John Rubenstein, MD, PhD

Title(s)Professor, Psychiatry
SchoolSchool of Medicine
Address1550 Fourth St
San Francisco CA 94158
Phone415-476-7872
ORCID ORCID Icon0000-0002-4414-7667 Additional info
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    Other Positions
    Title(s)UCSF Weill Institute for Neurosciences


    Collapse Biography 
    Collapse Education and Training
    StanfordBS1977Chemistry
    StanfordBiophysics1982Membrane Structure and Biogenesis
    StanfordMD1986
    Pasteur Institute, ParisPostdoc1986Mouse Embryology
    StanfordResidency1991Psychiatry
    Collapse Awards and Honors
    J. Comparative Neurology2021W. Maxwell Cowan Award for Developmental Neuroscience
    2020National Academy of Sciences
    UC Davis2018Ted Jones Neuroscience Lecture
    Brain & Behavior Research Foundation2016Ruane Prize for Outstanding Child and Adolescent Psychiatric Research
    2016National American Academy of Arts and Sciences
    American Psychiatric Association2016Ittleson Award for Research in Child and Adolescent Psychiatry
    Child Mind Institute2015Distinguished Scientist Award
    Columbia School of Medicine2015Heinrich Waelsch Memorial Neuroscience Lecturer
    Cajal Club2014Pinckney J. Harman Memorial Award in Cortical Development
    UCSF2013Faculty Lecturer Basic Science
    UCSF2012Royer Award for Excellence in Academic Psychiatry
    Cajal Club2008Cajal Club President
    2006National Academy of Medicine
    Cajal Club2004Krieg Cortical Discoverer Award
    AACAP1991Presidential Scholar Award for Research
    Stanford University1997Phi Beta Kappa
    Stanford University1977Honor in Chemistry

    Collapse Overview 

    Collapse Research 
    Collapse Research Activities and Funding
    Genetic Studies of Cortex Structure and Development
    NIH R01NS099099Sep 30, 2016 - Jun 30, 2026
    Role: Principal Investigator
    Identification of enhancers whose activity defines cortical interneuron types
    NIH U01MH105948Sep 26, 2014 - May 31, 2018
    Role: Principal Investigator
    Genetic Control of Basal Telencephalic Development
    NIH R01MH081880Dec 1, 2007 - Nov 30, 2023
    Role: Principal Investigator
    Genetic Regulation of Telencephalon Development
    NIH K05MH065670Jan 1, 2003 - Dec 31, 2007
    Role: Principal Investigator
    Regulation of craniofacial development by the Dix genes.
    NIH R01DC005667Jan 1, 2003 - Dec 31, 2007
    Role: Principal Investigator
    NKX HOMEOBOX GENE REGULATION OF VENTRAL CNS DEVELOPMENT
    NIH R01DA012462May 1, 1999 - Feb 28, 2005
    Role: Principal Investigator
    Genetic Studies of Cortex Structure and Development
    NIH R01NS034661Sep 1, 1996 - Jan 31, 2017
    Role: Principal Investigator
    FUNCTION OF DLX GENES IN FOREBRAIN DEVELOPMENT
    NIH R01MH051561Sep 30, 1994 - May 31, 2003
    Role: Principal Investigator
    GENETIC REGULATION OF TELENCEPHALON DEVELOPMENT
    NIH K02MH001046Jan 1, 1993 - Dec 31, 2002
    Role: Principal Investigator
    Genetic Regulation of Telencephalon Development
    NIH R01MH049428Jun 1, 1992 - Nov 30, 2022
    Role: Principal Investigator
    Genetic Regulation of Telencephalon Development
    NIH R37MH049428Jun 1, 1992 - Nov 30, 2017
    Role: Principal Investigator
    Bio-Organic Biomedical Mass Spectrometry Resource
    NIH P41RR001614Mar 1, 1982 - May 31, 2015
    Role: Co-Investigator

    Collapse ORNG Applications 
    Collapse Academic Senate

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. DLX1 and the NuRD complex cooperate in enhancer decommissioning and transcriptional repression. Development. 2022 06 01; 149(11). Price JD, Lindtner S, Ypsilanti A, Binyameen F, Johnson JR, Newton BW, Krogan NJ, Rubenstein JLR. PMID: 35695185; PMCID: PMC9245191.
      View in: PubMed   Mentions:    Fields:    
    2. Trans-Seq maps a selective mammalian retinotectal synapse instructed by Nephronectin. Nat Neurosci. 2022 05; 25(5):659-674. Tsai NY, Wang F, Toma K, Yin C, Takatoh J, Pai EL, Wu K, Matcham AC, Yin L, Dang EJ, Marciano DK, Rubenstein JL, Wang F, Ullian EM, Duan X. PMID: 35524141; PMCID: PMC9172271.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    3. Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia. Proc Natl Acad Sci U S A. 2022 04 12; 119(15):e2108760119. Su-Feher L, Rubin AN, Silberberg SN, Catta-Preta R, Lim KJ, Ypsilanti AR, Zdilar I, McGinnis CS, McKinsey GL, Rubino TE, Hawrylycz MJ, Thompson C, Gartner ZJ, Puelles L, Zeng H, Rubenstein JLR, Nord AS. PMID: 35377797; PMCID: PMC9169651.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    4. Dlx1/2-dependent expression of Meis2 promotes neuronal fate determination in the mammalian striatum. Development. 2022 02 15; 149(4). Su Z, Wang Z, Lindtner S, Yang L, Shang Z, Tian Y, Guo R, You Y, Zhou W, Rubenstein JL, Yang Z, Zhang Z. PMID: 35156680; PMCID: PMC8918808.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    5. LiCl treatment leads to long-term restoration of spine maturation and synaptogenesis in adult Tbr1 mutants. J Neurodev Disord. 2022 02 05; 14(1):11. Fazel Darbandi S, Nelson AD, Pai EL, Bender KJ, Rubenstein JLR. PMID: 35123407; PMCID: PMC8903688.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    6. Transcriptional network orchestrating regional patterning of cortical progenitors. Proc Natl Acad Sci U S A. 2021 12 21; 118(51). Ypsilanti AR, Pattabiraman K, Catta-Preta R, Golonzhka O, Lindtner S, Tang K, Jones IR, Abnousi A, Juric I, Hu M, Shen Y, Dickel DE, Visel A, Pennachio LA, Hawrylycz M, Thompson CL, Zeng H, Barozzi I, Nord AS, Rubenstein JL. PMID: 34921112; PMCID: PMC8713794.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    7. Autism risk gene POGZ promotes chromatin accessibility and expression of clustered synaptic genes. Cell Rep. 2021 12 07; 37(10):110089. Markenscoff-Papadimitriou E, Binyameen F, Whalen S, Price J, Lim K, Ypsilanti AR, Catta-Preta R, Pai EL, Mu X, Xu D, Pollard KS, Nord AS, State MW, Rubenstein JL. PMID: 34879283; PMCID: PMC9512081.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    8. Developmental dynamics of voltage-gated sodium channel isoform expression in the human and mouse brain. Genome Med. 2021 08 23; 13(1):135. Liang L, Fazel Darbandi S, Pochareddy S, Gulden FO, Gilson MC, Sheppard BK, Sahagun A, An JY, Werling DM, Rubenstein JLR, Sestan N, Bender KJ, Sanders SJ. PMID: 34425903; PMCID: PMC8383430.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    9. COUP-TFI specifies the medial entorhinal cortex identity and induces differential cell adhesion to determine the integrity of its boundary with neocortex. Sci Adv. 2021 07; 7(27). Feng J, Hsu WH, Patterson D, Tseng CS, Hsing HW, Zhuang ZH, Huang YT, Faedo A, Rubenstein JL, Touboul J, Chou SJ. PMID: 34215582.
      View in: PubMed   Mentions: 1     Fields:    
    10. Cracking the Codes of Cortical Glial Progenitors: Evidence for the Common Lineage of Astrocytes and Oligodendrocytes. Neurosci Bull. 2021 Apr; 37(6):437-439. Huang H, Rubenstein JL, Qiu M. PMID: 33847916; PMCID: PMC8055804.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    11. Ultraconserved enhancer function does not require perfect sequence conservation. Nat Genet. 2021 04; 53(4):521-528. Snetkova V, Ypsilanti AR, Akiyama JA, Mannion BJ, Plajzer-Frick I, Novak CS, Harrington AN, Pham QT, Kato M, Zhu Y, Godoy J, Meky E, Hunter RD, Shi M, Kvon EZ, Afzal V, Tran S, Rubenstein JLR, Visel A, Pennacchio LA, Dickel DE. PMID: 33782603; PMCID: PMC8038972.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    12. Constructing and optimizing 3D atlases from 2D data with application to the developing mouse brain. Elife. 2021 02 11; 10. Young DM, Fazel Darbandi S, Schwartz G, Bonzell Z, Yuruk D, Nojima M, Gole LC, Rubenstein JL, Yu W, Sanders SJ. PMID: 33570495; PMCID: PMC7994002.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    13. Gene regulatory networks controlling differentiation, survival, and diversification of hypothalamic Lhx6-expressing GABAergic neurons. Commun Biol. 2021 01 21; 4(1):95. Kim DW, Liu K, Wang ZQ, Zhang YS, Bathini A, Brown MP, Lin SH, Washington PW, Sun C, Lindtner S, Lee B, Wang H, Shimogori T, Rubenstein JLR, Blackshaw S. PMID: 33479483; PMCID: PMC7820013.
      View in: PubMed   Mentions: 7  Translation:AnimalsCells
    14. Regulatory Elements Inserted into AAVs Confer Preferential Activity in Cortical Interneurons. eNeuro. 2020 Nov/Dec; 7(6). Rubin AN, Malik R, Cho KKA, Lim KJ, Lindtner S, Robinson Schwartz SE, Vogt D, Sohal VS, Rubenstein JLR. PMID: 33199411; PMCID: PMC7768279.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    15. Altered hippocampal-prefrontal communication during anxiety-related avoidance in mice deficient for the autism-associated gene Pogz. Elife. 2020 11 06; 9. Cunniff MM, Markenscoff-Papadimitriou E, Ostrowski J, Rubenstein JL, Sohal VS. PMID: 33155545; PMCID: PMC7682992.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    16. A Chromatin Accessibility Atlas of the Developing Human Telencephalon. Cell. 2020 08 06; 182(3):754-769.e18. Markenscoff-Papadimitriou E, Whalen S, Przytycki P, Thomas R, Binyameen F, Nowakowski TJ, Kriegstein AR, Sanders SJ, State MW, Pollard KS, Rubenstein JL. PMID: 32610082; PMCID: PMC7415678.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansAnimalsCells
    17. LacZ-reporter mapping of Dlx5/6 expression and genoarchitectural analysis of the postnatal mouse prethalamus. J Comp Neurol. 2021 02; 529(2):367-420. Puelles L, Diaz C, Stühmer T, Ferran JL, Martínez-de la Torre M, Rubenstein JLR. PMID: 32420617; PMCID: PMC7671952.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    18. Maf and Mafb control mouse pallial interneuron fate and maturation through neuropsychiatric disease gene regulation. Elife. 2020 05 26; 9. Pai EL, Chen J, Fazel Darbandi S, Cho FS, Chen J, Lindtner S, Chu JS, Paz JT, Vogt D, Paredes MF, Rubenstein JL. PMID: 32452758; PMCID: PMC7282818.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    19. Enhancing WNT Signaling Restores Cortical Neuronal Spine Maturation and Synaptogenesis in Tbr1 Mutants. Cell Rep. 2020 04 14; 31(2):107495. Fazel Darbandi S, Robinson Schwartz SE, Pai EL, Everitt A, Turner ML, Cheyette BNR, Willsey AJ, State MW, Sohal VS, Rubenstein JLR. PMID: 32294447; PMCID: PMC7473600.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimalsCells
    20. Cortical Neural Stem Cell Lineage Progression Is Regulated by Extrinsic Signaling Molecule Sonic Hedgehog. Cell Rep. 2020 03 31; 30(13):4490-4504.e4. Zhang Y, Liu G, Guo T, Liang XG, Du H, Yang L, Bhaduri A, Li X, Xu Z, Zhang Z, Li Z, He M, Tsyporin J, Kriegstein AR, Rubenstein JL, Yang Z, Chen B. PMID: 32234482; PMCID: PMC7197103.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    21. Nf1 deletion results in depletion of the Lhx6 transcription factor and a specific loss of parvalbumin+ cortical interneurons. Proc Natl Acad Sci U S A. 2020 03 17; 117(11):6189-6195. Angara K, Pai EL, Bilinovich SM, Stafford AM, Nguyen JT, Li KX, Paul A, Rubenstein JL, Vogt D. PMID: 32123116; PMCID: PMC7084085.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    22. Optimizing Nervous System-Specific Gene Targeting with Cre Driver Lines: Prevalence of Germline Recombination and Influencing Factors. Neuron. 2020 04 08; 106(1):37-65.e5. Luo L, Ambrozkiewicz MC, Benseler F, Chen C, Dumontier E, Falkner S, Furlanis E, Gomez AM, Hoshina N, Huang WH, Hutchison MA, Itoh-Maruoka Y, Lavery LA, Li W, Maruo T, Motohashi J, Pai EL, Pelkey KA, Pereira A, Philips T, Sinclair JL, Stogsdill JA, Traunmüller L, Wang J, Wortel J, You W, Abumaria N, Beier KT, Brose N, Burgess HA, Cepko CL, Cloutier JF, Eroglu C, Goebbels S, Kaeser PS, Kay JN, Lu W, Luo L, Mandai K, McBain CJ, Nave KA, Prado MAM, Prado VF, Rothstein J, Rubenstein JLR, Saher G, Sakimura K, Sanes JR, Scheiffele P, Takai Y, Umemori H, Verhage M, Yuzaki M, Zoghbi HY, Kawabe H, Craig AM. PMID: 32027825; PMCID: PMC7377387.
      View in: PubMed   Mentions: 36     Fields:    Translation:AnimalsCells
    23. Interneuron Transplantation Rescues Social Behavior Deficits without Restoring Wild-Type Physiology in a Mouse Model of Autism with Excessive Synaptic Inhibition. J Neurosci. 2020 03 11; 40(11):2215-2227. Southwell DG, Seifikar H, Malik R, Lavi K, Vogt D, Rubenstein JL, Sohal VS. PMID: 31988060; PMCID: PMC7083289.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    24. Dlx1/2 are Central and Essential Components in the Transcriptional Code for Generating Olfactory Bulb Interneurons. Cereb Cortex. 2019 12 17; 29(11):4831-4849. Guo T, Liu G, Du H, Wen Y, Wei S, Li Z, Tao G, Shang Z, Song X, Zhang Z, Xu Z, You Y, Chen B, Rubenstein JL, Yang Z. PMID: 30796806; PMCID: PMC6917526.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    25. Functionally Distinct Connectivity of Developmentally Targeted Striosome Neurons. Cell Rep. 2019 11 05; 29(6):1419-1428.e5. McGregor MM, McKinsey GL, Girasole AE, Bair-Marshall CJ, Rubenstein JLR, Nelson AB. PMID: 31693884; PMCID: PMC6866662.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    26. Tsc1 represses parvalbumin expression and fast-spiking properties in somatostatin lineage cortical interneurons. Nat Commun. 2019 11 01; 10(1):4994. Malik R, Pai EL, Rubin AN, Stafford AM, Angara K, Minasi P, Rubenstein JL, Sohal VS, Vogt D. PMID: 31676823; PMCID: PMC6825152.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    27. Genomic Resolution of DLX-Orchestrated Transcriptional Circuits Driving Development of Forebrain GABAergic Neurons. Cell Rep. 2019 08 20; 28(8):2048-2063.e8. Lindtner S, Catta-Preta R, Tian H, Su-Feher L, Price JD, Dickel DE, Greiner V, Silberberg SN, McKinsey GL, McManus MT, Pennacchio LA, Visel A, Nord AS, Rubenstein JLR. PMID: 31433982; PMCID: PMC6750766.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    28. Immature excitatory neurons develop during adolescence in the human amygdala. Nat Commun. 2019 06 21; 10(1):2748. Sorrells SF, Paredes MF, Velmeshev D, Herranz-Pérez V, Sandoval K, Mayer S, Chang EF, Insausti R, Kriegstein AR, Rubenstein JL, Manuel Garcia-Verdugo J, Huang EJ, Alvarez-Buylla A. PMID: 31227709; PMCID: PMC6588589.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansCells
    29. Sp9 Regulates Medial Ganglionic Eminence-Derived Cortical Interneuron Development. Cereb Cortex. 2019 06 01; 29(6):2653-2667. Liu Z, Zhang Z, Lindtner S, Li Z, Xu Z, Wei S, Liang Q, Wen Y, Tao G, You Y, Chen B, Wang Y, Rubenstein JL, Yang Z. PMID: 29878134; PMCID: PMC6519701.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    30. Excitation-inhibition balance as a framework for investigating mechanisms in neuropsychiatric disorders. Mol Psychiatry. 2019 09; 24(9):1248-1257. Sohal VS, Rubenstein JLR. PMID: 31089192; PMCID: PMC6742424.
      View in: PubMed   Mentions: 157     Fields:    Translation:HumansAnimalsCells
    31. Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer. Mol Autism. 2019; 10:17. Forés-Martos J, Catalá-López F, Sánchez-Valle J, Ibáñez K, Tejero H, Palma-Gudiel H, Climent J, Pancaldi V, Fañanás L, Arango C, Parellada M, Baudot A, Vogt D, Rubenstein JL, Valencia A, Tabarés-Seisdedos R. PMID: 31007884; PMCID: PMC6454734.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    32. Mafb and c-Maf Have Prenatal Compensatory and Postnatal Antagonistic Roles in Cortical Interneuron Fate and Function. Cell Rep. 2019 01 29; 26(5):1157-1173.e5. Pai EL, Vogt D, Clemente-Perez A, McKinsey GL, Cho FS, Hu JS, Wimer M, Paul A, Fazel Darbandi S, Pla R, Nowakowski TJ, Goodrich LV, Paz JT, Rubenstein JLR. PMID: 30699346; PMCID: PMC6602795.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    33. Genome-wide de novo risk score implicates promoter variation in autism spectrum disorder. Science. 2018 12 14; 362(6420). An JY, Lin K, Zhu L, Werling DM, Dong S, Brand H, Wang HZ, Zhao X, Schwartz GB, Collins RL, Currall BB, Dastmalchi C, Dea J, Duhn C, Gilson MC, Klei L, Liang L, Markenscoff-Papadimitriou E, Pochareddy S, Ahituv N, Buxbaum JD, Coon H, Daly MJ, Kim YS, Marth GT, Neale BM, Quinlan AR, Rubenstein JL, Sestan N, State MW, Willsey AJ, Talkowski ME, Devlin B, Roeder K, Sanders SJ. PMID: 30545852; PMCID: PMC6432922.
      View in: PubMed   Mentions: 83     Fields:    Translation:HumansCells
    34. Mouse Cntnap2 and Human CNTNAP2 ASD Alleles Cell Autonomously Regulate PV+ Cortical Interneurons. Cereb Cortex. 2018 11 01; 28(11):3868-3879. Vogt D, Cho KKA, Shelton SM, Paul A, Huang ZJ, Sohal VS, Rubenstein JLR. PMID: 29028946; PMCID: PMC6455910.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansAnimalsCells
    35. Dlx1 and Dlx2 Promote Interneuron GABA Synthesis, Synaptogenesis, and Dendritogenesis. Cereb Cortex. 2018 11 01; 28(11):3797-3815. Pla R, Stanco A, Howard MA, Rubin AN, Vogt D, Mortimer N, Cobos I, Potter GB, Lindtner S, Price JD, Nord AS, Visel A, Schreiner CE, Baraban SC, Rowitch DH, Rubenstein JLR. PMID: 29028947; PMCID: PMC6188538.
      View in: PubMed   Mentions: 32     Fields:    Translation:AnimalsCells
    36. CTCF Governs the Identity and Migration of MGE-Derived Cortical Interneurons. J Neurosci. 2019 01 02; 39(1):177-192. Elbert A, Vogt D, Watson A, Levy M, Jiang Y, Brûlé E, Rowland ME, Rubenstein J, Bérubé NG. PMID: 30377227; PMCID: PMC6331652.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    37. Neonatal Tbr1 Dosage Controls Cortical Layer 6 Connectivity. Neuron. 2018 11 21; 100(4):831-845.e7. Fazel Darbandi S, Robinson Schwartz SE, Qi Q, Catta-Preta R, Pai EL, Mandell JD, Everitt A, Rubin A, Krasnoff RA, Katzman S, Tastad D, Nord AS, Willsey AJ, Chen B, State MW, Sohal VS, Rubenstein JLR. PMID: 30318412; PMCID: PMC6250594.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    38. Genomic analysis of transcriptional networks directing progression of cell states during MGE development. Neural Dev. 2018 09 14; 13(1):21. Sandberg M, Taher L, Hu J, Black BL, Nord AS, Rubenstein JLR. PMID: 30217225; PMCID: PMC6138899.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    39. Transcription Factors Sp8 and Sp9 Coordinately Regulate Olfactory Bulb Interneuron Development. Cereb Cortex. 2018 09 01; 28(9):3278-3294. Li J, Wang C, Zhang Z, Wen Y, An L, Liang Q, Xu Z, Wei S, Li W, Guo T, Liu G, Tao G, You Y, Du H, Fu Z, He M, Chen B, Campbell K, Alvarez-Buylla A, Rubenstein JL, Yang Z. PMID: 28981617; PMCID: PMC6095218.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    40. The Epigenetic Factor Landscape of Developing Neocortex Is Regulated by Transcription Factors Pax6→ Tbr2→ Tbr1. Front Neurosci. 2018; 12:571. Elsen GE, Bedogni F, Hodge RD, Bammler TK, MacDonald JW, Lindtner S, Rubenstein JLR, Hevner RF. PMID: 30186101; PMCID: PMC6113890.
      View in: PubMed   Mentions: 16  
    41. SP8 and SP9 coordinately promote D2-type medium spiny neuron production by activating Six3 expression. Development. 2018 07 23; 145(14). Xu Z, Liang Q, Song X, Zhang Z, Lindtner S, Li Z, Wen Y, Liu G, Guo T, Qi D, Wang M, Wang C, Li H, You Y, Wang X, Chen B, Feng H, Rubenstein JL, Yang Z. PMID: 29967281; PMCID: PMC6078334.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    42. Secretagogin is Expressed by Developing Neocortical GABAergic Neurons in Humans but not Mice and Increases Neurite Arbor Size and Complexity. Cereb Cortex. 2018 06 01; 28(6):1946-1958. Raju CS, Spatazza J, Stanco A, Larimer P, Sorrells SF, Kelley KW, Nicholas CR, Paredes MF, Lui JH, Hasenstaub AR, Kriegstein AR, Alvarez-Buylla A, Rubenstein JL, Oldham MC. PMID: 28449024; PMCID: PMC6019052.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    43. An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder. Nat Genet. 2018 04 26; 50(5):727-736. Werling DM, Brand H, An JY, Stone MR, Zhu L, Glessner JT, Collins RL, Dong S, Layer RM, Markenscoff-Papadimitriou E, Farrell A, Schwartz GB, Wang HZ, Currall BB, Zhao X, Dea J, Duhn C, Erdman CA, Gilson MC, Yadav R, Handsaker RE, Kashin S, Klei L, Mandell JD, Nowakowski TJ, Liu Y, Pochareddy S, Smith L, Walker MF, Waterman MJ, He X, Kriegstein AR, Rubenstein JL, Sestan N, McCarroll SA, Neale BM, Coon H, Willsey AJ, Buxbaum JD, Daly MJ, State MW, Quinlan AR, Marth GT, Roeder K, Devlin B, Talkowski ME, Sanders SJ. PMID: 29700473; PMCID: PMC5961723.
      View in: PubMed   Mentions: 97     Fields:    Translation:Humans
    44. Tbr1 instructs laminar patterning of retinal ganglion cell dendrites. Nat Neurosci. 2018 05; 21(5):659-670. Liu J, Reggiani JDS, Laboulaye MA, Pandey S, Chen B, Rubenstein JLR, Krishnaswamy A, Sanes JR. PMID: 29632360; PMCID: PMC5920715.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    45. Ultraconserved Enhancers Are Required for Normal Development. Cell. 2018 01 25; 172(3):491-499.e15. Dickel DE, Ypsilanti AR, Pla R, Zhu Y, Barozzi I, Mannion BJ, Khin YS, Fukuda-Yuzawa Y, Plajzer-Frick I, Pickle CS, Lee EA, Harrington AN, Pham QT, Garvin TH, Kato M, Osterwalder M, Akiyama JA, Afzal V, Rubenstein JLR, Pennacchio LA, Visel A. PMID: 29358049; PMCID: PMC5786478.
      View in: PubMed   Mentions: 83     Fields:    Translation:AnimalsCells
    46. Cortical interneuron development: a tale of time and space. Development. 2017 11 01; 144(21):3867-3878. Hu JS, Vogt D, Sandberg M, Rubenstein JL. PMID: 29089360; PMCID: PMC5702067.
      View in: PubMed   Mentions: 65     Fields:    Translation:AnimalsCells
    47. The Cytokine CXCL12 Promotes Basket Interneuron Inhibitory Synapses in the Medial Prefrontal Cortex. Cereb Cortex. 2017 09 01; 27(9):4303-4313. Wu PR, Cho KKA, Vogt D, Sohal VS, Rubenstein JLR. PMID: 27497284; PMCID: PMC6410508.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
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    112. Intrinsically determined cell death of developing cortical interneurons. Nature. 2012 Nov 01; 491(7422):109-13. Southwell DG, Paredes MF, Galvao RP, Jones DL, Froemke RC, Sebe JY, Alfaro-Cervello C, Tang Y, Garcia-Verdugo JM, Rubenstein JL, Baraban SC, Alvarez-Buylla A. PMID: 23041929; PMCID: PMC3726009.
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    113. Cleft palate defect of Dlx1/2-/- mutant mice is caused by lack of vertical outgrowth in the posterior palate. Dev Dyn. 2012 Nov; 241(11):1757-69. Jeong J, Cesario J, Zhao Y, Burns L, Westphal H, Rubenstein JL. PMID: 22972697; PMCID: PMC3988582.
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    114. Conditional ablation of brain-derived neurotrophic factor-TrkB signaling impairs striatal neuron development. Proc Natl Acad Sci U S A. 2012 Sep 18; 109(38):15491-6. Li Y, Yui D, Luikart BW, McKay RM, Li Y, Rubenstein JL, Parada LF. PMID: 22949667; PMCID: PMC3458400.
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    115. Subcortical visual shell nuclei targeted by ipRGCs develop from a Sox14+-GABAergic progenitor and require Sox14 to regulate daily activity rhythms. Neuron. 2012 Aug 23; 75(4):648-62. Delogu A, Sellers K, Zagoraiou L, Bocianowska-Zbrog A, Mandal S, Guimera J, Rubenstein JL, Sugden D, Jessell T, Lumsden A. PMID: 22920256.
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    116. Autistic-like behaviour in Scn1a+/- mice and rescue by enhanced GABA-mediated neurotransmission. Nature. 2012 Sep 20; 489(7416):385-90. Han S, Tai C, Westenbroek RE, Yu FH, Cheah CS, Potter GB, Rubenstein JL, Scheuer T, de la Iglesia HO, Catterall WA. PMID: 22914087; PMCID: PMC3448848.
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    117. Specific deletion of NaV1.1 sodium channels in inhibitory interneurons causes seizures and premature death in a mouse model of Dravet syndrome. Proc Natl Acad Sci U S A. 2012 Sep 04; 109(36):14646-51. Cheah CS, Yu FH, Westenbroek RE, Kalume FK, Oakley JC, Potter GB, Rubenstein JL, Catterall WA. PMID: 22908258; PMCID: PMC3437823.
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    118. Hilar GABAergic interneuron activity controls spatial learning and memory retrieval. PLoS One. 2012; 7(7):e40555. Andrews-Zwilling Y, Gillespie AK, Kravitz AV, Nelson AB, Devidze N, Lo I, Yoon SY, Bien-Ly N, Ring K, Zwilling D, Potter GB, Rubenstein JL, Kreitzer AC, Huang Y. PMID: 22792368; PMCID: PMC3390383.
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    119. Chronic reduction in inhibition reduces receptive field size in mouse auditory cortex. Proc Natl Acad Sci U S A. 2012 Aug 21; 109(34):13829-34. Seybold BA, Stanco A, Cho KK, Potter GB, Kim C, Sohal VS, Rubenstein JL, Schreiner CE. PMID: 22753490; PMCID: PMC3427089.
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    120. Forebrain GABAergic neuron precursors integrate into adult spinal cord and reduce injury-induced neuropathic pain. Neuron. 2012 May 24; 74(4):663-75. Bráz JM, Sharif-Naeini R, Vogt D, Kriegstein A, Alvarez-Buylla A, Rubenstein JL, Basbaum AI. PMID: 22632725; PMCID: PMC3361692.
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    121. COUP-TFII controls amygdala patterning by regulating neuropilin expression. Development. 2012 May; 139(9):1630-9. Tang K, Rubenstein JL, Tsai SY, Tsai MJ. PMID: 22492355; PMCID: PMC3317968.
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    122. TrkA gene ablation in basal forebrain results in dysfunction of the cholinergic circuitry. J Neurosci. 2012 Mar 21; 32(12):4065-79. Sanchez-Ortiz E, Yui D, Song D, Li Y, Rubenstein JL, Reichardt LF, Parada LF. PMID: 22442072; PMCID: PMC3403817.
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    123. Helios transcription factor expression depends on Gsx2 and Dlx1&2 function in developing striatal matrix neurons. Stem Cells Dev. 2012 Aug 10; 21(12):2239-51. Martín-Ibáñez R, Crespo E, Esgleas M, Urban N, Wang B, Waclaw R, Georgopoulos K, Martínez S, Campbell K, Vicario-Abejón C, Alberch J, Chan S, Kastner P, Rubenstein JL, Canals JM. PMID: 22142223; PMCID: PMC3411368.
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    124. A subpopulation of dorsal lateral/caudal ganglionic eminence-derived neocortical interneurons expresses the transcription factor Sp8. Cereb Cortex. 2012 Sep; 22(9):2120-30. Ma T, Zhang Q, Cai Y, You Y, Rubenstein JL, Yang Z. PMID: 22021915.
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    125. Dlx6 regulates molecular properties of the striatum and central nucleus of the amygdala. J Comp Neurol. 2011 Aug 15; 519(12):2320-34. Wang B, Lufkin T, Rubenstein JL. PMID: 21452241; PMCID: PMC4019376.
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    126. Influence of a subtype of inhibitory interneuron on stimulus-specific responses in visual cortex. Cereb Cortex. 2012 Mar; 22(3):493-508. Mao R, Schummers J, Knoblich U, Lacey CJ, Van Wart A, Cobos I, Kim C, Huguenard JR, Rubenstein JL, Sur M. PMID: 21666125; PMCID: PMC3278313.
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    127. Lhx6 and Lhx8 coordinately induce neuronal expression of Shh that controls the generation of interneuron progenitors. Neuron. 2011 Jun 09; 70(5):939-50. Flandin P, Zhao Y, Vogt D, Jeong J, Long J, Potter G, Westphal H, Rubenstein JL. PMID: 21658586; PMCID: PMC3153409.
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    128. Deriving excitatory neurons of the neocortex from pluripotent stem cells. Neuron. 2011 May 26; 70(4):645-60. Hansen DV, Rubenstein JL, Kriegstein AR. PMID: 21609822; PMCID: PMC3124445.
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    129. No paradox, no progress: inverse cancer comorbidity in people with other complex diseases. Lancet Oncol. 2011 Jun; 12(6):604-8. Tabarés-Seisdedos R, Dumont N, Baudot A, Valderas JM, Climent J, Valencia A, Crespo-Facorro B, Vieta E, Gómez-Beneyto M, Martínez S, Rubenstein JL. PMID: 21498115.
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    130. Deletion of Dlx1 results in reduced glutamatergic input to hippocampal interneurons. J Neurophysiol. 2011 May; 105(5):1984-91. Jones DL, Howard MA, Stanco A, Rubenstein JL, Baraban SC. PMID: 21325686; PMCID: PMC3094166.
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    131. Subregional specification of embryonic stem cell-derived ventral telencephalic tissues by timed and combinatory treatment with extrinsic signals. J Neurosci. 2011 Feb 02; 31(5):1919-33. Danjo T, Eiraku M, Muguruma K, Watanabe K, Kawada M, Yanagawa Y, Rubenstein JL, Sasai Y. PMID: 21289201; PMCID: PMC6623725.
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    132. CXCR4 and CXCR7 have distinct functions in regulating interneuron migration. Neuron. 2011 Jan 13; 69(1):61-76. Wang Y, Li G, Stanco A, Long JE, Crawford D, Potter GB, Pleasure SJ, Behrens T, Rubenstein JL. PMID: 21220099; PMCID: PMC3025760.
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    133. Identification of direct downstream targets of Dlx5 during early inner ear development. Hum Mol Genet. 2011 Apr 01; 20(7):1262-73. Sajan SA, Rubenstein JL, Warchol ME, Lovett M. PMID: 21227998; PMCID: PMC3049351.
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    134. Tbr1 and Fezf2 regulate alternate corticofugal neuronal identities during neocortical development. J Neurosci. 2011 Jan 12; 31(2):549-64. McKenna WL, Betancourt J, Larkin KA, Abrams B, Guo C, Rubenstein JL, Chen B. PMID: 21228164; PMCID: PMC3276402.
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    135. A homeodomain feedback circuit underlies step-function interpretation of a Shh morphogen gradient during ventral neural patterning. Development. 2010 Dec; 137(23):4051-60. Lek M, Dias JM, Marklund U, Uhde CW, Kurdija S, Lei Q, Sussel L, Rubenstein JL, Matise MP, Arnold HH, Jessell TM, Ericson J. PMID: 21062862.
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    136. Dysfunction in GABA signalling mediates autism-like stereotypies and Rett syndrome phenotypes. Nature. 2010 Nov 11; 468(7321):263-9. Chao HT, Chen H, Samaco RC, Xue M, Chahrour M, Yoo J, Neul JL, Gong S, Lu HC, Heintz N, Ekker M, Rubenstein JL, Noebels JL, Rosenmund C, Zoghbi HY. PMID: 21068835; PMCID: PMC3057962.
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    137. Annual Research Review: Development of the cerebral cortex: implications for neurodevelopmental disorders. J Child Psychol Psychiatry. 2011 Apr; 52(4):339-55. Rubenstein JL. PMID: 20735793; PMCID: PMC3429600.
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    138. An SNP in an ultraconserved regulatory element affects Dlx5/Dlx6 regulation in the forebrain. Development. 2010 Sep; 137(18):3089-97. Poitras L, Yu M, Lesage-Pelletier C, Macdonald RB, Gagné JP, Hatch G, Kelly I, Hamilton SP, Rubenstein JL, Poirier GG, Ekker M. PMID: 20702565; PMCID: PMC3188590.
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    139. New neurons clear the path of astrocytic processes for their rapid migration in the adult brain. Neuron. 2010 Jul 29; 67(2):213-23. Kaneko N, Marín O, Koike M, Hirota Y, Uchiyama Y, Wu JY, Lu Q, Tessier-Lavigne M, Alvarez-Buylla A, Okano H, Rubenstein JL, Sawamoto K. PMID: 20670830; PMCID: PMC4080818.
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    140. Tbr1 regulates regional and laminar identity of postmitotic neurons in developing neocortex. Proc Natl Acad Sci U S A. 2010 Jul 20; 107(29):13129-34. Bedogni F, Hodge RD, Elsen GE, Nelson BR, Daza RA, Beyer RP, Bammler TK, Rubenstein JL, Hevner RF. PMID: 20615956; PMCID: PMC2919950.
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    142. Three hypotheses for developmental defects that may underlie some forms of autism spectrum disorder. Curr Opin Neurol. 2010 Apr; 23(2):118-23. Rubenstein JL. PMID: 20087182.
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    143. Comparative mouse brain tractography of diffusion magnetic resonance imaging. Neuroimage. 2010 Jul 01; 51(3):1027-36. Moldrich RX, Pannek K, Hoch R, Rubenstein JL, Kurniawan ND, Richards LJ. PMID: 20303410; PMCID: PMC2882245.
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    144. Repression of Fgf signaling by sprouty1-2 regulates cortical patterning in two distinct regions and times. J Neurosci. 2010 Mar 17; 30(11):4015-23. Faedo A, Borello U, Rubenstein JL. PMID: 20237272; PMCID: PMC2852648.
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    145. Erratum to: Role for TGF-β superfamily signaling in telencephalic GABAergic neuron development. J Neurodev Disord. 2010 Mar; 2(1):47. Maira M, Long JE, Lee AY, Rubenstein JL, Stifani S. PMID: 22127839; PMCID: PMC3164029.
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    146. The progenitor zone of the ventral medial ganglionic eminence requires Nkx2-1 to generate most of the globus pallidus but few neocortical interneurons. J Neurosci. 2010 Feb 24; 30(8):2812-23. Flandin P, Kimura S, Rubenstein JL. PMID: 20181579; PMCID: PMC2865856.
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    147. Ikaros-1 couples cell cycle arrest of late striatal precursors with neurogenesis of enkephalinergic neurons. J Comp Neurol. 2010 Feb 01; 518(3):329-51. Martín-Ibáñez R, Crespo E, Urbán N, Sergent-Tanguy S, Herranz C, Jaumot M, Valiente M, Long JE, Pineda JR, Andreu C, Rubenstein JL, Marín O, Georgopoulos K, Mengod G, Fariñas I, Bachs O, Alberch J, Canals JM. PMID: 19950118.
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    148. A mutation in the pericentrin gene causes abnormal interneuron migration to the olfactory bulb in mice. Dev Biol. 2010 Apr 01; 340(1):41-53. Endoh-Yamagami S, Karkar KM, May SR, Cobos I, Thwin MT, Long JE, Ashique AM, Zarbalis K, Rubenstein JL, Peterson AS. PMID: 20096683.
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    149. Indirect modulation of Shh signaling by Dlx5 affects the oral-nasal patterning of palate and rescues cleft palate in Msx1-null mice. Development. 2009 Dec; 136(24):4225-33. Han J, Mayo J, Xu X, Li J, Bringas P, Maas RL, Rubenstein JL, Chai Y. PMID: 19934017; PMCID: PMC2781056.
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    152. Reduction of seizures by transplantation of cortical GABAergic interneuron precursors into Kv1.1 mutant mice. Proc Natl Acad Sci U S A. 2009 Sep 08; 106(36):15472-7. Baraban SC, Southwell DG, Estrada RC, Jones DL, Sebe JY, Alfaro-Cervello C, García-Verdugo JM, Rubenstein JL, Alvarez-Buylla A. PMID: 19706400; PMCID: PMC2741275.
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    153. The organization of the transcriptional network in specific neuronal classes. Mol Syst Biol. 2009; 5:291. Winden KD, Oldham MC, Mirnics K, Ebert PJ, Swan CH, Levitt P, Rubenstein JL, Horvath S, Geschwind DH. PMID: 19638972; PMCID: PMC2724976.
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    154. Reduced conditioned fear response in mice that lack Dlx1 and show subtype-specific loss of interneurons. J Neurodev Disord. 2009 Sep; 1(3):224-36. Mao R, Page DT, Merzlyak I, Kim C, Tecott LH, Janak PH, Rubenstein JL, Sur M. PMID: 19816534; PMCID: PMC2758250.
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    155. The level of the transcription factor Pax6 is essential for controlling the balance between neural stem cell self-renewal and neurogenesis. PLoS Genet. 2009 Jun; 5(6):e1000511. Sansom SN, Griffiths DS, Faedo A, Kleinjan DJ, Ruan Y, Smith J, van Heyningen V, Rubenstein JL, Livesey FJ. PMID: 19521500; PMCID: PMC2686252.
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    156. Dlx1&2 and Mash1 transcription factors control MGE and CGE patterning and differentiation through parallel and overlapping pathways. Cereb Cortex. 2009 Jul; 19 Suppl 1:i96-106. Long JE, Cobos I, Potter GB, Rubenstein JL. PMID: 19386638; PMCID: PMC2693539.
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    157. Genes and signaling events that establish regional patterning of the mammalian forebrain. Semin Cell Dev Biol. 2009 Jun; 20(4):378-86. Hoch RV, Rubenstein JL, Pleasure S. PMID: 19560042.
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    160. Autism and brain development. Cell. 2008 Oct 31; 135(3):396-400. Walsh CA, Morrow EM, Rubenstein JL. PMID: 18984148; PMCID: PMC2701104.
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    162. Dlx genes pattern mammalian jaw primordium by regulating both lower jaw-specific and upper jaw-specific genetic programs. Development. 2008 Sep; 135(17):2905-16. Jeong J, Li X, McEvilly RJ, Rosenfeld MG, Lufkin T, Rubenstein JL. PMID: 18697905; PMCID: PMC4913551.
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    163. Distinct molecular pathways for development of telencephalic interneuron subtypes revealed through analysis of Lhx6 mutants. J Comp Neurol. 2008 Sep 01; 510(1):79-99. Zhao Y, Flandin P, Long JE, Cuesta MD, Westphal H, Rubenstein JL. PMID: 18613121; PMCID: PMC2547494.
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    164. Functional disturbances in the striatum by region-specific ablation of NMDA receptors. Proc Natl Acad Sci U S A. 2008 Sep 02; 105(35):12961-6. Ohtsuka N, Tansky MF, Kuang H, Kourrich S, Thomas MJ, Rubenstein JL, Ekker M, Leeman SE, Tsien JZ. PMID: 18728179; PMCID: PMC2529108.
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    165. Characterization of a distinct subpopulation of striatal projection neurons expressing the Dlx genes in the basal ganglia through the activity of the I56ii enhancer. Dev Biol. 2008 Oct 15; 322(2):415-24. Ghanem N, Yu M, Poitras L, Rubenstein JL, Ekker M. PMID: 18706405.
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    166. Distal-less homeobox transcription factors regulate development and maturation of natural killer cells. Proc Natl Acad Sci U S A. 2008 Aug 05; 105(31):10877-82. Sunwoo JB, Kim S, Yang L, Naik T, Higuchi DA, Rubenstein JL, Yokoyama WM. PMID: 18664585; PMCID: PMC2504821.
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    167. FGF15 promotes neurogenesis and opposes FGF8 function during neocortical development. Neural Dev. 2008 Jul 14; 3:17. Borello U, Cobos I, Long JE, McWhirter JR, Murre C, Rubenstein JL. PMID: 18625063; PMCID: PMC2492847.
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    169. Compartment-specific transcription factors orchestrate angiogenesis gradients in the embryonic brain. Nat Neurosci. 2008 Apr; 11(4):429-39. Vasudevan A, Long JE, Crandall JE, Rubenstein JL, Bhide PG. PMID: 18344991; PMCID: PMC2754271.
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    170. Regional distribution of cortical interneurons and development of inhibitory tone are regulated by Cxcl12/Cxcr4 signaling. J Neurosci. 2008 Jan 30; 28(5):1085-98. Li G, Adesnik H, Li J, Long J, Nicoll RA, Rubenstein JL, Pleasure SJ. PMID: 18234887; PMCID: PMC3072297.
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    171. Histogenetic compartments of the mouse centromedial and extended amygdala based on gene expression patterns during development. J Comp Neurol. 2008 Jan 01; 506(1):46-74. García-López M, Abellán A, Legaz I, Rubenstein JL, Puelles L, Medina L. PMID: 17990271; PMCID: PMC4916653.
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    173. Conserved pattern of OTP-positive cells in the paraventricular nucleus and other hypothalamic sites of tetrapods. Brain Res Bull. 2008 Mar 18; 75(2-4):231-5. Bardet SM, Martinez-de-la-Torre M, Northcutt RG, Rubenstein JL, Puelles L. PMID: 18331876.
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    174. Abnormal social behaviors in mice lacking Fgf17. Genes Brain Behav. 2008 Apr; 7(3):344-54. Scearce-Levie K, Roberson ED, Gerstein H, Cholfin JA, Mandiyan VS, Shah NM, Rubenstein JL, Mucke L. PMID: 17908176.
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    175. Delineation of multiple subpallial progenitor domains by the combinatorial expression of transcriptional codes. J Neurosci. 2007 Sep 05; 27(36):9682-95. Flames N, Pla R, Gelman DM, Rubenstein JL, Puelles L, Marín O. PMID: 17804629; PMCID: PMC4916652.
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    176. Dlx1 and Dlx2 control neuronal versus oligodendroglial cell fate acquisition in the developing forebrain. Neuron. 2007 Aug 02; 55(3):417-33. Petryniak MA, Potter GB, Rowitch DH, Rubenstein JL. PMID: 17678855; PMCID: PMC2039927.
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    177. A subpopulation of olfactory bulb GABAergic interneurons is derived from Emx1- and Dlx5/6-expressing progenitors. J Neurosci. 2007 Jun 27; 27(26):6878-91. Kohwi M, Petryniak MA, Long JE, Ekker M, Obata K, Yanagawa Y, Rubenstein JL, Alvarez-Buylla A. PMID: 17596436; PMCID: PMC4917362.
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    179. Distinct cis-regulatory elements from the Dlx1/Dlx2 locus mark different progenitor cell populations in the ganglionic eminences and different subtypes of adult cortical interneurons. J Neurosci. 2007 May 09; 27(19):5012-22. Ghanem N, Yu M, Long J, Hatch G, Rubenstein JL, Ekker M. PMID: 17494687; PMCID: PMC4917363.
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    180. Inactivation of Arx, the murine ortholog of the X-linked lissencephaly with ambiguous genitalia gene, leads to severe disorganization of the ventral telencephalon with impaired neuronal migration and differentiation. J Neurosci. 2007 Apr 25; 27(17):4786-98. Colombo E, Collombat P, Colasante G, Bianchi M, Long J, Mansouri A, Rubenstein JL, Broccoli V. PMID: 17460091; PMCID: PMC4916654.
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    181. Patterning of frontal cortex subdivisions by Fgf17. Proc Natl Acad Sci U S A. 2007 May 01; 104(18):7652-7. Cholfin JA, Rubenstein JL. PMID: 17442747; PMCID: PMC1863435.
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    182. Dlx-dependent and -independent regulation of olfactory bulb interneuron differentiation. J Neurosci. 2007 Mar 21; 27(12):3230-43. Long JE, Garel S, Alvarez-Dolado M, Yoshikawa K, Osumi N, Alvarez-Buylla A, Rubenstein JL. PMID: 17376983; PMCID: PMC4922751.
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    183. Genetic regulation of prefrontal cortex development and function. Novartis Found Symp. 2007; 288:165-73; discussion 173-7, 276-81. Cholfin JA, Rubenstein JL. PMID: 18494258.
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    184. The NMR structure of the gpU tail-terminator protein from bacteriophage lambda: identification of sites contributing to Mg(II)-mediated oligomerization and biological function. J Mol Biol. 2007 Jan 05; 365(1):175-86. Edmonds L, Liu A, Kwan JJ, Avanessy A, Caracoglia M, Yang I, Maxwell KL, Rubenstein J, Davidson AR, Donaldson LW. PMID: 17056065.
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    185. Neuronal production and precursor proliferation defects in the neocortex of mice with loss of function in the canonical Wnt signaling pathway. Neuroscience. 2006 Nov 03; 142(4):1119-31. Zhou CJ, Borello U, Rubenstein JL, Pleasure SJ. PMID: 16920270.
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    186. The endocannabinoid system controls key epileptogenic circuits in the hippocampus. Neuron. 2006 Aug 17; 51(4):455-66. Monory K, Massa F, Egertová M, Eder M, Blaudzun H, Westenbroek R, Kelsch W, Jacob W, Marsch R, Ekker M, Long J, Rubenstein JL, Goebbels S, Nave KA, During M, Klugmann M, Wölfel B, Dodt HU, Zieglgänsberger W, Wotjak CT, Mackie K, Elphick MR, Marsicano G, Lutz B. PMID: 16908411; PMCID: PMC1769341.
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    187. Cortical inhibition modified by embryonic neural precursors grafted into the postnatal brain. J Neurosci. 2006 Jul 12; 26(28):7380-9. Alvarez-Dolado M, Calcagnotto ME, Karkar KM, Southwell DG, Jones-Davis DM, Estrada RC, Rubenstein JL, Alvarez-Buylla A, Baraban SC. PMID: 16837585; PMCID: PMC1550786.
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    188. Cellular patterns of transcription factor expression in developing cortical interneurons. Cereb Cortex. 2006 Jul; 16 Suppl 1:i82-8. Cobos I, Long JE, Thwin MT, Rubenstein JL. PMID: 16766712.
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    189. Can autism speak to neuroscience? J Neurosci. 2006 Jun 28; 26(26):6893-6. Moldin SO, Rubenstein JL, Hyman SE. PMID: 16807319; PMCID: PMC6673915.
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    190. Dose-dependent functions of Fgf8 in regulating telencephalic patterning centers. Development. 2006 May; 133(9):1831-44. Storm EE, Garel S, Borello U, Hebert JM, Martinez S, McConnell SK, Martin GR, Rubenstein JL. PMID: 16613831.
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    191. Severe hearing loss in Dlxl mutant mice. Hear Res. 2006 Apr; 214(1-2):84-8. Polley DB, Cobos I, Merzenich MM, Rubenstein JL. PMID: 16632068.
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    192. New neurons follow the flow of cerebrospinal fluid in the adult brain. Science. 2006 Feb 03; 311(5761):629-32. Sawamoto K, Wichterle H, Gonzalez-Perez O, Cholfin JA, Yamada M, Spassky N, Murcia NS, Garcia-Verdugo JM, Marin O, Rubenstein JL, Tessier-Lavigne M, Okano H, Alvarez-Buylla A. PMID: 16410488.
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    193. Patterning and plasticity of the cerebral cortex. Science. 2005 Nov 04; 310(5749):805-10. Sur M, Rubenstein JL. PMID: 16272112.
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    194. Analysis of four DLX homeobox genes in autistic probands. BMC Genet. 2005 Nov 02; 6:52. Hamilton SP, Woo JM, Carlson EJ, Ghanem N, Ekker M, Rubenstein JL. PMID: 16266434; PMCID: PMC1310613.
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    195. Reassessing the Dlx code: the genetic regulation of branchial arch skeletal pattern and development. J Anat. 2005 Nov; 207(5):501-61. Depew MJ, Simpson CA, Morasso M, Rubenstein JL. PMID: 16313391; PMCID: PMC1571560.
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    196. Telencephalic embryonic subtractive sequences: a unique collection of neurodevelopmental genes. J Neurosci. 2005 Aug 17; 25(33):7586-600. Bulfone A, Carotenuto P, Faedo A, Aglio V, Garzia L, Bello AM, Basile A, Andrè A, Cocchia M, Guardiola O, Ballabio A, Rubenstein JL, Zollo M. PMID: 16107646; PMCID: PMC6725394.
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    197. Pax6 is required for making specific subpopulations of granule and periglomerular neurons in the olfactory bulb. J Neurosci. 2005 Jul 27; 25(30):6997-7003. Kohwi M, Osumi N, Rubenstein JL, Alvarez-Buylla A. PMID: 16049175; PMCID: PMC6724841.
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    198. Mice lacking Dlx1 show subtype-specific loss of interneurons, reduced inhibition and epilepsy. Nat Neurosci. 2005 Aug; 8(8):1059-68. Cobos I, Calcagnotto ME, Vilaythong AJ, Thwin MT, Noebels JL, Baraban SC, Rubenstein JL. PMID: 16007083.
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    199. The vertebrate ortholog of Aristaless is regulated by Dlx genes in the developing forebrain. J Comp Neurol. 2005 Mar 14; 483(3):292-303. Cobos I, Broccoli V, Rubenstein JL. PMID: 15682394.
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    200. The nuclear receptor COUP-TFI represses differentiation of Cajal-Retzius cells. Brain Res Bull. 2005 Sep 15; 66(4-6):394-401. Studer M, Filosa A, Rubenstein JL. PMID: 16144621.
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    201. Developmental regulation of gonadotropin-releasing hormone gene expression by the MSX and DLX homeodomain protein families. J Biol Chem. 2005 May 13; 280(19):19156-65. Givens ML, Rave-Harel N, Goonewardena VD, Kurotani R, Berdy SE, Swan CH, Rubenstein JL, Robert B, Mellon PL. PMID: 15743757; PMCID: PMC2932481.
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    202. Dlx1 and Dlx2 function is necessary for terminal differentiation and survival of late-born retinal ganglion cells in the developing mouse retina. Development. 2005 Jan; 132(2):311-22. de Melo J, Du G, Fonseca M, Gillespie LA, Turk WJ, Rubenstein JL, Eisenstat DD. PMID: 15604100.
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    203. Identification of Tbr-1/CASK complex target genes in neurons. J Neurochem. 2004 Dec; 91(6):1483-92. Wang TF, Ding CN, Wang GS, Luo SC, Lin YL, Ruan Y, Hevner R, Rubenstein JL, Hsueh YP. PMID: 15584924.
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    204. Identification and characterization of a novel transcript down-regulated in Dlx1/Dlx2 and up-regulated in Pax6 mutant telencephalon. Dev Dyn. 2004 Nov; 231(3):614-20. Faedo A, Quinn JC, Stoney P, Long JE, Dye C, Zollo M, Rubenstein JL, Price DJ, Bulfone A. PMID: 15376329.
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    205. Short- and long-range attraction of cortical GABAergic interneurons by neuregulin-1. Neuron. 2004 Oct 14; 44(2):251-61. Flames N, Long JE, Garratt AN, Fischer TM, Gassmann M, Birchmeier C, Lai C, Rubenstein JL, Marín O. PMID: 15473965.
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    206. Fgf8 regulates the development of intra-neocortical projections. J Neurosci. 2004 Oct 13; 24(41):8917-23. Huffman KJ, Garel S, Rubenstein JL. PMID: 15483110; PMCID: PMC6730060.
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    207. Id4 regulates neural progenitor proliferation and differentiation in vivo. Development. 2004 Nov; 131(21):5441-8. Yun K, Mantani A, Garel S, Rubenstein J, Israel MA. PMID: 15469968.
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    208. Expression of regulatory genes during differentiation of thalamic nuclei in mouse and monkey. J Comp Neurol. 2004 Sep 06; 477(1):55-80. Jones EG, Rubenstein JL. PMID: 15281080.
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    209. Intermediate targets in formation of topographic projections: inputs from the thalamocortical system. Trends Neurosci. 2004 Sep; 27(9):533-9. Garel S, Rubenstein JL. PMID: 15331235.
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    210. A focused and efficient genetic screening strategy in the mouse: identification of mutations that disrupt cortical development. PLoS Biol. 2004 Aug; 2(8):E219. Zarbalis K, May SR, Shen Y, Ekker M, Rubenstein JL, Peterson AS. PMID: 15314648; PMCID: PMC509294.
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    211. Expression of Dbx1, Neurogenin 2, Semaphorin 5A, Cadherin 8, and Emx1 distinguish ventral and lateral pallial histogenetic divisions in the developing mouse claustroamygdaloid complex. J Comp Neurol. 2004 Jul 05; 474(4):504-23. Medina L, Legaz I, González G, De Castro F, Rubenstein JL, Puelles L. PMID: 15174069.
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    212. In vivo characterization of the Nkx2.1 promoter/enhancer elements in transgenic mice. Gene. 2004 Apr 28; 331:73-82. Pan Q, Li C, Xiao J, Kimura S, Rubenstein J, Puelles L, Minoo P. PMID: 15094193.
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    213. Origins of cortical interneuron subtypes. J Neurosci. 2004 Mar 17; 24(11):2612-22. Xu Q, Cobos I, De La Cruz E, Rubenstein JL, Anderson SA. PMID: 15028753; PMCID: PMC6729522.
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    214. Region-specific and stage-dependent regulation of Olig gene expression and oligodendrogenesis by Nkx6.1 homeodomain transcription factor. Development. 2003 Dec; 130(25):6221-31. Liu R, Cai J, Hu X, Tan M, Qi Y, German M, Rubenstein J, Sander M, Qiu M. PMID: 14602683.
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    215. Graded phenotypic response to partial and complete deficiency of a brain-specific transcript variant of the winged helix transcription factor RFX4. Development. 2003 Oct; 130(19):4539-52. Blackshear PJ, Graves JP, Stumpo DJ, Cobos I, Rubenstein JL, Zeldin DC. PMID: 12925582.
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    216. Model of autism: increased ratio of excitation/inhibition in key neural systems. Genes Brain Behav. 2003 Oct; 2(5):255-67. Rubenstein JL, Merzenich MM. PMID: 14606691; PMCID: PMC6748642.
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    217. Forebrain gene expression domains and the evolving prosomeric model. Trends Neurosci. 2003 Sep; 26(9):469-76. Puelles L, Rubenstein JL. PMID: 12948657.
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    218. The LIM-homeobox gene Lhx8 is required for the development of many cholinergic neurons in the mouse forebrain. Proc Natl Acad Sci U S A. 2003 Jul 22; 100(15):9005-10. Zhao Y, Marín O, Hermesz E, Powell A, Flames N, Palkovits M, Rubenstein JL, Westphal H. PMID: 12855770; PMCID: PMC166428.
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    219. Patterning of the lateral ganglionic eminence by the Gsh1 and Gsh2 homeobox genes regulates striatal and olfactory bulb histogenesis and the growth of axons through the basal ganglia. J Comp Neurol. 2003 Jun 23; 461(2):151-65. Yun K, Garel S, Fischman S, Rubenstein JL. PMID: 12724834.
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    220. Dlx transcription factors regulate differentiation of dopaminergic neurons of the ventral thalamus. Mol Cell Neurosci. 2003 May; 23(1):107-20. Andrews GL, Yun K, Rubenstein JL, Mastick GS. PMID: 12799141.
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    221. Directional guidance of interneuron migration to the cerebral cortex relies on subcortical Slit1/2-independent repulsion and cortical attraction. Development. 2003 May; 130(9):1889-901. Marín O, Plump AS, Flames N, Sánchez-Camacho C, Tessier-Lavigne M, Rubenstein JL. PMID: 12642493.
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    222. Molecular regionalization of the neocortex is disrupted in Fgf8 hypomorphic mutants. Development. 2003 May; 130(9):1903-14. Garel S, Huffman KJ, Rubenstein JL. PMID: 12642494.
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    223. Regulatory roles of conserved intergenic domains in vertebrate Dlx bigene clusters. Genome Res. 2003 Apr; 13(4):533-43. Ghanem N, Jarinova O, Amores A, Long Q, Hatch G, Park BK, Rubenstein JL, Ekker M. PMID: 12670995; PMCID: PMC430168.
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    224. Emx1 and Emx2 cooperate to regulate cortical size, lamination, neuronal differentiation, development of cortical efferents, and thalamocortical pathfinding. J Comp Neurol. 2003 Mar 17; 457(4):345-60. Bishop KM, Garel S, Nakagawa Y, Rubenstein JL, O'Leary DD. PMID: 12561075.
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    225. Beyond laminar fate: toward a molecular classification of cortical projection/pyramidal neurons. Dev Neurosci. 2003 Mar-Aug; 25(2-4):139-51. Hevner RF, Daza RA, Rubenstein JL, Stunnenberg H, Olavarria JF, Englund C. PMID: 12966212.
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    226. Cell migration in the forebrain. Annu Rev Neurosci. 2003; 26:441-83. Marín O, Rubenstein JL. PMID: 12626695.
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    227. Dosage of Fgf8 determines whether cell survival is positively or negatively regulated in the developing forebrain. Proc Natl Acad Sci U S A. 2003 Feb 18; 100(4):1757-62. Storm EE, Rubenstein JL, Martin GR. PMID: 12574514; PMCID: PMC149906.
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    228. DLX5 regulates development of peripheral and central components of the olfactory system. J Neurosci. 2003 Jan 15; 23(2):568-78. Long JE, Garel S, Depew MJ, Tobet S, Rubenstein JL. PMID: 12533617; PMCID: PMC6741869.
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    229. The early topography of thalamocortical projections is shifted in Ebf1 and Dlx1/2 mutant mice. Development. 2002 Dec; 129(24):5621-34. Garel S, Yun K, Grosschedl R, Rubenstein JL. PMID: 12421703.
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    230. Modulation of the notch signaling by Mash1 and Dlx1/2 regulates sequential specification and differentiation of progenitor cell types in the subcortical telencephalon. Development. 2002 Nov; 129(21):5029-40. Yun K, Fischman S, Johnson J, Hrabe de Angelis M, Weinmaster G, Rubenstein JL. PMID: 12397111.
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    231. Developmental functions of the Distal-less/Dlx homeobox genes. Development. 2002 Oct; 129(19):4371-86. Panganiban G, Rubenstein JL. PMID: 12223397.
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    232. Distinct actions of Emx1, Emx2, and Pax6 in regulating the specification of areas in the developing neocortex. J Neurosci. 2002 Sep 01; 22(17):7627-38. Bishop KM, Rubenstein JL, O'Leary DD. PMID: 12196586; PMCID: PMC6757966.
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    233. Specification of jaw subdivisions by Dlx genes. Science. 2002 Oct 11; 298(5592):381-5. Depew MJ, Lufkin T, Rubenstein JL. PMID: 12193642.
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    234. Cortical excitatory neurons and glia, but not GABAergic neurons, are produced in the Emx1-expressing lineage. J Neurosci. 2002 Aug 01; 22(15):6309-14. Gorski JA, Talley T, Qiu M, Puelles L, Rubenstein JL, Jones KR. PMID: 12151506; PMCID: PMC6758181.
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    235. Developmental expression of the T-box transcription factor T-bet/Tbx21 during mouse embryogenesis. Mech Dev. 2002 Aug; 116(1-2):157-60. Faedo A, Ficara F, Ghiani M, Aiuti A, Rubenstein JL, Bulfone A. PMID: 12128215.
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    236. Distinct origins of neocortical projection neurons and interneurons in vivo. Cereb Cortex. 2002 Jul; 12(7):702-9. Anderson SA, Kaznowski CE, Horn C, Rubenstein JL, McConnell SK. PMID: 12050082.
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    237. Cortical and thalamic axon pathfinding defects in Tbr1, Gbx2, and Pax6 mutant mice: evidence that cortical and thalamic axons interact and guide each other. J Comp Neurol. 2002 May 20; 447(1):8-17. Hevner RF, Miyashita-Lin E, Rubenstein JL. PMID: 11967891.
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    238. Patterning of the basal telencephalon and hypothalamus is essential for guidance of cortical projections. Development. 2002 Feb; 129(3):761-73. Marín O, Baker J, Puelles L, Rubenstein JL. PMID: 11830575.
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    239. Slit proteins prevent midline crossing and determine the dorsoventral position of major axonal pathways in the mammalian forebrain. Neuron. 2002 Jan 17; 33(2):233-48. Bagri A, Marín O, Plump AS, Mak J, Pleasure SJ, Rubenstein JL, Tessier-Lavigne M. PMID: 11804571.
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    240. Ectopic expression of the Dlx genes induces glutamic acid decarboxylase and Dlx expression. Development. 2002 Jan; 129(1):245-52. Stühmer T, Anderson SA, Ekker M, Rubenstein JL. PMID: 11782417.
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    241. Coordinate regulation and synergistic actions of BMP4, SHH and FGF8 in the rostral prosencephalon regulate morphogenesis of the telencephalic and optic vesicles. Neuroscience. 2002; 111(1):1-17. Ohkubo Y, Chiang C, Rubenstein JL. PMID: 11955708.
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    242. Expression from a Dlx gene enhancer marks adult mouse cortical GABAergic neurons. Cereb Cortex. 2002 Jan; 12(1):75-85. Stühmer T, Puelles L, Ekker M, Rubenstein JL. PMID: 11734534.
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    243. Expression patterns of Wnt8b and Wnt7b in the chicken embryonic brain suggest a correlation with forebrain patterning centers and morphogenesis. Neuroscience. 2002; 113(3):689-98. Garda AL, Puelles L, Rubenstein JL, Medina L. PMID: 12150789.
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    244. Fate map of the avian anterior forebrain at the four-somite stage, based on the analysis of quail-chick chimeras. Dev Biol. 2001 Nov 01; 239(1):46-67. Cobos I, Shimamura K, Rubenstein JL, Martínez S, Puelles L. PMID: 11784018.
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    245. A long, remarkable journey: tangential migration in the telencephalon. Nat Rev Neurosci. 2001 Nov; 2(11):780-90. Marín O, Rubenstein JL. PMID: 11715055.
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    246. Evidence that GRIP, a PDZ-domain protein which is expressed in the embryonic forebrain, co-activates transcription with DLX homeodomain proteins. Brain Res Dev Brain Res. 2001 Oct 24; 130(2):217-30. Yu G, Zerucha T, Ekker M, Rubenstein JL. PMID: 11675124.
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    247. Requirement for Pbx1 in skeletal patterning and programming chondrocyte proliferation and differentiation. Development. 2001 Sep; 128(18):3543-57. Selleri L, Depew MJ, Jacobs Y, Chanda SK, Tsang KY, Cheah KS, Rubenstein JL, O'Gorman S, Cleary ML. PMID: 11566859.
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    248. The CRE/CREB pathway is transiently expressed in thalamic circuit development and contributes to refinement of retinogeniculate axons. Neuron. 2001 Aug 16; 31(3):409-20. Pham TA, Rubenstein JL, Silva AJ, Storm DR, Stryker MP. PMID: 11516398.
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    249. Sorting of striatal and cortical interneurons regulated by semaphorin-neuropilin interactions. Science. 2001 Aug 03; 293(5531):872-5. Marín O, Yaron A, Bagri A, Tessier-Lavigne M, Rubenstein JL, Rubenstein JL. PMID: 11486090.
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    250. Control of oligodendrocyte differentiation by the Nkx2.2 homeodomain transcription factor. Development. 2001 Jul; 128(14):2723-33. Qi Y, Cai J, Wu Y, Wu R, Lee J, Fu H, Rao M, Sussel L, Rubenstein J, Qiu M. PMID: 11526078.
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    251. Local retinoid signaling coordinates forebrain and facial morphogenesis by maintaining FGF8 and SHH. Development. 2001 Jul; 128(14):2755-67. Schneider RA, Hu D, Rubenstein JL, Maden M, Helms JA. PMID: 11526081.
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    252. Bone morphogenetic protein-2 (BMP-2) signaling to the Col2alpha1 gene in chondroblasts requires the homeobox gene Dlx-2. DNA Cell Biol. 2001 Jun; 20(6):359-65. Xu SC, Harris MA, Rubenstein JL, Mundy GR, Harris SE. PMID: 11445007.
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    253. Chicken Nkx6.1 expression at advanced stages of development identifies distinct brain nuclei derived from the basal plate. Mech Dev. 2001 Apr; 102(1-2):279-82. Puelles E, Rubenstein JL, Puelles L. PMID: 11287211.
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    254. Pax-6 regulates expression of SFRP-2 and Wnt-7b in the developing CNS. J Neurosci. 2001 Mar 01; 21(5):RC132. Kim AS, Anderson SA, Rubenstein JL, Lowenstein DH, Pleasure SJ. PMID: 11222670; PMCID: PMC6762962.
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    255. Tbr1 regulates differentiation of the preplate and layer 6. Neuron. 2001 Feb; 29(2):353-66. Hevner RF, Shi L, Justice N, Hsueh Y, Sheng M, Smiga S, Bulfone A, Goffinet AM, Campagnoni AT, Rubenstein JL, Rubenstein JL. PMID: 11239428.
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    256. Distinct cortical migrations from the medial and lateral ganglionic eminences. Development. 2001 Feb; 128(3):353-63. Anderson SA, Marín O, Horn C, Jennings K, Rubenstein JL. PMID: 11152634.
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    257. Coordinate expression of Fgf8, Otx2, Bmp4, and Shh in the rostral prosencephalon during development of the telencephalic and optic vesicles. Neuroscience. 2001; 108(2):183-206. Crossley PH, Martinez S, Ohkubo Y, Rubenstein JL. PMID: 11734354.
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    258. Gsh2 and Pax6 play complementary roles in dorsoventral patterning of the mammalian telencephalon. Development. 2001 Jan; 128(2):193-205. Yun K, Potter S, Rubenstein JL. PMID: 11124115.
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    259. Induction and dorsoventral patterning of the telencephalon. Neuron. 2000 Dec; 28(3):641-51. Wilson SW, Rubenstein JL. PMID: 11163256.
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    260. Cell migration from the ganglionic eminences is required for the development of hippocampal GABAergic interneurons. Neuron. 2000 Dec; 28(3):727-40. Pleasure SJ, Anderson S, Hevner R, Bagri A, Marin O, Lowenstein DH, Rubenstein JL, Rubenstein JL. PMID: 11163262.
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    261. Ventral neural patterning by Nkx homeobox genes: Nkx6.1 controls somatic motor neuron and ventral interneuron fates. Genes Dev. 2000 Sep 01; 14(17):2134-9. Sander M, Paydar S, Ericson J, Briscoe J, Berber E, German M, Jessell TM, Rubenstein JL. PMID: 10970877; PMCID: PMC316892.
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    262. Pallial and subpallial derivatives in the embryonic chick and mouse telencephalon, traced by the expression of the genes Dlx-2, Emx-1, Nkx-2.1, Pax-6, and Tbr-1. J Comp Neurol. 2000 Aug 28; 424(3):409-38. Puelles L, Kuwana E, Puelles E, Bulfone A, Shimamura K, Keleher J, Smiga S, Rubenstein JL. PMID: 10906711.
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    263. Origin and molecular specification of striatal interneurons. J Neurosci. 2000 Aug 15; 20(16):6063-76. Marin O, Anderson SA, Rubenstein JL. PMID: 10934256; PMCID: PMC6772576.
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    264. Hippocampus development and generation of dentate gyrus granule cells is regulated by LEF1. Development. 2000 Feb; 127(3):469-82. Galceran J, Miyashita-Lin EM, Devaney E, Rubenstein JL, Rubenstein JL, Grosschedl R. PMID: 10631168.
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    265. A highly conserved enhancer in the Dlx5/Dlx6 intergenic region is the site of cross-regulatory interactions between Dlx genes in the embryonic forebrain. J Neurosci. 2000 Jan 15; 20(2):709-21. Zerucha T, Stühmer T, Hatch G, Park BK, Long Q, Yu G, Gambarotta A, Schultz JR, Rubenstein JL, Ekker M. PMID: 10632600; PMCID: PMC6772408.
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    266. The contribution of the ganglionic eminence to the neuronal cell types of the cerebral cortex. Novartis Found Symp. 2000; 228:129-39; discussion 139-47. Parnavelas JG, Anderson SA, Lavdas AA, Grigoriou M, Pachnis V, Rubenstein JL. PMID: 10929320.
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    267. Independent regulation of Dlx2 expression in the epithelium and mesenchyme of the first branchial arch. Development. 2000 Jan; 127(2):217-24. Thomas BL, Liu JK, Rubenstein JL, Sharpe PT. PMID: 10603340.
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    268. Intrinsic and extrinsic control of cortical development. Novartis Found Symp. 2000; 228:67-75; discussion 75-82, 109-13. Rubenstein JL. PMID: 10929317.
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    269. Cre-mediated gene inactivation demonstrates that FGF8 is required for cell survival and patterning of the first branchial arch. Genes Dev. 1999 Dec 01; 13(23):3136-48. Trumpp A, Depew MJ, Rubenstein JL, Bishop JM, Martin GR. PMID: 10601039; PMCID: PMC317178.
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    270. DLX-1, DLX-2, and DLX-5 expression define distinct stages of basal forebrain differentiation. J Comp Neurol. 1999 Nov 15; 414(2):217-37. Eisenstat DD, Liu JK, Mione M, Zhong W, Yu G, Anderson SA, Ghattas I, Puelles L, Rubenstein JL. PMID: 10516593.
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    271. Differential origins of neocortical projection and local circuit neurons: role of Dlx genes in neocortical interneuronogenesis. Cereb Cortex. 1999 Sep; 9(6):646-54. Anderson S, Mione M, Yun K, Rubenstein JL. PMID: 10498283.
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    272. Dlx5 regulates regional development of the branchial arches and sensory capsules. Development. 1999 Sep; 126(17):3831-46. Depew MJ, Liu JK, Long JE, Presley R, Meneses JJ, Pedersen RA, Rubenstein JL. PMID: 10433912.
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    273. Genetic control of cortical regionalization and connectivity. Cereb Cortex. 1999 Sep; 9(6):524-32. Rubenstein JL, Anderson S, Shi L, Miyashita-Lin E, Bulfone A, Hevner R. PMID: 10498270.
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    274. Genetic control of cortical development. Cereb Cortex. 1999 Sep; 9(6):521-3. Rubenstein JL, Rakic P. PMID: 10498269.
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    275. Early neocortical regionalization in the absence of thalamic innervation. Science. 1999 Aug 06; 285(5429):906-9. Miyashita-Lin EM, Hevner R, Wassarman KM, Martinez S, Rubenstein JL. PMID: 10436162.
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    276. Loss of Nkx2.1 homeobox gene function results in a ventral to dorsal molecular respecification within the basal telencephalon: evidence for a transformation of the pallidum into the striatum. Development. 1999 Aug; 126(15):3359-70. Sussel L, Marin O, Kimura S, Rubenstein JL. PMID: 10393115.
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    277. Expression pattern of the Tbr2 (Eomesodermin) gene during mouse and chick brain development. Mech Dev. 1999 Jun; 84(1-2):133-8. Bulfone A, Martinez S, Marigo V, Campanella M, Basile A, Quaderi N, Gattuso C, Rubenstein JL, Ballabio A. PMID: 10473127.
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    278. Homeobox gene Nkx2.2 and specification of neuronal identity by graded Sonic hedgehog signalling. Nature. 1999 Apr 15; 398(6728):622-7. Briscoe J, Sussel L, Serup P, Hartigan-O'Connor D, Jessell TM, Rubenstein JL, Ericson J. PMID: 10217145.
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    279. Comparison of the mammalian and avian telencephalon from the perspective of gene expression data. Eur J Morphol. 1999 Apr; 37(2-3):139-50. Puelles L, Kuwana E, Puelles E, Rubenstein JL. PMID: 10342446.
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    280. Cyclic nucleotide-gated cation channel expression in embryonic chick brain. Brain Res Mol Brain Res. 1999 Mar 20; 66(1-2):175-8. Timpe LC, Jin KL, Puelles L, Rubenstein JL. PMID: 10095089.
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    281. Ectopic bone morphogenetic proteins 5 and 4 in the chicken forebrain lead to cyclopia and holoprosencephaly. Proc Natl Acad Sci U S A. 1999 Mar 02; 96(5):2439-44. Golden JA, Bracilovic A, McFadden KA, Beesley JS, Rubenstein JL, Grinspan JB. PMID: 10051661; PMCID: PMC26803.
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    282. FGF8 induces formation of an ectopic isthmic organizer and isthmocerebellar development via a repressive effect on Otx2 expression. Development. 1999 Mar; 126(6):1189-200. Martinez S, Crossley PH, Cobos I, Rubenstein JL, Martin GR. PMID: 10021338.
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    283. Induction of the epibranchial placodes. Development. 1999 Feb; 126(5):895-902. Begbie J, Brunet JF, Rubenstein JL, Graham A. PMID: 9927591.
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    284. Domains of regulatory gene expression and the developing optic chiasm: correspondence with retinal axon paths and candidate signaling cells. J Comp Neurol. 1999 Jan 18; 403(3):346-58. Marcus RC, Shimamura K, Sretavan D, Lai E, Rubenstein JL, Mason CA. PMID: 9886035.
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    285. An olfactory sensory map develops in the absence of normal projection neurons or GABAergic interneurons. Neuron. 1998 Dec; 21(6):1273-82. Bulfone A, Wang F, Hevner R, Anderson S, Cutforth T, Chen S, Meneses J, Pedersen R, Axel R, Rubenstein JL. PMID: 9883721.
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    286. Development of serotonergic neurons and their projections. Biol Psychiatry. 1998 Aug 01; 44(3):145-50. Rubenstein JL. PMID: 9693386.
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    287. Association of MSX1 and TGFB3 with nonsyndromic clefting in humans. Am J Hum Genet. 1998 Aug; 63(2):557-68. Lidral AC, Romitti PA, Basart AM, Doetschman T, Leysens NJ, Daack-Hirsch S, Semina EV, Johnson LR, Machida J, Burds A, Parnell TJ, Rubenstein JL, Murray JC. PMID: 9683588; PMCID: PMC1377298.
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    288. Mice lacking the homeodomain transcription factor Nkx2.2 have diabetes due to arrested differentiation of pancreatic beta cells. Development. 1998 Jun; 125(12):2213-21. Sussel L, Kalamaras J, Hartigan-O'Connor DJ, Meneses JJ, Pedersen RA, Rubenstein JL, Rubenstein JL, German MS. PMID: 9584121.
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    289. FGF and Shh signals control dopaminergic and serotonergic cell fate in the anterior neural plate. Cell. 1998 May 29; 93(5):755-66. Ye W, Shimamura K, Rubenstein JL, Hynes MA, Rosenthal A. PMID: 9630220.
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    290. Development of the cerebral cortex: V. Transcription factors and brain development. J Am Acad Child Adolesc Psychiatry. 1998 May; 37(5):561-2. Rubenstein JL. PMID: 9585660.
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    291. Control of anteroposterior and dorsoventral domains of Nkx-6.1 gene expression relative to other Nkx genes during vertebrate CNS development. Mech Dev. 1998 Mar; 72(1-2):77-88. Qiu M, Shimamura K, Sussel L, Chen S, Rubenstein JL. PMID: 9533954.
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    292. Patterning of the embryonic forebrain. Curr Opin Neurobiol. 1998 Feb; 8(1):18-26. Rubenstein JL, Beachy PA. PMID: 9568388.
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    293. Regionalization of the prosencephalic neural plate. Annu Rev Neurosci. 1998; 21:445-77. Rubenstein JL, Shimamura K, Martinez S, Puelles L. PMID: 9530503.
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    294. Molecular control of odontogenic patterning: positional dependent initiation and morphogenesis. Eur J Oral Sci. 1998 Jan; 106 Suppl 1:44-7. Thomas BL, Tucker AS, Ferguson C, Qiu M, Rubenstein JL, Sharpe PT. PMID: 9541202.
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    295. Role of Dlx-1 and Dlx-2 genes in patterning of the murine dentition. Development. 1997 Dec; 124(23):4811-8. Thomas BL, Tucker AS, Qui M, Ferguson CA, Hardcastle Z, Rubenstein JL, Sharpe PT. PMID: 9428417.
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    296. Dlx genes encode DNA-binding proteins that are expressed in an overlapping and sequential pattern during basal ganglia differentiation. Dev Dyn. 1997 Dec; 210(4):498-512. Liu JK, Ghattas I, Liu S, Chen S, Rubenstein JL. PMID: 9415433.
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    297. Interneuron migration from basal forebrain to neocortex: dependence on Dlx genes. Science. 1997 Oct 17; 278(5337):474-6. Anderson SA, Eisenstat DD, Shi L, Rubenstein JL. PMID: 9334308.
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    298. Specification of the anterior hindbrain and establishment of a normal mid/hindbrain organizer is dependent on Gbx2 gene function. Development. 1997 Aug; 124(15):2923-34. Wassarman KM, Lewandoski M, Campbell K, Joyner AL, Rubenstein JL, Martinez S, Martin GR. PMID: 9247335.
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    299. Mutations of the homeobox genes Dlx-1 and Dlx-2 disrupt the striatal subventricular zone and differentiation of late born striatal neurons. Neuron. 1997 Jul; 19(1):27-37. Anderson SA, Qiu M, Bulfone A, Eisenstat DD, Meneses J, Pedersen R, Rubenstein JL. PMID: 9247261.
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    300. Inductive interactions direct early regionalization of the mouse forebrain. Development. 1997 Jul; 124(14):2709-18. Shimamura K, Rubenstein JL. PMID: 9226442.
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    301. Role of the Dlx homeobox genes in proximodistal patterning of the branchial arches: mutations of Dlx-1, Dlx-2, and Dlx-1 and -2 alter morphogenesis of proximal skeletal and soft tissue structures derived from the first and second arches. Dev Biol. 1997 May 15; 185(2):165-84. Qiu M, Bulfone A, Ghattas I, Meneses JJ, Christensen L, Sharpe PT, Presley R, Pedersen RA, Rubenstein JL. PMID: 9187081.
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    302. ENC-1: a novel mammalian kelch-related gene specifically expressed in the nervous system encodes an actin-binding protein. J Neurosci. 1997 May 01; 17(9):3038-51. Hernandez MC, Andres-Barquin PJ, Martinez S, Bulfone A, Rubenstein JL, Israel MA. PMID: 9096139; PMCID: PMC6573641.
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    303. Dlx-2 homeobox gene controls neuronal differentiation in primary cultures of developing basal ganglia. J Mol Neurosci. 1997 Apr; 8(2):93-113. Ding M, Robel L, James AJ, Eisenstat DD, Leckman JF, Rubenstein JL, Vaccarino FM. PMID: 9188040.
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    304. Workshop on schizophrenia. Proc Natl Acad Sci U S A. 1997 Mar 04; 94(5):1612-4. Barondes SH, Alberts BM, Andreasen NC, Bargmann C, Benes F, Goldman-Rakic P, Gottesman I, Heinemann SF, Jones EG, Kirschner M, Lewis D, Raff M, Roses A, Rubenstein J, Snyder S, Watson SJ, Weinberger DR, Yolken RH. PMID: 9050825; PMCID: PMC34140.
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    305. Patterns of gene expression in the neural plate and neural tube subdivide the embryonic forebrain into transverse and longitudinal domains. Dev Neurosci. 1997; 19(1):88-96. Shimamura K, Martinez S, Puelles L, Rubenstein JL. PMID: 9078438.
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    306. Mutation of the Emx-1 homeobox gene disrupts the corpus callosum. Dev Biol. 1996 Aug 25; 178(1):174-8. Qiu M, Anderson S, Chen S, Meneses JJ, Hevner R, Kuwana E, Pedersen RA, Rubenstein JL. PMID: 8812118.
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    307. Sequence, organization, and transcription of the Dlx-1 and Dlx-2 locus. Genomics. 1996 Aug 01; 35(3):473-85. McGuinness T, Porteus MH, Smiga S, Bulfone A, Kingsley C, Qiu M, Liu JK, Long JE, Xu D, Rubenstein JL. PMID: 8812481.
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    308. The cDNA sequence of murine Nkx-2.2. Gene. 1996 Feb 12; 168(2):271-2. Hartigan DJ, Rubenstein JL. PMID: 8654958.
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    309. Expression patterns of two murine homologs of Drosophila single-minded suggest possible roles in embryonic patterning and in the pathogenesis of Down syndrome. Mol Cell Neurosci. 1996 Jan; 7(1):1-16. Fan CM, Kuwana E, Bulfone A, Fletcher CF, Copeland NG, Jenkins NA, Crews S, Martinez S, Puelles L, Rubenstein JL, Tessier-Lavigne M. PMID: 8812055.
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    310. Longitudinal organization of the anterior neural plate and neural tube. Development. 1995 Dec; 121(12):3923-33. Shimamura K, Hartigan DJ, Martinez S, Puelles L, Rubenstein JL. PMID: 8575293.
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    311. Steroidogenic enzyme P450c17 is expressed in the embryonic central nervous system. Endocrinology. 1995 Nov; 136(11):5212-23. Compagnone NA, Bulfone A, Rubenstein JL, Mellon SH. PMID: 7588260.
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    312. Null mutation of Dlx-2 results in abnormal morphogenesis of proximal first and second branchial arch derivatives and abnormal differentiation in the forebrain. Genes Dev. 1995 Oct 15; 9(20):2523-38. Qiu M, Bulfone A, Martinez S, Meneses JJ, Shimamura K, Pedersen RA, Rubenstein JL. PMID: 7590232.
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    313. T-brain-1: a homolog of Brachyury whose expression defines molecularly distinct domains within the cerebral cortex. Neuron. 1995 Jul; 15(1):63-78. Bulfone A, Smiga SM, Shimamura K, Peterson A, Puelles L, Rubenstein JL. PMID: 7619531.
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    314. Expression of the steroidogenic enzyme P450scc in the central and peripheral nervous systems during rodent embryogenesis. Endocrinology. 1995 Jun; 136(6):2689-96. Compagnone NA, Bulfone A, Rubenstein JL, Mellon SH. PMID: 7750493.
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    315. Id gene expression during development and molecular cloning of the human Id-1 gene. Brain Res Mol Brain Res. 1995 Jun; 30(2):312-26. Zhu W, Dahmen J, Bulfone A, Rigolet M, Hernandez MC, Kuo WL, Puelles L, Rubenstein JL, Israel MA. PMID: 7637581.
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    316. The spatial localization of Dlx-2 during tooth development. Connect Tissue Res. 1995; 32(1-4):27-34. Thomas BL, Porteus MH, Rubenstein JL, Sharpe PT. PMID: 7554927.
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    317. DLX-2, MASH-1, and MAP-2 expression and bromodeoxyuridine incorporation define molecularly distinct cell populations in the embryonic mouse forebrain. J Neurosci. 1994 Nov; 14(11 Pt 1):6370-83. Porteus MH, Bulfone A, Liu JK, Puelles L, Lo LC, Rubenstein JL. PMID: 7965042; PMCID: PMC6577226.
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    318. The embryonic vertebrate forebrain: the prosomeric model. Science. 1994 Oct 28; 266(5185):578-80. Rubenstein JL, Martinez S, Shimamura K, Puelles L. PMID: 7939711.
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    319. Homeobox gene expression during development of the vertebrate brain. Curr Top Dev Biol. 1994; 29:1-63. Rubenstein JL, Puelles L. PMID: 7828435.
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    320. Expression patterns of homeobox and other putative regulatory genes in the embryonic mouse forebrain suggest a neuromeric organization. Trends Neurosci. 1993 Nov; 16(11):472-9. Puelles L, Rubenstein JL. PMID: 7507621.
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    321. Spatially restricted expression of Dlx-1, Dlx-2 (Tes-1), Gbx-2, and Wnt-3 in the embryonic day 12.5 mouse forebrain defines potential transverse and longitudinal segmental boundaries. J Neurosci. 1993 Jul; 13(7):3155-72. Bulfone A, Puelles L, Porteus MH, Frohman MA, Martin GR, Rubenstein JL. PMID: 7687285; PMCID: PMC6576688.
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    322. The mouse Dlx-2 (Tes-1) gene is expressed in spatially restricted domains of the forebrain, face and limbs in midgestation mouse embryos. Mech Dev. 1993 Mar; 40(3):129-40. Bulfone A, Kim HJ, Puelles L, Porteus MH, Grippo JF, Rubenstein JL. PMID: 8098616.
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    323. DLX2 (TES1), a homeobox gene of the Distal-less family, assigned to conserved regions on human and mouse chromosomes 2. Genomics. 1992 Aug; 13(4):1157-61. Ozçelik T, Porteus MH, Rubenstein JL, Francke U. PMID: 1354641.
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    324. A partial cDNA sequence of the Dlx-2 cDNA. Neuron. 1992 Jul; 9(1):187. Porteus MH, Bulfone A, Ciaranello RD, Rubenstein JL. PMID: 1632970.
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    325. Isolation and characterization of a library of cDNA clones that are preferentially expressed in the embryonic telencephalon. Brain Res Mol Brain Res. 1992 Jan; 12(1-3):7-22. Porteus MH, Brice AE, Bulfone A, Usdin TB, Ciaranello RD, Rubenstein JL. PMID: 1372074.
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    326. Isolation and characterization of a novel cDNA clone encoding a homeodomain that is developmentally regulated in the ventral forebrain. Neuron. 1991 Aug; 7(2):221-9. Porteus MH, Bulfone A, Ciaranello RD, Rubenstein JL. PMID: 1678612.
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    327. Subtractive hybridization system using single-stranded phagemids with directional inserts. Nucleic Acids Res. 1990 Aug 25; 18(16):4833-42. Rubenstein JL, Brice AE, Ciaranello RD, Denney D, Porteus MH, Usdin TB. PMID: 2168539; PMCID: PMC331957.
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    328. Use of a recombinant retrovirus to study post-implantation cell lineage in mouse embryos. EMBO J. 1986 Dec 01; 5(12):3133-42. Sanes JR, Rubenstein JL, Nicolas JF. PMID: 3102226; PMCID: PMC1167303.
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    329. Introduction of genes into preimplantation mouse embryos by use of a defective recombinant retrovirus. Proc Natl Acad Sci U S A. 1986 Jan; 83(2):366-8. Rubenstein JL, Nicolas JF, Jacob F. PMID: 3455774; PMCID: PMC322859.
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    330. Introduction of genes into embryonal carcinoma cells and preimplantation embryos by retroviral vectors. Cold Spring Harb Symp Quant Biol. 1985; 50:713-20. Nicolas JF, Rubenstein JL, Bonnerot C, Jacob F. PMID: 3868505.
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    331. Construction of a retrovirus capable of transducing and expressing genes in multipotential embryonic cells. Proc Natl Acad Sci U S A. 1984 Nov; 81(22):7137-40. Rubenstein JL, Nicolas JF, Jacob F. PMID: 6095270; PMCID: PMC392092.
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    332. [Nonsense RNA: a tool for specifically inhibiting the expression of a gene in vivo]. C R Acad Sci III. 1984; 299(8):271-4. Rubenstein JL, Nicolas JF, Jacob F. PMID: 6210135.
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    333. Construction of a synthetic messenger RNA encoding a membrane protein. J Cell Biol. 1983 May; 96(5):1464-9. Rubenstein JL, Chappell TG. PMID: 6341380; PMCID: PMC2112647.
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    334. Purification of coated vesicles by agarose gel electrophoresis. J Cell Biol. 1981 May; 89(2):357-61. Rubenstein JL, Fine RE, Luskey BD, Rothman JE. PMID: 6265464; PMCID: PMC2111692.
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    335. Lateral diffusion of M-13 coat protein in mixtures of phosphatidylcholine and cholesterol. Biochemistry. 1980 Dec 09; 19(25):5907-11. Smith LM, Rubenstein JL, Parce JW, McConnell HM. PMID: 7459346.
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    336. Dynamic properties of binary mixtures of phosphatidylcholines and cholesterol. Biochemistry. 1980 Feb 05; 19(3):569-73. Rubenstein JL, Owicki JC, McConnell HM. PMID: 6243951.
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    337. Lateral diffusion in binary mixtures of cholesterol and phosphatidylcholines. Proc Natl Acad Sci U S A. 1979 Jan; 76(1):15-8. Rubenstein JL, Smith BA, McConnell HM. PMID: 284326; PMCID: PMC382866.
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    338. The mitochondrial DNA of Drosophila melanogaster exists in two distinct and stable superhelical forms. Cell. 1977 Oct; 12(2):471-82. Rubenstein JL, Brutlag D, Clayton DA. PMID: 410503.
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    339. Structure of hepatitis B Dane particle DNA before and after the Dane particle DNA polymerase reaction. J Virol. 1977 Feb; 21(2):666-72. Hruska JF, Clayton DA, Rubenstein JL, Robinson WS. PMID: 833942; PMCID: PMC353869.
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