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David Bulkley, PhD

Title(s)RESEARCHER, Biochemistry and Biophysics
SchoolSchool of Medicine
AddressLocation Required
Varies CA 00000
Phone415-514-9708
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    Collapse Research 
    Collapse Research Activities and Funding
    Cryo-EM structures of a serotonin gated ion channel
    NIH F32GM113360Feb 1, 2015 - Jan 31, 2017
    Role: Principal Investigator

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    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Bivalent binding of a fully human IgG to the SARS-CoV-2 spike proteins reveals mechanisms of potent neutralization. bioRxiv. 2020 Jul 15. Wang B, Asarnow D, Lee WH, Huang CW, Faust B, Ng PML, Ngoh EZX, Bohn M, Bulkley D, Pizzorno A, Tan HC, Lee CY, Minhat RA, Terrier O, Soh MK, Teo FJ, Yeap YYC, Hu Y, Seah SGK, Maurer-Stroh S, Renia L, Hanson BJ, Rosa-Calatrava M, Manglik A, Cheng Y, Craik CS, Wang CI. PMID: 32699850.
      View in: PubMed   Mentions:
    2. Ion transport and regulation in a synaptic vesicle glutamate transporter. Science. 2020 05 22; 368(6493):893-897. Li F, Eriksen J, Finer-Moore J, Chang R, Nguyen P, Bowen A, Myasnikov A, Yu Z, Bulkley D, Cheng Y, Edwards RH, Stroud RM. PMID: 32439795.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    3. Abstract OR-16: High Resolution Cryo-Electron Microscopy and New Direct Electron Detector from Gatan - K3. International Journal of Biomedicine. 2019 Jun 30; 9(Suppl_1):s12-s12. Alexander Myasnikov, Shawn Zheng, David Bulkley, Yifan Cheng, David Agard. .
      View in: Publisher Site   Mentions:
    4. Structural Basis for Cholesterol Transport-like Activity of the Hedgehog Receptor Patched. Cell. 2018 11 15; 175(5):1352-1364.e14. Zhang Y, Bulkley DP, Xin Y, Roberts KJ, Asarnow DE, Sharma A, Myers BR, Cho W, Cheng Y, Beachy PA. PMID: 30415841.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    5. K3 - A First Look at The New Direct Electron Detection Camera from Gatan Company. Microscopy and Microanalysis. 2018 Aug 1; 24(S1):890-891. Alexander Myasnikov, Shawn Zheng, David Bulkley, Yifan Cheng, David Agard. .
      View in: Publisher Site   Mentions:
    6. A simple and robust procedure for preparing graphene-oxide cryo-EM grids. J Struct Biol. 2018 10; 204(1):80-84. Palovcak E, Wang F, Zheng SQ, Yu Z, Li S, Betegon M, Bulkley D, Agard DA, Cheng Y. PMID: 30017701.
      View in: PubMed   Mentions: 7     Fields:    
    7. Hydrophobic pore gates regulate ion permeation in polycystic kidney disease 2 and 2L1 channels. Nat Commun. 2018 06 13; 9(1):2302. Zheng W, Yang X, Hu R, Cai R, Hofmann L, Wang Z, Hu Q, Liu X, Bulkley D, Yu Y, Tang J, Flockerzi V, Cao Y, Cao E, Chen XZ. PMID: 29899465.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    8. Graphene-Oxide Substrate for High-Resolution Single Particle Cryo-EM. Biophysical Journal. 2018 Feb 1; 114(3):11a. Eugene Palovcak, David Bulkley, Shawn Zheng, Feng Wang, David Agard, Yifan Cheng. .
      View in: Publisher Site   Mentions:
    9. Cryo-EM structure of the Mechanotransduction Channel NOMPC. Biophysical Journal. 2018 Feb 1; 114(3):22a. Peng Jin, David Bulkley, Yanmeng Guo, Wei Zhang, Zhenhao Guo, Walter Huynh, Shenping Wu, Shan Meltzer, Tong Cheng, Lily Yeh Jan, Yuh-Nung Jan, Yifan Cheng. .
      View in: Publisher Site   Mentions:
    10. Cryo-EM structures of the TMEM16A calcium-activated chloride channel. Nature. 2017 12 21; 552(7685):426-429. Dang S, Feng S, Tien J, Peters CJ, Bulkley D, Lolicato M, Zhao J, Zuberbühler K, Ye W, Qi L, Chen T, Craik CS, Jan YN, Minor DL, Cheng Y, Jan LY. PMID: 29236684.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansAnimalsCells
    11. Electron cryo-microscopy structure of the mechanotransduction channel NOMPC. Nature. 2017 07 06; 547(7661):118-122. Jin P, Bulkley D, Guo Y, Zhang W, Guo Z, Huynh W, Wu S, Meltzer S, Cheng T, Jan LY, Jan YN, Cheng Y. PMID: 28658211.
      View in: PubMed   Mentions: 45     Fields:    Translation:AnimalsCells
    12. The Structure of the Polycystic Kidney Disease Channel PKD2 in Lipid Nanodiscs. Cell. 2016 Oct 20; 167(3):763-773.e11. Shen PS, Yang X, DeCaen PG, Liu X, Bulkley D, Clapham DE, Cao E. PMID: 27768895.
      View in: PubMed   Mentions: 64     Fields:    Translation:HumansAnimalsCells
    13. Conformational changes of elongation factor G on the ribosome during tRNA translocation. Cell. 2015 Jan 15; 160(1-2):219-27. Lin J, Gagnon MG, Bulkley D, Steitz TA. PMID: 25594181.
      View in: PubMed   Mentions: 41     Fields:    Translation:Cells
    14. Amicoumacin a inhibits translation by stabilizing mRNA interaction with the ribosome. Mol Cell. 2014 Nov 20; 56(4):531-40. Polikanov YS, Osterman IA, Szal T, Tashlitsky VN, Serebryakova MV, Kusochek P, Bulkley D, Malanicheva IA, Efimenko TA, Efremenkova OV, Konevega AL, Shaw KJ, Bogdanov AA, Rodnina MV, Dontsova OA, Mankin AS, Steitz TA, Sergiev PV. PMID: 25306919.
      View in: PubMed   Mentions: 23     Fields:    Translation:Cells
    15. Crystal structure of elongation factor 4 bound to a clockwise ratcheted ribosome. Science. 2014 Aug 08; 345(6197):684-7. Gagnon MG, Lin J, Bulkley D, Steitz TA. PMID: 25104389.
      View in: PubMed   Mentions: 22     Fields:    Translation:Cells
    16. Structural basis for the rescue of stalled ribosomes: structure of YaeJ bound to the ribosome. Science. 2012 Mar 16; 335(6074):1370-2. Gagnon MG, Seetharaman SV, Bulkley D, Steitz TA. PMID: 22422986.
      View in: PubMed   Mentions: 39     Fields:    Translation:Cells
    17. Structural Studies of the Functional Complexes of the 50S and 70S Ribosome, a Major Antibiotic Target. Macromolecular Crystallography. 2012 Jan 1; 135-148. Thomas A. Steitz, Gregor Blaha, C. Axel Innis, Robin Evans Stanley, David Bulkley. .
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    18. Structural studies of complexes of the 70S ribosome. Ribosomes. 2011 Jan 1; 31-43. C. Axel Innis, Gregor Blaha, David Bulkley, Thomas A. Steitz. .
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    19. Revisiting the structures of several antibiotics bound to the bacterial ribosome. Proc Natl Acad Sci U S A. 2010 Oct 05; 107(40):17158-63. Bulkley D, Innis CA, Blaha G, Steitz TA. PMID: 20876130.
      View in: PubMed   Mentions: 72     Fields:    Translation:Cells
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