling aldehyde-tagged proteins on DNA scaffolds. J Am Chem Soc. 2014 Aug 06; 136(31):10850-3. Liang SI, McFarland JM, Rabuka D, Gartner ZJ. PMID: 25029632; PMCID: PMC4132959.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    89. Cells: Shaping tissues and organs. Mol Biol Cell. 2014 Mar; 25(6):730. Rosenblatt J, Gartner Z. PMID: 24626844; PMCID: PMC3952838.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    90. Regulating Spatiotemporal Dynamics of Notch Signaling in Live Cells via Magnetoplasmonic Nanoprobes. Biophysical Journal. 2014 Jan 1; 106(2):224a. Seo SD, Kim KJ, Farlow FJ, Lee LH, Alivisatos AP, Cheon CJ, Gartner GZ, Jun JY. .
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    91. Formation of targeted monovalent quantum dots by steric exclusion. Nat Methods. 2013 Dec; 10(12):1203-5. Farlow J, Seo D, Broaders KE, Taylor MJ, Gartner ZJ, Jun YW. PMID: 24122039; PMCID: PMC3968776.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansCells
    92. Mycobacterium tuberculosis Rv3406 is a type II alkyl sulfatase capable of sulfate scavenging. PLoS One. 2013; 8(6):e65080. Sogi KM, Gartner ZJ, Breidenbach MA, Appel MJ, Schelle MW, Bertozzi CR. PMID: 23762287; PMCID: PMC3675115.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    93. Directing the assembly of spatially organized multicomponent tissues from the bottom up. Trends Cell Biol. 2012 Dec; 22(12):683-91. Liu JS, Gartner ZJ. PMID: 23067679; PMCID: PMC3505240.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimalsCells
    94. Programmed cell-to-cell variability in Ras activity triggers emergent behaviors during mammary epithelial morphogenesis. Cell Rep. 2012 Nov 29; 2(5):1461-70. Liu JS, Farlow JT, Paulson AK, Labarge MA, Gartner ZJ. PMID: 23041312; PMCID: PMC3634587.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansAnimalsCells
    95. Cellular microfabrication: observing intercellular interactions using lithographically-defined DNA capture sequences. Langmuir. 2012 May 29; 28(21):8120-6. Onoe H, Hsiao SC, Douglas ES, Gartner ZJ, Bertozzi CR, Francis MB, Mathies RA. PMID: 22512362.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    96. Chemically programmed cell adhesion with membrane-anchored oligonucleotides. J Am Chem Soc. 2012 Jan 18; 134(2):765-8. Selden NS, Todhunter ME, Jee NY, Liu JS, Broaders KE, Gartner ZJ. PMID: 22176556; PMCID: PMC3280587.
      View in: PubMed   Mentions: 47     Fields:    Translation:HumansAnimalsCells
    97. Direct cell surface modification with DNA for the capture of primary cells and the investigation of myotube formation on defined patterns. Langmuir. 2009 Jun 16; 25(12):6985-91. Hsiao SC, Shum BJ, Onoe H, Douglas ES, Gartner ZJ, Mathies RA, Bertozzi CR, Francis MB. PMID: 19505164; PMCID: PMC2812030.
      View in: PubMed   Mentions: 51     Fields:    Translation:HumansCells
    98. Programmed assembly of 3-dimensional microtissues with defined cellular connectivity. Proc Natl Acad Sci U S A. 2009 Mar 24; 106(12):4606-10. Gartner ZJ, Bertozzi CR. PMID: 19273855; PMCID: PMC2660766.
      View in: PubMed   Mentions: 90     Fields:    Translation:HumansAnimalsCells
    99. Boron nitride nanotubes are noncytotoxic and can be functionalized for interaction with proteins and cells. J Am Chem Soc. 2009 Jan 28; 131(3):890-1. Chen X, Wu P, Rousseas M, Okawa D, Gartner Z, Zettl A, Bertozzi CR. PMID: 19119844; PMCID: PMC2657038.
      View in: PubMed   Mentions: 74     Fields:    Translation:HumansCells
    100. Evolutionary approaches for the discovery of functional synthetic small molecules. Pure and Applied Chemistry. 2006 Jan 1; 78(1):1-14. Gartner GZ. .
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    101. DNA-templated organic synthesis and selection of a library of macrocycles. Science. 2004 Sep 10; 305(5690):1601-5. Gartner ZJ, Tse BN, Grubina R, Doyon JB, Snyder TM, Liu DR. PMID: 15319493; PMCID: PMC2814051.
      View in: PubMed   Mentions: 116     Fields:    Translation:Cells
    102. Directed evolution of ligand dependence: small-molecule-activated protein splicing. Proc Natl Acad Sci U S A. 2004 Jul 20; 101(29):10505-10. Buskirk AR, Ong YC, Gartner ZJ, Liu DR. PMID: 15247421; PMCID: PMC489967.
      View in: PubMed   Mentions: 66     Fields:    Translation:AnimalsCells
    103. Translation of DNA into synthetic N-acyloxazolidines. J Am Chem Soc. 2004 Apr 28; 126(16):5090-2. Li X, Gartner ZJ, Tse BN, Liu DR. PMID: 15099091.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    104. Two enabling architectures for DNA-templated organic synthesis. Angew Chem Int Ed Engl. 2003 Mar 28; 42(12):1370-5. Gartner ZJ, Grubina R, Calderone CT, Liu DR. PMID: 12671971.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    105. Two Enabling Architectures for DNA-Templated Organic Synthesis. Angewandte Chemie. 2003 Mar 28; 115(12):1408-1413. Gartner GZ, Grubina GR, Calderone CC, Liu LD. .
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    106. Directing Otherwise Incompatible Reactions in a Single Solution by Using DNA-Templated Organic Synthesis. Angewandte Chemie. 2002 Nov 4; 114(21):4278-4282. Calderone CC, Puckett PJ, Gartner GZ, Liu LD. .
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    107. Expanding the Reaction Scope of DNA-Templated Synthesis . Angewandte Chemie. 2002 May 17; 114(10):1874-1878. Gartner GZ, Kanan KM, Liu LD. .
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    108. Expanding the reaction scope of DNA-templated synthesis. Angew Chem Int Ed Engl. 2002 May 17; 41(10):1796-800. Gartner ZJ, Kanan MW, Liu DR. PMID: 19750721.
      View in: PubMed   Mentions: 34     Fields:    Translation:Cells
    109. ChemInform Abstract: The Generality of DNA-Templated Synthesis as a Basis for Evolving Non-Natural Small Molecules. ChemInform. 2001 Oct 30; 32(44):no-no. Gartner GZ, Liu LD. .
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    110. The generality of DNA-templated synthesis as a basis for evolving non-natural small molecules. J Am Chem Soc. 2001 Jul 18; 123(28):6961-3. Gartner ZJ, Liu DR. PMID: 11448217; PMCID: PMC2820563.
      View in: PubMed   Mentions: 66     Fields:    Translation:Cells
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