Felipe Pereira, PhD

Title(s)Specialist, Neurology
SchoolSchool of Medicine
Address675 Nelson Rising Lane, #205
San Francisco CA 94158
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. FTLD targets brain regions expressing recently evolved genes. medRxiv. 2023 Oct 28. Pasquini L, Pereira FL, Seddighi S, Zeng Y, Wei Y, Illán-Gala I, Vatsavayai SC, Friedberg A, Lee AJ, Brown JA, Spina S, Grinberg LT, Sirkis DW, Bonham LW, Yokoyama JS, Boxer AL, Kramer JH, Rosen HJ, Humphrey J, Gitler AD, Miller BL, Pollard KS, Ward ME, Seeley WW. PMID: 37961381; PMCID: PMC10635220.
      View in: PubMed   Mentions: 1  
    2. Synergic Effect of Brachyspira hyodysenteriae and Lawsonia intracellularis Coinfection: Anatomopathological and Microbiome Evaluation. Animals (Basel). 2023 Aug 13; 13(16). Daniel AGS, Pereira CER, Dorella F, Pereira FL, Laub RP, Andrade MR, Barrera-Zarate JA, Gabardo MP, Otoni LVA, Macedo NR, Correia PA, Costa CM, Vasconcellos AO, Wagatsuma MM, Marostica TP, Figueiredo HCP, Guedes RMC. PMID: 37627402; PMCID: PMC10451556.
      View in: PubMed   Mentions: 1  
    3. Correction to: Comparative polyphasic characterization of Weissella strains isolated from beaked whale and rainbow trout (Oncorhynchus mykiss): confirmation of Weissella ceti sp. nov. and description of the novel Weissella tructae sp. nov. isolated from farmed rainbow trout. Braz J Microbiol. 2023 Mar; 54(1):597. Pereira FL, Dorella FA, Castrejón-Nájera J, Reis FYT, Ortega C, Irgang R, Echeverría-Bugueño M, Avendaño-Herrera R, Figueiredo HCP. PMID: 36631641; PMCID: PMC9944685.
      View in: PubMed   Mentions:    Fields:    
    4. Transmission of Escherichia coli Causing Pyometra between Two Female Dogs. Microorganisms. 2022 Dec 14; 10(12). Xavier RGC, Santana CH, da Silva PHS, Aburjaile FF, Pereira FL, Figueiredo HCP, Freitas PMC, Santos RL, Silva ROS. PMID: 36557718.
      View in: PubMed   Mentions: 1  
    5. Comparative polyphasic characterization of Weissella strains isolated from beaked whale and rainbow trout (Oncorhynchus mykiss): confirmation of Weissella ceti sp. nov. and description of the novel Weissella tructae sp. nov. isolated from farmed rainbow trout. Braz J Microbiol. 2022 Dec; 53(4):2263-2272. Pereira FL, Dorella FA, Castrejón-Nájera J, Reis FYT, Ortega C, Irgang R, Echeverría-Bugueño M, Avendaño-Herrera R, Figueiredo HCP. PMID: 36307638; PMCID: PMC9679048.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    6. Rainwater Charitable Foundation criteria for the neuropathologic diagnosis of progressive supranuclear palsy. Acta Neuropathol. 2022 10; 144(4):603-614. Roemer SF, Grinberg LT, Crary JF, Seeley WW, McKee AC, Kovacs GG, Beach TG, Duyckaerts C, Ferrer IA, Gelpi E, Lee EB, Revesz T, White CL, Yoshida M, Pereira FL, Whitney K, Ghayal NB, Dickson DW. PMID: 35947184; PMCID: PMC9468104.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    7. Caspase-6-cleaved tau is relevant in Alzheimer's disease and marginal in four-repeat tauopathies: Diagnostic and therapeutic implications. Neuropathol Appl Neurobiol. 2022 08; 48(5):e12819. Theofilas P, Piergies AMH, Oh I, Lee YB, Li SH, Pereira FL, Petersen C, Ehrenberg AJ, Eser RA, Ambrose AJ, Chin B, Yang T, Khan S, Ng R, Spina S, Seeley WW, Miller BL, Arkin MR, Grinberg LT. PMID: 35508761; PMCID: PMC9472770.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    8. Subcortical Neuronal Correlates of Sleep in Neurodegenerative Diseases. JAMA Neurol. 2022 05 01; 79(5):498-508. Oh JY, Walsh CM, Ranasinghe K, Mladinov M, Pereira FL, Petersen C, Falgàs N, Yack L, Lamore T, Nasar R, Lew C, Li S, Metzler T, Coppola Q, Pandher N, Le M, Heuer HW, Heinsen H, Spina S, Seeley WW, Kramer J, Rabinovici GD, Boxer AL, Miller BL, Vossel K, Neylan TC, Grinberg LT. PMID: 35377391; PMCID: PMC8981071.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    9. First report of infectious spleen and kidney necrosis virus in Nile tilapia in Brazil. Transbound Emerg Dis. 2022 Sep; 69(5):3008-3015. Figueiredo HCP, Tavares GC, Dorella FA, Rosa JCC, Marcelino SAC, Pierezan F, Pereira FL. PMID: 34223695.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    10. Re-sequencing and optical mapping reveals misassemblies and real inversions on Corynebacterium pseudotuberculosis genomes. Sci Rep. 2019 11 08; 9(1):16387. Sousa TJ, Parise D, Profeta R, Parise MTD, Gomide ACP, Kato RB, Pereira FL, Figueiredo HCP, Ramos R, Brenig B, Costa da Silva ALD, Ghosh P, Barh D, Góes-Neto A, Azevedo V. PMID: 31705053; PMCID: PMC6841979.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    11. Effects of temperature changes in the transcriptional profile of the emerging fish pathogen Francisella noatunensis subsp. orientalis. Microb Pathog. 2019 Aug; 133:103548. Pereira FL, Tavares GC, de Carvalho AF, Rosa JCC, Rezende CP, Leal CAG, Figueiredo HCP. PMID: 31112771.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    12. Streptococcus agalactiae Sequence Type 283 in Farmed Fish, Brazil. Emerg Infect Dis. 2019 04; 25(4):776-779. Leal CAG, Queiroz GA, Pereira FL, Tavares GC, Figueiredo HCP. PMID: 30882311; PMCID: PMC6433023.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    13. Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach. BMC Genomics. 2019 Jan 07; 20(1):11. Tavares GC, Pereira FL, Barony GM, Rezende CP, da Silva WM, de Souza GHMF, Verano-Braga T, de Carvalho Azevedo VA, Leal CAG, Figueiredo HCP. PMID: 30616502; PMCID: PMC6323687.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    14. Transcriptome and Proteome of Fish-Pathogenic Streptococcus agalactiae Are Modulated by Temperature. Front Microbiol. 2018; 9:2639. Tavares GC, Carvalho AF, Pereira FL, Rezende CP, Azevedo VAC, Leal CAG, Figueiredo HCP. PMID: 30450092; PMCID: PMC6224512.
      View in: PubMed   Mentions: 5  
    15. Complete genome sequencing of sixteen Francisella noatunensis subsp. orientalis isolates: A genomic approach for molecular characterization and spread dynamics of this clonal population. Genomics. 2018 11; 110(6):442-449. Pereira FL, Gonçalves LA, Tavares GC, Soares SC, Dorella FA, de Carvalho AF, Leibowitz MP, Leal CAG, Azevedo VAC, Figueiredo HCP. PMID: 30367926.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    16. Comparative proteomic analysis of four biotechnological strains Lactococcus lactis through label-free quantitative proteomics. Microb Biotechnol. 2019 03; 12(2):265-274. Silva WM, Sousa CS, Oliveira LC, Soares SC, Souza GFMH, Tavares GC, Resende CP, Folador EL, Pereira FL, Figueiredo H, Azevedo V. PMID: 30341804; PMCID: PMC6389847.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    17. Gut microbiome modulation during treatment of mucositis with the dairy bacterium Lactococcus lactis and recombinant strain secreting human antimicrobial PAP. Sci Rep. 2018 10 10; 8(1):15072. Carvalho R, Vaz A, Pereira FL, Dorella F, Aguiar E, Chatel JM, Bermudez L, Langella P, Fernandes G, Figueiredo H, Goes-Neto A, Azevedo V. PMID: 30305667; PMCID: PMC6180057.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansAnimalsCells
    18. First genome sequencing and comparative analyses of Corynebacterium pseudotuberculosis strains from Mexico. Stand Genomic Sci. 2018; 13:21. Parise D, Parise MTD, Viana MVC, Muñoz-Bucio AV, Cortés-Pérez YA, Arellano-Reynoso B, Díaz-Aparicio E, Dorella FA, Pereira FL, Carvalho AF, Figueiredo HCP, Ghosh P, Barh D, Gomide ACP, Azevedo VAC. PMID: 30338024; PMCID: PMC6180578.
      View in: PubMed   Mentions: 6  
    19. Mutation of the Surface Layer Protein SlpB Has Pleiotropic Effects in the Probiotic Propionibacterium freudenreichii CIRM-BIA 129. Front Microbiol. 2018; 9:1807. do Carmo FLR, Silva WM, Tavares GC, Ibraim IC, Cordeiro BF, Oliveira ER, Rabah H, Cauty C, da Silva SH, Canário Viana MV, Caetano ACB, Dos Santos RG, de Oliveira Carvalho RD, Jardin J, Pereira FL, Folador EL, Le Loir Y, Figueiredo HCP, Jan G, Azevedo V. PMID: 30174657; PMCID: PMC6107788.
      View in: PubMed   Mentions: 4  
    20. Transcriptome analysis of Corynebacterium pseudotuberculosis biovar Equi in two conditions of the environmental stress. Gene. 2018 Nov 30; 677:349-360. Gomide ACP, Ibraim IC, Alves JTC, de Sá PG, de Oliveira Silva YR, Santana MP, Silva WM, Folador EL, Mariano DCB, de Paula Castro TL, Barbosa S, Dorella FA, Carvalho AF, Pereira FL, Leal CAG, Figueiredo HCP, Azevedo V, Silva A, Folador ARC. PMID: 30098432.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    21. Label-free proteome of water buffalo (Bubalus bubalis) seminal plasma. Reprod Domest Anim. 2018 Oct; 53(5):1243-1246. Brito MF, Auler PA, Tavares GC, Rezende CP, Almeida GMF, Pereira FL, Leal CAG, Moura AA, Figueiredo HCP, Henry M. PMID: 29888513.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    22. Large-scale genomic analyses reveal the population structure and evolutionary trends of Streptococcus agalactiae strains in Brazilian fish farms. Sci Rep. 2017 10 19; 7(1):13538. Barony GM, Tavares GC, Pereira FL, Carvalho AF, Dorella FA, Leal CAG, Figueiredo HCP. PMID: 29051505; PMCID: PMC5648781.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    23. Use of MALDI-TOF Mass Spectrometry for the Fast Identification of Gram-Positive Fish Pathogens. Front Microbiol. 2017; 8:1492. Assis GBN, Pereira FL, Zegarra AU, Tavares GC, Leal CA, Figueiredo HCP. PMID: 28848512; PMCID: PMC5552964.
      View in: PubMed   Mentions: 13  
    24. Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo. PLoS One. 2017; 12(4):e0176347. Viana MVC, Figueiredo H, Ramos R, Guimarães LC, Pereira FL, Dorella FA, Selim SAK, Salaheldean M, Silva A, Wattam AR, Azevedo V. PMID: 28445543; PMCID: PMC5406005.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCellsPHPublic Health
    25. SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology. BMC Bioinformatics. 2016 Dec 15; 17(Suppl 18):456. Mariano DC, Pereira FL, Aguiar EL, Oliveira LC, Benevides L, Guimarães LC, Folador EL, Sousa TJ, Ghosh P, Barh D, Figueiredo HC, Silva A, Ramos RT, Azevedo VA. PMID: 28105921; PMCID: PMC5249034.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    26. Complete Genome Sequence of the Attenuated Corynebacterium pseudotuberculosis Strain T1. Genome Announc. 2016 Sep 08; 4(5). Almeida S, Loureiro D, Portela RW, Mariano DC, Sousa TJ, Pereira FL, Dorella FA, Carvalho AF, Moura-Costa LF, Leal CA, Figueiredo HC, Meyer R, Azevedo V. PMID: 27609922; PMCID: PMC5017227.
      View in: PubMed   Mentions: 3  
    27. Whole-Genome Sequence of Corynebacterium auriscanis Strain CIP 106629 Isolated from a Dog with Bilateral Otitis from the United Kingdom. Genome Announc. 2016 Aug 11; 4(4). Tiwari S, Jamal SB, Oliveira LC, Clermont D, Bizet C, Mariano D, de Carvalho PV, Souza F, Pereira FL, de Castro Soares S, Guimarães LC, Dorella F, Carvalho A, Leal C, Barh D, Figueiredo H, Hassan SS, Azevedo V, Silva A. PMID: 27516502; PMCID: PMC4982281.
      View in: PubMed   Mentions:
    28. Complete genome sequence of Streptococcus agalactiae strain GBS85147 serotype of type Ia isolated from human oropharynx. Stand Genomic Sci. 2016; 11:39. de Aguiar EL, Mariano DC, Viana MV, Benevides Lde J, de Souza Rocha F, de Castro Oliveira L, Pereira FL, Dorella FA, Leal CA, de Carvalho AF, Santos GS, Mattos-Guaraldi AL, Nagao PE, de Castro Soares S, Hassan SS, Pinto AC, Figueiredo HC, Azevedo V. PMID: 27274785; PMCID: PMC4891928.
      View in: PubMed   Mentions: 4  
    29. Whole-genome optical mapping reveals a mis-assembly between two rRNA operons of Corynebacterium pseudotuberculosis strain 1002. BMC Genomics. 2016 Apr 30; 17:315. Mariano DC, Sousa Tde J, Pereira FL, Aburjaile F, Barh D, Rocha F, Pinto AC, Hassan SS, Saraiva TD, Dorella FA, de Carvalho AF, Leal CA, Figueiredo HC, Silva A, Ramos RT, Azevedo VA. PMID: 27129708; PMCID: PMC4851793.
      View in: PubMed   Mentions: 9     Fields:    Translation:Cells
    30. Complete genome sequences of Francisella noatunensis subsp. orientalis strains FNO12, FNO24 and FNO190: a fish pathogen with genomic clonal behavior. Stand Genomic Sci. 2016; 11:30. Gonçalves LA, de Castro Soares S, Pereira FL, Dorella FA, de Carvalho AF, de Freitas Almeida GM, Leal CA, Azevedo V, Figueiredo HC. PMID: 27073591; PMCID: PMC4828924.
      View in: PubMed   Mentions: 2  
    31. The genome anatomy of Corynebacterium pseudotuberculosis VD57 a highly virulent strain causing Caseous lymphadenitis. Stand Genomic Sci. 2016; 11:29. Almeida S, Tiwari S, Mariano D, Souza F, Jamal SB, Coimbra N, Raittz RT, Dorella FA, Carvalho AF, Pereira FL, Soares Sde C, Leal CA, Barh D, Ghosh P, Figueiredo H, Moura-Costa LF, Portela RW, Meyer R, Silva A, Azevedo V. PMID: 27066196; PMCID: PMC4826502.
      View in: PubMed   Mentions: 12  
    32. Complete genome sequence of Peptoclostridium difficile strain Z31. Gut Pathog. 2016; 8:11. Pereira FL, Oliveira Júnior CA, Silva ROS, Dorella FA, Carvalho AF, Almeida GMF, Leal CAG, Lobato FCF, Figueiredo HCP. PMID: 28828039; PMCID: PMC5562067.
      View in: PubMed   Mentions: 9  
    33. Evaluating the efficacy of the new Ion PGM Hi-Q Sequencing Kit applied to bacterial genomes. Genomics. 2016 05; 107(5):189-98. Pereira FL, Soares SC, Dorella FA, Leal CA, Figueiredo HC. PMID: 27033417.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    34. Draft Genome Sequences of Two Pathogenic Corynebacterial Species Isolated from Cows. J Genomics. 2016; 4:7-9. Guimarães LC, Lopes T, Ramos RT, Carneiro AR, Cavalcante AL, Barreto D, de Sá PC, Veras AA, Rocha FS, Bagano P, Pereira FL, Dorella FA, Leal CA, Carvalho AF, Bizet C, Guiso N, Badell E, Figueiredo HC, Azevedo V, Silva A. PMID: 26958092; PMCID: PMC4780121.
      View in: PubMed   Mentions: 1  
    35. Complete Genome Sequence of Corynebacterium pseudotuberculosis Viscerotropic Strain N1. Genome Announc. 2016 Jan 28; 4(1). Loureiro D, Portela RW, Sousa TJ, Rocha F, Pereira FL, Dorella FA, Carvalho AF, Menezes N, Macedo ES, Moura-Costa LF, Meyer R, Leal CA, Figueiredo HC, Azevedo V. PMID: 26823597; PMCID: PMC4732350.
      View in: PubMed   Mentions: 3  
    36. Draft Genome Sequences of Two Salmonella enterica Serotype Infantis Strains Isolated from a Captive Western Lowland Gorilla (Gorilla gorilla gorilla) and a Cohabitant Black and White Tegu (Tupinambis merianae) in Brazil. Genome Announc. 2016 Jan 21; 4(1). Paixão TA, Coura FM, Malta MC, Tinoco HP, Pessanha AT, Pereira FL, Leal CA, Heinemann MB, Figueiredo HC, Santos RL. PMID: 26798099; PMCID: PMC4722266.
      View in: PubMed   Mentions: 2  
    37. Comparative genome analysis of Weissella ceti, an emerging pathogen of farm-raised rainbow trout. BMC Genomics. 2015 Dec 22; 16:1095. Figueiredo HC, Soares SC, Pereira FL, Dorella FA, Carvalho AF, Teixeira JP, Azevedo VA, Leal CA. PMID: 26694728; PMCID: PMC4687380.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    38. Draft Genome Sequences of Two Species of "Difficult-to-Identify" Human-Pathogenic Corynebacteria: Implications for Better Identification Tests. J Genomics. 2015; 3:82-4. Pacheco LG, Mattos-Guaraldi AL, Santos CS, Veras AA, Guimarães LC, Abreu V, Pereira FL, Soares SC, Dorella FA, Carvalho AF, Leal CG, Figueiredo HC, Ramos JN, Vieira VV, Farfour E, Guiso N, Hirata R, Azevedo V, Silva A, Ramos RT. PMID: 26516374; PMCID: PMC4618292.
      View in: PubMed   Mentions: 2  
    39. MapRepeat: an approach for effective assembly of repetitive regions in prokaryotic genomes. Bioinformation. 2015; 11(6):276-9. Mariano DC, Pereira FL, Ghosh P, Barh D, Figueiredo HC, Silva A, Ramos RT, Azevedo VA. PMID: 26229287; PMCID: PMC4512001.
      View in: PubMed   Mentions: 10  
    40. Genome Sequence of Corynebacterium ulcerans Strain FRC11. Genome Announc. 2015 Mar 12; 3(2). Benevides Lde J, Viana MV, Mariano DC, Rocha Fde S, Bagano PC, Folador EL, Pereira FL, Dorella FA, Leal CA, Carvalho AF, Soares Sde C, Carneiro A, Ramos R, Badell-Ocando E, Guiso N, Silva A, Figueiredo H, Azevedo V, Guimarães LC. PMID: 25767241; PMCID: PMC4357763.
      View in: PubMed   Mentions: 3  
    41. Genome Sequence of Corynebacterium ulcerans Strain 210932. Genome Announc. 2014 Nov 26; 2(6). Viana MV, de Jesus Benevides L, Batista Mariano DC, de Souza Rocha F, Bagano Vilas Boas PC, Folador EL, Pereira FL, Alves Dorella F, Gomes Leal CA, Fiorini de Carvalho A, Silva A, de Castro Soares S, Pereira Figueiredo HC, Azevedo V, Guimarães LC. PMID: 25428977; PMCID: PMC4246169.
      View in: PubMed   Mentions: 2  
    42. Genome Sequence of Lactococcus lactis subsp. lactis NCDO 2118, a GABA-Producing Strain. Genome Announc. 2014 Oct 02; 2(5). Oliveira LC, Saraiva TD, Soares SC, Ramos RT, Sá PH, Carneiro AR, Miranda F, Freire M, Renan W, Júnior AF, Santos AR, Pinto AC, Souza BM, Castro CP, Diniz CA, Rocha CS, Mariano DC, de Aguiar EL, Folador EL, Barbosa EG, Aburjaile FF, Gonçalves LA, Guimarães LC, Azevedo M, Agresti PC, Silva RF, Tiwari S, Almeida SS, Hassan SS, Pereira VB, Abreu VA, Pereira UP, Dorella FA, Carvalho AF, Pereira FL, Leal CA, Figueiredo HC, Silva A, Miyoshi A, Azevedo V. PMID: 25278529; PMCID: PMC4183873.
      View in: PubMed   Mentions: 18  
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