Peter Turnbaugh, PhD

Title(s)Professor, Microbiology and Immunology
SchoolSchool of Medicine
Address513 Parnassus Ave, HSW, #1529
San Francisco CA 94143
Phone415-502-3237
ORCID ORCID Icon0000-0002-0888-2875 Additional info
vCardDownload vCard

    Collapse Biography 
    Collapse Education and Training
    Whitman College, Walla Walla, WAB.A.05/2003Biochemistry, Biophysics, and Molecular Biology
    Washington University in Saint Louis, St. Louis, MOPh.D.05/2009Molecular Genetics and Genomics
    University of California, San Francisco, CA09/2020Diversity, Equity, and Inclusion Champion Training
    Collapse Awards and Honors
    1999National Merit Scholar
    2006  - 2009NSF Graduate Fellowship
    2009David Kipnis Award in Biomedical Sciences
    2010Philip Needleman Pharmacology Prize
    2015Young Investigator Grant for Probiotics Research
    2016Damon Runyon-Rachleff Cancer Innovator
    2016Searle Scholar
    2017CZ Biohub Investigator
    2018ASM Young Investigator Award
    Burroughs Wellcome Fund2018Investigators in the Pathogenesis of Infectious Disease

    Collapse Overview 
    Collapse Overview
    I lead an interdisciplinary group of microbiome researchers committed to understanding host-associated microbes, reducing these complex microbial ecologies to molecular mechanism, and applying these lessons to improve the practice of medicine. Our three major topics of interest right now are pharmacology, nutrition, and phage biology. While we love sequencing and gnotobiotic mice, our work is question-driven not limited to a specific approach. Prior studies have ranged from the molecular (e.g., biochemistry, bacterial genetics, structural biology) to the organismal (e.g., gnotobiotic mice, conventional animals, and clinical trials) to the ecological (e.g., synthetic microbial communities and metagenomic sequencing). We embrace high-risk, high-reward projects and thrive on collaboration.

    Collapse Research 
    Collapse Research Activities and Funding
    Establishing the feasibility of editing the human gut microbiome
    NIH R01AT011117Aug 1, 2020 - Jul 31, 2024
    Role: Principal Investigator
    Host-microbiome interactions shape the metabolic effects of ketogenic diets
    NIH R01DK114034Jul 1, 2020 - Mar 31, 2025
    Role: Principal Investigator
    Employing the gut microbiome to accelerate effective initiation of rheumatoid arthritis therapy
    NIH R01AR074500Sep 1, 2019 - Aug 31, 2024
    Role: Co-Principal Investigator
    (PQ10) Harnessing the human gut microbiome to predict chemotherapy outcomes
    NIH R21CA227232Jun 21, 2018 - May 31, 2021
    Role: Principal Investigator
    Predicting and preventing drug metabolism by the human gut microbiome
    NIH R01HL122593Mar 1, 2016 - Jul 31, 2025
    Role: Principal Investigator

    Collapse ORNG Applications 
    Collapse Featured Publications

    Collapse Featured Content 
    Collapse Twitter
    Collapse Featured Videos

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Simvastatin induces human gut bacterial cell surface genes. Mol Microbiol. 2023 Sep 15. Escalante V, Nayak RR, Noecker C, Babdor J, Spitzer M, Deutschbauer AM, Turnbaugh PJ. PMID: 37712143.
      View in: PubMed   Mentions:
    2. The global anaerobic metabolism regulator fnr is necessary for the degradation of food dyes and drugs by Escherichia coli. mBio. 2023 Aug 29; e0157323. Pieper LM, Spanogiannopoulos P, Volk RF, Miller CJ, Wright AT, Turnbaugh PJ. PMID: 37642463.
      View in: PubMed   Mentions:
    3. Microbiome single cell atlases generated with a commercial instrument. bioRxiv. 2023 Aug 10. Li X, Xu L, Demaree B, Noecker C, Bisanz JE, Weisgerber DW, Modavi C, Turnbaugh PJ, Abate AR. PMID: 37609281; PMCID: PMC10441329.
      View in: PubMed   Mentions:
    4. Variety of Fruit and Vegetables and Alcohol Intake are Associated with Gut Microbial Species and Gene Abundance in Colorectal Cancer Survivors. Am J Clin Nutr. 2023 09; 118(3):518-529. Kyaw TS, Upadhyay V, Tolstykh I, Van Loon K, Laffan A, Stanfield D, Gempis D, Kenfield SA, Chan JM, Piawah S, Atreya CE, Ng K, Venook A, Kidder W, Turnbaugh PJ, Van Blarigan EL. PMID: 37474105.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    5. SIMMER employs similarity algorithms to accurately identify human gut microbiome species and enzymes capable of known chemical transformations. Elife. 2023 Jun 12; 12. Bustion AE, Nayak RR, Agrawal A, Turnbaugh PJ, Pollard KS. PMID: 37306300; PMCID: PMC10289814.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    6. Mild SARS-CoV-2 infection results in long-lasting microbiota instability. mBio. 2023 08 31; 14(4):e0088923. Upadhyay V, Suryawanshi RK, Tasoff P, McCavitt-Malvido M, Kumar RG, Murray VW, Noecker C, Bisanz JE, Hswen Y, Ha CWY, Sreekumar B, Chen IP, Lynch SV, Ott M, Lee S, Turnbaugh PJ. PMID: 37294090; PMCID: PMC10470529.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    7. Systems biology elucidates the distinctive metabolic niche filled by the human gut microbe Eggerthella lenta. PLoS Biol. 2023 05; 21(5):e3002125. Noecker C, Sanchez J, Bisanz JE, Escalante V, Alexander M, Trepka K, Heinken A, Liu Y, Dodd D, Thiele I, DeFelice BC, Turnbaugh PJ. PMID: 37205710; PMCID: PMC10234575.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    8. Forging the microbiome to help us live long and prosper. PLoS Biol. 2023 04; 21(4):e3002087. Rock RR, Turnbaugh PJ. PMID: 37018375; PMCID: PMC10109465.
      View in: PubMed   Mentions:    Fields:    
    9. Genetic manipulation of the human gut bacterium Eggerthella lenta reveals a widespread family of transcriptional regulators. Nat Commun. 2022 Dec 09; 13(1):7624. Dong X, Guthrie BGH, Alexander M, Noecker C, Ramirez L, Glasser NR, Turnbaugh PJ, Balskus EP. PMID: 36494336; PMCID: PMC9734109.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    10. Mild SARS-CoV-2 infection results in long-lasting microbiota instability. bioRxiv. 2022 Dec 08. Upadhyay V, Suryawanshi R, Tasoff P, McCavitt-Malvido M, Kumar GR, Murray VW, Noecker C, Bisanz JE, Hswen Y, Ha C, Sreekumar B, Chen IP, Lynch SV, Ott M, Lee S, Turnbaugh PJ. PMID: 36523400; PMCID: PMC9753784.
      View in: PubMed   Mentions: 1  
    11. nicX-ing bad habits with your microbial friends. Nat Metab. 2022 Nov; 4(11):1442-1443. Upadhyay V, Turnbaugh PJ. PMID: 36333489.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    12. Host and gut bacteria share metabolic pathways for anti-cancer drug metabolism. Nat Microbiol. 2022 10; 7(10):1605-1620. Spanogiannopoulos P, Kyaw TS, Guthrie BGH, Bradley PH, Lee JV, Melamed J, Malig YNA, Lam KN, Gempis D, Sandy M, Kidder W, Van Blarigan EL, Atreya CE, Venook A, Gerona RR, Goga A, Pollard KS, Turnbaugh PJ. PMID: 36138165; PMCID: PMC9530025.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    13. Tiny Gatekeepers: Microbial Control of Host Drug Transporters. Clin Pharmacol Ther. 2022 09; 112(3):443-445. Kyaw TS, Turnbaugh PJ. PMID: 35668713; PMCID: PMC9540778.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    14. Designed secretion deters microbiome depletion. Nat Microbiol. 2022 06; 7(6):745-746. Olson CA, Turnbaugh PJ. PMID: 35606423.
      View in: PubMed   Mentions:    Fields:    
    15. The tiny pharmacists within: How the microbiome impacts the treatment of human disease. The FASEB Journal. 2022 May 13; 36(S1). Turnbaugh TP. .
      View in: Publisher Site   Mentions:
    16. Fluoropyrimidine Bioactivation and Metabolism by the Gut Microbiome. The FASEB Journal. 2022 May 13; 36(S1). Guthrie GB, Turnbaugh TP. .
      View in: Publisher Site   Mentions:
    17. Tu1517: MICROBIAL SIGNALS, MYD88, AND LYMPHOTOXIN DRIVE TNFINDEPENDENT DEATH OF A20 AND ABIN-1 DEFICIENT EPITHELIUM. Gastroenterology. 2022 May 1; 162(7):s-995. Rusu RI, Mennillo ME, Bain BJ, Li LZ, Sun SX, Ly LK, Rosli RY, Naser NM, Wang WZ, Advincula AR, Achacoso AP, Shao SL, Razani RB, Klein KO, Marson MA, Turnbaugh TJ, Turnbaugh TP, Malynn MB, Ma MA, Kattah KM. .
      View in: Publisher Site   Mentions:
    18. Effects of caloric restriction on the gut microbiome are linked with immune senescence. Microbiome. 2022 04 04; 10(1):57. Sbierski-Kind J, Grenkowitz S, Schlickeiser S, Sandforth A, Friedrich M, Kunkel D, Glauben R, Brachs S, Mai K, Thürmer A, Radonic A, Drechsel O, Turnbaugh PJ, Bisanz JE, Volk HD, Spranger J, von Schwartzenberg RJ. PMID: 35379337; PMCID: PMC8978410.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    19. Human gut bacteria produce ΤΗ17-modulating bile acid metabolites. Nature. 2022 03; 603(7903):907-912. Paik D, Yao L, Zhang Y, Bae S, D'Agostino GD, Zhang M, Kim E, Franzosa EA, Avila-Pacheco J, Bisanz JE, Rakowski CK, Vlamakis H, Xavier RJ, Turnbaugh PJ, Longman RS, Krout MR, Clish CB, Rastinejad F, Huttenhower C, Huh JR, Devlin AS. PMID: 35296854; PMCID: PMC9132548.
      View in: PubMed   Mentions: 77     Fields:    Translation:HumansCells
    20. Synthetic glycans control gut microbiome structure and mitigate colitis in mice. Nat Commun. 2022 03 10; 13(1):1244. Tolonen AC, Beauchemin N, Bayne C, Li L, Tan J, Lee J, Meehan BM, Meisner J, Millet Y, LeBlanc G, Kottler R, Rapp E, Murphy C, Turnbaugh PJ, von Maltzahn G, Liu CM, van Hylckama Vlieg JET. PMID: 35273143; PMCID: PMC8913648.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    21. Microbial signals, MyD88, and lymphotoxin drive TNF-independent intestinal epithelial tissue damage. J Clin Invest. 2022 03 01; 132(5). Rusu I, Mennillo E, Bain JL, Li Z, Sun X, Ly KM, Rosli YY, Naser M, Wang Z, Advincula R, Achacoso P, Shao L, Razani B, Klein OD, Marson A, Turnbaugh JA, Turnbaugh PJ, Malynn BA, Ma A, Kattah MG. PMID: 35077396; PMCID: PMC8884902.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    22. Human gut bacterial metabolism drives Th17 activation and colitis. Cell Host Microbe. 2022 01 12; 30(1):17-30.e9. Alexander M, Ang QY, Nayak RR, Bustion AE, Sandy M, Zhang B, Upadhyay V, Pollard KS, Lynch SV, Turnbaugh PJ. PMID: 34822777; PMCID: PMC8785648.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansAnimalsCells
    23. Reporting guidelines for human microbiome research: the STORMS checklist. Nat Med. 2021 11; 27(11):1885-1892. Mirzayi C, Renson A, Genomic Standards Consortium, Massive Analysis and Quality Control Society, Zohra F, Elsafoury S, Geistlinger L, Kasselman LJ, Eckenrode K, van de Wijgert J, Loughman A, Marques FZ, MacIntyre DA, Arumugam M, Azhar R, Beghini F, Bergstrom K, Bhatt A, Bisanz JE, Braun J, Bravo HC, Buck GA, Bushman F, Casero D, Clarke G, Collado MC, Cotter PD, Cryan JF, Demmer RT, Devkota S, Elinav E, Escobar JS, Fettweis J, Finn RD, Fodor AA, Forslund S, Franke A, Furlanello C, Gilbert J, Grice E, Haibe-Kains B, Handley S, Herd P, Holmes S, Jacobs JP, Karstens L, Knight R, Knights D, Koren O, Kwon DS, Langille M, Lindsay B, McGovern D, McHardy AC, McWeeney S, Mueller NT, Nezi L, Olm M, Palm N, Pasolli E, Raes J, Redinbo MR, Rühlemann M, Balfour Sartor R, Schloss PD, Schriml L, Segal E, Shardell M, Sharpton T, Smirnova E, Sokol H, Sonnenburg JL, Srinivasan S, Thingholm LB, Turnbaugh PJ, Upadhyay V, Walls RL, Wilmes P, Yamada T, Zeller G, Zhang M, Zhao N, Zhao L, Bao W, Culhane A, Devanarayan V, Dopazo J, Fan X, Fischer M, Jones W, Kusko R, Mason CE, Mercer TR, Sansone SA, Scherer A, Shi L, Thakkar S, Tong W, Wolfinger R, Hunter C, Segata N, Huttenhower C, Dowd JB, Jones HE, Waldron L. PMID: 34789871; PMCID: PMC9105086.
      View in: PubMed   Mentions: 70     Fields:    Translation:Humans
    24. Phage-delivered CRISPR-Cas9 for strain-specific depletion and genomic deletions in the gut microbiome. Cell Rep. 2021 11 02; 37(5):109930. Lam KN, Spanogiannopoulos P, Soto-Perez P, Alexander M, Nalley MJ, Bisanz JE, Nayak RR, Weakley AM, Yu FB, Turnbaugh PJ. PMID: 34731631; PMCID: PMC8591988.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    25. The East Asian gut microbiome is distinct from colocalized White subjects and connected to metabolic health. Elife. 2021 10 07; 10. Ang QY, Alba DL, Upadhyay V, Bisanz JE, Cai J, Lee HL, Barajas E, Wei G, Noecker C, Patterson AD, Koliwad SK, Turnbaugh PJ. PMID: 34617511; PMCID: PMC8612731.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    26. Caloric restriction disrupts the microbiota and colonization resistance. Nature. 2021 07; 595(7866):272-277. von Schwartzenberg RJ, Bisanz JE, Lyalina S, Spanogiannopoulos P, Ang QY, Cai J, Dickmann S, Friedrich M, Liu SY, Collins SL, Ingebrigtsen D, Miller S, Turnbaugh JA, Patterson AD, Pollard KS, Mai K, Spranger J, Turnbaugh PJ. PMID: 34163067; PMCID: PMC8959578.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansAnimalsCells
    27. The Pretreatment Gut Microbiome Is Associated With Lack of Response to Methotrexate in New-Onset Rheumatoid Arthritis. Arthritis Rheumatol. 2021 06; 73(6):931-942. Artacho A, Isaac S, Nayak R, Flor-Duro A, Alexander M, Koo I, Manasson J, Smith PB, Rosenthal P, Homsi Y, Gulko P, Pons J, Puchades-Carrasco L, Izmirly P, Patterson A, Abramson SB, Pineda-Lucena A, Turnbaugh PJ, Ubeda C, Scher JU. PMID: 33314800.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansCells
    28. Dissecting the contribution of host genetics and the microbiome in complex behaviors. Cell. 2021 04 01; 184(7):1740-1756.e16. Buffington SA, Dooling SW, Sgritta M, Noecker C, Murillo OD, Felice DF, Turnbaugh PJ, Costa-Mattioli M. PMID: 33705688; PMCID: PMC8996745.
      View in: PubMed   Mentions: 44     Fields:    Translation:AnimalsCells
    29. Functional genetics of human gut commensal Bacteroides thetaiotaomicron reveals metabolic requirements for growth across environments. Cell Rep. 2021 03 02; 34(9):108789. Liu H, Shiver AL, Price MN, Carlson HK, Trotter VV, Chen Y, Escalante V, Ray J, Hern KE, Petzold CJ, Turnbaugh PJ, Huang KC, Arkin AP, Deutschbauer AM. PMID: 33657378; PMCID: PMC8121099.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansAnimalsCells
    30. Methotrexate impacts conserved pathways in diverse human gut bacteria leading to decreased host immune activation. Cell Host Microbe. 2021 03 10; 29(3):362-377.e11. Nayak RR, Alexander M, Deshpande I, Stapleton-Gray K, Rimal B, Patterson AD, Ubeda C, Scher JU, Turnbaugh PJ. PMID: 33440172; PMCID: PMC7954989.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansAnimalsCells
    31. A thermogenic fat-epithelium cell axis regulates intestinal disease tolerance. Proc Natl Acad Sci U S A. 2020 12 15; 117(50):32029-32037. Man K, Bowman C, Braverman KN, Escalante V, Tian Y, Bisanz JE, Ganeshan K, Wang B, Patterson A, Bayrer JR, Turnbaugh PJ, Chawla A. PMID: 33257580; PMCID: PMC7749324.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    32. Gut microbiota-specific IgA+ B cells traffic to the CNS in active multiple sclerosis. Sci Immunol. 2020 11 20; 5(53). Pröbstel AK, Zhou X, Baumann R, Wischnewski S, Kutza M, Rojas OL, Sellrie K, Bischof A, Kim K, Ramesh A, Dandekar R, Greenfield AL, Schubert RD, Bisanz JE, Vistnes S, Khaleghi K, Landefeld J, Kirkish G, Liesche-Starnecker F, Ramaglia V, Singh S, Tran EB, Barba P, Zorn K, Oechtering J, Forsberg K, Shiow LR, Henry RG, Graves J, Cree BAC, Hauser SL, Kuhle J, Gelfand JM, Andersen PM, Schlegel J, Turnbaugh PJ, Seeberger PH, Gommerman JL, Wilson MR, Schirmer L, Baranzini SE. PMID: 33219152; PMCID: PMC8043673.
      View in: PubMed   Mentions: 70     Fields:    Translation:HumansCells
    33. Stressed-out gut bacteria are pterin up gut inflammation. Nat Microbiol. 2020 11; 5(11):1316-1318. Alexander M, Turnbaugh PJ. PMID: 33087901.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    34. Deconstructing Mechanisms of Diet-Microbiome-Immune Interactions. Immunity. 2020 08 18; 53(2):264-276. Alexander M, Turnbaugh PJ. PMID: 32814025; PMCID: PMC7441819.
      View in: PubMed   Mentions: 42     Fields:    Translation:Humans
    35. Investigating Ketone Bodies as Immunometabolic Countermeasures against Respiratory Viral Infections. Med (N Y). 2020 12 18; 1(1):43-65. Stubbs BJ, Koutnik AP, Goldberg EL, Upadhyay V, Turnbaugh PJ, Verdin E, Newman JC. PMID: 32838361; PMCID: PMC7362813.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansCellsPHPublic Health
    36. Bacterial metabolism rescues the inhibition of intestinal drug absorption by food and drug additives. Proc Natl Acad Sci U S A. 2020 07 07; 117(27):16009-16018. Zou L, Spanogiannopoulos P, Pieper LM, Chien HC, Cai W, Khuri N, Pottel J, Vora B, Ni Z, Tsakalozou E, Zhang W, Shoichet BK, Giacomini KM, Turnbaugh PJ. PMID: 32571913; PMCID: PMC7355017.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    37. Probing the tumor micro(b)environment. Science. 2020 05 29; 368(6494):938-939. Atreya CE, Turnbaugh PJ. PMID: 32467376.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    38. Ketogenic Diets Alter the Gut Microbiome Resulting in Decreased Intestinal Th17 Cells. Cell. 2020 06 11; 181(6):1263-1275.e16. Ang QY, Alexander M, Newman JC, Tian Y, Cai J, Upadhyay V, Turnbaugh JA, Verdin E, Hall KD, Leibel RL, Ravussin E, Rosenbaum M, Patterson AD, Turnbaugh PJ. PMID: 32437658; PMCID: PMC7293577.
      View in: PubMed   Mentions: 154     Fields:    Translation:HumansAnimalsCells
    39. A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria. Cell Host Microbe. 2020 06 10; 27(6):1001-1013.e9. Bisanz JE, Soto-Perez P, Noecker C, Aksenov AA, Lam KN, Kenney GE, Bess EN, Haiser HJ, Kyaw TS, Yu FB, Rekdal VM, Ha CWY, Devkota S, Balskus EP, Dorrestein PC, Allen-Vercoe E, Turnbaugh PJ. PMID: 32348781; PMCID: PMC7292766.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimalsCells
    40. Effects of underfeeding and oral vancomycin on gut microbiome and nutrient absorption in humans. Nat Med. 2020 04; 26(4):589-598. Basolo A, Hohenadel M, Ang QY, Piaggi P, Heinitz S, Walter M, Walter P, Parrington S, Trinidad DD, von Schwartzenberg RJ, Turnbaugh PJ, Krakoff J. PMID: 32235930.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansCells
    41. Non-catalytic ubiquitin binding by A20 prevents psoriatic arthritis-like disease and inflammation. Nat Immunol. 2020 04; 21(4):422-433. Razani B, Whang MI, Kim FS, Nakamura MC, Sun X, Advincula R, Turnbaugh JA, Pendse M, Tanbun P, Achacoso P, Turnbaugh PJ, Malynn BA, Ma A. PMID: 32205880; PMCID: PMC7195210.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    42. Pharmacomicrobiomics in inflammatory arthritis: gut microbiome as modulator of therapeutic response. Nat Rev Rheumatol. 2020 05; 16(5):282-292. Scher JU, Nayak RR, Ubeda C, Turnbaugh PJ, Abramson SB. PMID: 32157196.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansAnimals
    43. A widely distributed metalloenzyme class enables gut microbial metabolism of host- and diet-derived catechols. Elife. 2020 02 18; 9. Maini Rekdal V, Nol Bernadino P, Luescher MU, Kiamehr S, Le C, Bisanz JE, Turnbaugh PJ, Bess EN, Balskus EP. PMID: 32067637; PMCID: PMC7028382.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    44. Sensing Living Bacteria in Vivo Using d-Alanine-Derived 11C Radiotracers. ACS Cent Sci. 2020 Feb 26; 6(2):155-165. Parker MFL, Luu JM, Schulte B, Huynh TL, Stewart MN, Sriram R, Yu MA, Jivan S, Turnbaugh PJ, Flavell RR, Rosenberg OS, Ohliger MA, Wilson DM. PMID: 32123733; PMCID: PMC7047270.
      View in: PubMed   Mentions: 19  
    45. Diet should be a tool for researchers, not a treatment. Nature. 2020 01; 577(7792):S23. Turnbaugh PJ. PMID: 31996822.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    46. Genetic basis for the cooperative bioactivation of plant lignans by Eggerthella lenta and other human gut bacteria. Nat Microbiol. 2020 01; 5(1):56-66. Bess EN, Bisanz JE, Yarza F, Bustion A, Rich BE, Li X, Kitamura S, Waligurski E, Ang QY, Alba DL, Spanogiannopoulos P, Nayfach S, Koliwad SK, Wolan DW, Franke AA, Turnbaugh PJ. PMID: 31686027; PMCID: PMC6941677.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimalsCells
    47. Using DNA Metabarcoding To Evaluate the Plant Component of Human Diets: a Proof of Concept. mSystems. 2019 Oct 08; 4(5). Reese AT, Kartzinel TR, Petrone BL, Turnbaugh PJ, Pringle RM, David LA. PMID: 31594830; PMCID: PMC6787566.
      View in: PubMed   Mentions: 13     Fields:    
    48. Cooking shapes the structure and function of the gut microbiome. Nat Microbiol. 2019 12; 4(12):2052-2063. Carmody RN, Bisanz JE, Bowen BP, Maurice CF, Lyalina S, Louie KB, Treen D, Chadaideh KS, Maini Rekdal V, Bess EN, Spanogiannopoulos P, Ang QY, Bauer KC, Balon TW, Pollard KS, Northen TR, Turnbaugh PJ. PMID: 31570867; PMCID: PMC6886678.
      View in: PubMed   Mentions: 51     Fields:    Translation:HumansAnimalsCells
    49. CRISPR-Cas System of a Prevalent Human Gut Bacterium Reveals Hyper-targeting against Phages in a Human Virome Catalog. Cell Host Microbe. 2019 Sep 11; 26(3):325-335.e5. Soto-Perez P, Bisanz JE, Berry JD, Lam KN, Bondy-Denomy J, Turnbaugh PJ. PMID: 31492655; PMCID: PMC6936622.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansCells
    50. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019 Sep; 37(9):1091. Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG. PMID: 31399723.
      View in: PubMed   Mentions: 130     Fields:    
    51. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019 08; 37(8):852-857. Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG. PMID: 31341288; PMCID: PMC7015180.
      View in: PubMed   Mentions: 4499     Fields:    Translation:Humans
    52. Meta-Analysis Reveals Reproducible Gut Microbiome Alterations in Response to a High-Fat Diet. Cell Host Microbe. 2019 08 14; 26(2):265-272.e4. Bisanz JE, Upadhyay V, Turnbaugh JA, Ly K, Turnbaugh PJ. PMID: 31324413; PMCID: PMC6708278.
      View in: PubMed   Mentions: 104     Fields:    Translation:HumansAnimalsCells
    53. Precision Medicine Goes Microscopic: Engineering the Microbiome to Improve Drug Outcomes. Cell Host Microbe. 2019 Jul 10; 26(1):22-34. Lam KN, Alexander M, Turnbaugh PJ. PMID: 31295421; PMCID: PMC6709864.
      View in: PubMed   Mentions: 37     Fields:    Translation:Humans
    54. Discovery and inhibition of an interspecies gut bacterial pathway for Levodopa metabolism. Science. 2019 06 14; 364(6445). Maini Rekdal V, Bess EN, Bisanz JE, Turnbaugh PJ, Balskus EP. PMID: 31196984; PMCID: PMC7745125.
      View in: PubMed   Mentions: 197     Fields:    Translation:HumansAnimalsCells
    55. Nutrient Sensing in CD11c Cells Alters the Gut Microbiota to Regulate Food Intake and Body Mass. Cell Metab. 2019 08 06; 30(2):364-373.e7. Chagwedera DN, Ang QY, Bisanz JE, Leong YA, Ganeshan K, Cai J, Patterson AD, Turnbaugh PJ, Chawla A. PMID: 31130466; PMCID: PMC6687538.
      View in: PubMed   Mentions: 15     Fields:    Translation:Animals
    56. Megaphages infect Prevotella and variants are widespread in gut microbiomes. Nat Microbiol. 2019 04; 4(4):693-700. Devoto AE, Santini JM, Olm MR, Anantharaman K, Munk P, Tung J, Archie EA, Turnbaugh PJ, Seed KD, Blekhman R, Aarestrup FM, Thomas BC, Banfield JF. PMID: 30692672; PMCID: PMC6784885.
      View in: PubMed   Mentions: 68     Fields:    Translation:HumansAnimalsCells
    57. Predicting and preventing the inactivation of drugs by human gut bacteria. Drug Metabolism and Pharmacokinetics. 2019 Jan 1; 34(1):s10. Turnbaugh TP. .
      View in: Publisher Site   Mentions:
    58. How to Determine the Role of the Microbiome in Drug Disposition. Drug Metab Dispos. 2018 11; 46(11):1588-1595. Bisanz JE, Spanogiannopoulos P, Pieper LM, Bustion AE, Turnbaugh PJ. PMID: 30111623; PMCID: PMC7333656.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimals
    59. Broad collateral damage of drugs against the gut microbiome. Nat Rev Gastroenterol Hepatol. 2018 08; 15(8):457-458. Spanogiannopoulos P, Turnbaugh PJ. PMID: 29752457.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    60. Announcement of 2019 Keystone Symposia Conference: "Microbiome: Chemical Mechanisms and Biological Consequences". mSystems. 2018 Jul-Aug; 3(4). Balskus EP, Turnbaugh PJ, Wolan DW. PMID: 30057942; PMCID: PMC6060284.
      View in: PubMed   Mentions:    Fields:    
    61. A Metabolite-Triggered Tuft Cell-ILC2 Circuit Drives Small Intestinal Remodeling. Cell. 2018 07 12; 174(2):271-284.e14. Schneider C, O'Leary CE, von Moltke J, Liang HE, Ang QY, Turnbaugh PJ, Radhakrishnan S, Pellizzon M, Ma A, Locksley RM. PMID: 29887373; PMCID: PMC6046262.
      View in: PubMed   Mentions: 179     Fields:    Translation:AnimalsCells
    62. Discovery and characterization of a prevalent human gut bacterial enzyme sufficient for the inactivation of a family of plant toxins. Elife. 2018 05 15; 7. Koppel N, Bisanz JE, Pandelia ME, Turnbaugh PJ, Balskus EP. PMID: 29761785; PMCID: PMC5953540.
      View in: PubMed   Mentions: 50     Fields:    Translation:Humans
    63. Pathways and mechanisms linking dietary components to cardiometabolic disease: thinking beyond calories. Obes Rev. 2018 09; 19(9):1205-1235. Stanhope KL, Goran MI, Bosy-Westphal A, King JC, Schmidt LA, Schwarz JM, Stice E, Sylvetsky AC, Turnbaugh PJ, Bray GA, Gardner CD, Havel PJ, Malik V, Mason AE, Ravussin E, Rosenbaum M, Welsh JA, Allister-Price C, Sigala DM, Greenwood MRC, Astrup A, Krauss RM. PMID: 29761610; PMCID: PMC6530989.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansPHPublic Health
    64. The Metabolism of Fluoropyrimidine Anticancer Drugs by the Human Gut Microbiome. The FASEB Journal. 2018 Apr 1; 32:534.22-534.22. Spanogiannopoulos SP, Patteron PA, Turnbaugh TP. .
      View in: Publisher Site   Mentions:
    65. Making Millennial Medicine More Meta. mSystems. 2018 Mar-Apr; 3(2). Turnbaugh PJ. PMID: 29556544; PMCID: PMC5853181.
      View in: PubMed   Mentions:    Fields:    
    66. Grape proanthocyanidin-induced intestinal bloom of Akkermansia muciniphila is dependent on its baseline abundance and precedes activation of host genes related to metabolic health. J Nutr Biochem. 2018 06; 56:142-151. Zhang L, Carmody RN, Kalariya HM, Duran RM, Moskal K, Poulev A, Kuhn P, Tveter KM, Turnbaugh PJ, Raskin I, Roopchand DE. PMID: 29571008; PMCID: PMC5971143.
      View in: PubMed   Mentions: 32     Fields:    Translation:AnimalsCells
    67. Combining 16S rRNA gene variable regions enables high-resolution microbial community profiling. Microbiome. 2018 01 26; 6(1):17. Fuks G, Elgart M, Amir A, Zeisel A, Turnbaugh PJ, Soen Y, Shental N. PMID: 29373999; PMCID: PMC5787238.
      View in: PubMed   Mentions: 73     Fields:    Translation:AnimalsCells
    68. Chemical reaction vector embeddings: towards predicting drug metabolism in the human gut microbiome. Pac Symp Biocomput. 2018; 23:56-67. Mallory EK, Acharya A, Rensi SE, Turnbaugh PJ, Bright RA, Altman RB. PMID: 29218869; PMCID: PMC5771676.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    69. Microbes and Diet-Induced Obesity: Fast, Cheap, and Out of Control. Cell Host Microbe. 2017 Mar 08; 21(3):278-281. Turnbaugh PJ. PMID: 28279330; PMCID: PMC5751949.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansAnimalsCells
    70. Regulation of drug metabolism and toxicity by multiple factors of genetics, epigenetics, lncRNAs, gut microbiota, and diseases: a meeting report of the 21st International Symposium on Microsomes and Drug Oxidations (MDO). Acta Pharm Sin B. 2017 03; 7(2):241-248. Yu AM, Ingelman-Sundberg M, Cherrington NJ, Aleksunes LM, Zanger UM, Xie W, Jeong H, Morgan ET, Turnbaugh PJ, Klaassen CD, Bhatt AP, Redinbo MR, Hao P, Waxman DJ, Wang L, Zhong XB. PMID: 28388695; PMCID: PMC5343155.
      View in: PubMed   Mentions: 10  
    71. mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking. mSystems. 2016 Sep-Oct; 1(5). Bokulich NA, Rideout JR, Mercurio WG, Shiffer A, Wolfe B, Maurice CF, Dutton RJ, Turnbaugh PJ, Knight R, Caporaso JG. PMID: 27822553; PMCID: PMC5080401.
      View in: PubMed   Mentions: 39     Fields:    
    72. Metabolism of anticancer drugs by the human gut microbiome. Toxicology Letters. 2016 Oct 1; 259:s42-s43. Spanogiannopoulos SP, Turnbaugh TP. .
      View in: Publisher Site   Mentions:
    73. Mirror, mirror on the wall: which microbiomes will help heal them all? BMC Med. 2016 May 04; 14:72. Nayak RR, Turnbaugh PJ. PMID: 27146150; PMCID: PMC4857263.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    74. The microbial pharmacists within us: a metagenomic view of xenobiotic metabolism. Nat Rev Microbiol. 2016 Apr; 14(5):273-87. Spanogiannopoulos P, Bess EN, Carmody RN, Turnbaugh PJ. PMID: 26972811; PMCID: PMC5243131.
      View in: PubMed   Mentions: 240     Fields:    Translation:HumansAnimals
    75. Siri, What Should I Eat? Cell. 2015 Nov 19; 163(5):1051-1052. Jumpertz von Schwartzenberg R, Turnbaugh PJ. PMID: 26590412.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    76. Marked seasonal variation in the wild mouse gut microbiota. ISME J. 2015 Nov; 9(11):2423-34. Maurice CF, Knowles SC, Ladau J, Pollard KS, Fenton A, Pedersen AB, Turnbaugh PJ. PMID: 26023870; PMCID: PMC4611506.
      View in: PubMed   Mentions: 139     Fields:    Translation:AnimalsCells
    77. Gut microbial succession follows acute secretory diarrhea in humans. mBio. 2015 May 19; 6(3):e00381-15. David LA, Weil A, Ryan ET, Calderwood SB, Harris JB, Chowdhury F, Begum Y, Qadri F, LaRocque RC, Turnbaugh PJ. PMID: 25991682; PMCID: PMC4442136.
      View in: PubMed   Mentions: 90     Fields:    Translation:HumansCells
    78. Characterization and detection of a widely distributed gene cluster that predicts anaerobic choline utilization by human gut bacteria. mBio. 2015 Apr 14; 6(2). Martínez-del Campo A, Bodea S, Hamer HA, Marks JA, Haiser HJ, Turnbaugh PJ, Balskus EP. PMID: 25873372; PMCID: PMC4453576.
      View in: PubMed   Mentions: 91     Fields:    Translation:HumansCells
    79. Dietary Polyphenols Promote Growth of the Gut Bacterium Akkermansia muciniphila and Attenuate High-Fat Diet-Induced Metabolic Syndrome. Diabetes. 2015 Aug; 64(8):2847-58. Roopchand DE, Carmody RN, Kuhn P, Moskal K, Rojas-Silva P, Turnbaugh PJ, Raskin I. PMID: 25845659; PMCID: PMC4512228.
      View in: PubMed   Mentions: 218     Fields:    Translation:AnimalsCells
    80. Functional characterization of bacteria isolated from ancient arctic soil exposes diverse resistance mechanisms to modern antibiotics. PLoS One. 2015; 10(3):e0069533. Perron GG, Whyte L, Turnbaugh PJ, Goordial J, Hanage WP, Dantas G, Desai MM. PMID: 25807523; PMCID: PMC4373940.
      View in: PubMed   Mentions: 72     Fields:    Translation:CellsPHPublic Health
    81. Diet dominates host genotype in shaping the murine gut microbiota. Cell Host Microbe. 2015 Jan 14; 17(1):72-84. Carmody RN, Gerber GK, Luevano JM, Gatti DM, Somes L, Svenson KL, Turnbaugh PJ. PMID: 25532804; PMCID: PMC4297240.
      View in: PubMed   Mentions: 458     Fields:    Translation:Animals
    82. Human microbiome science: vision for the future, Bethesda, MD, July 24 to 26, 2013. Microbiome. 2014 Dec 1; 2(1):16. Ravel RJ, Blaser BM, Braun BJ, Brown BE, Bushman BF, Chang CE, Davies DJ, Dewey DK, Dinan DT, Dominguez-Bello DM, Erdman ES, Finlay FB, Garrett GW, Huffnagle HG, Huttenhower HC, Jansson JJ, Jeffery JI, Jobin JC, Khoruts KA, Kong KH, Lampe LJ, Ley LR, Littman LD, Mazmanian MS, Mills MD, Neish NA, Petrof PE, Relman RD, Rhodes RR, Turnbaugh TP, Young YV, Knight KR, White WO. .
      View in: Publisher Site   Mentions:
    83. Rapid fucosylation of intestinal epithelium sustains host-commensal symbiosis in sickness. Nature. 2014 Oct 30; 514(7524):638-41. Pickard JM, Maurice CF, Kinnebrew MA, Abt MC, Schenten D, Golovkina TV, Bogatyrev SR, Ismagilov RF, Pamer EG, Turnbaugh PJ, Chervonsky AV. PMID: 25274297; PMCID: PMC4214913.
      View in: PubMed   Mentions: 235     Fields:    Translation:AnimalsCells
    84. Microbial determinants of biochemical individuality and their impact on toxicology and pharmacology. Cell Metab. 2014 Nov 04; 20(5):761-768. Patterson AD, Turnbaugh PJ. PMID: 25156450; PMCID: PMC4252706.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansAnimals
    85. Host-microbial interactions in the metabolism of therapeutic and diet-derived xenobiotics. J Clin Invest. 2014 Oct; 124(10):4173-81. Carmody RN, Turnbaugh PJ. PMID: 25105361; PMCID: PMC4191041.
      View in: PubMed   Mentions: 111     Fields:    Translation:HumansAnimalsCells
    86. The intestinal metabolome: an intersection between microbiota and host. Gastroenterology. 2014 May; 146(6):1470-6. Ursell LK, Haiser HJ, Van Treuren W, Garg N, Reddivari L, Vanamala J, Dorrestein PC, Turnbaugh PJ, Knight R. PMID: 24631493; PMCID: PMC4102302.
      View in: PubMed   Mentions: 108     Fields:    Translation:HumansAnimalsCells
    87. Mechanistic insight into digoxin inactivation by Eggerthella lenta augments our understanding of its pharmacokinetics. Gut Microbes. 2014 Mar-Apr; 5(2):233-8. Haiser HJ, Seim KL, Balskus EP, Turnbaugh PJ. PMID: 24637603; PMCID: PMC4063850.
      View in: PubMed   Mentions: 61     Fields:    Translation:HumansAnimalsCells
    88. Diet rapidly and reproducibly alters the human gut microbiome. Nature. 2014 Jan 23; 505(7484):559-63. David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, Ling AV, Devlin AS, Varma Y, Fischbach MA, Biddinger SB, Dutton RJ, Turnbaugh PJ. PMID: 24336217; PMCID: PMC3957428.
      View in: PubMed   Mentions: 3627     Fields:    Translation:HumansCellsPHPublic HealthCTClinical Trials
    89. High-resolution microbial community reconstruction by integrating short reads from multiple 16S rRNA regions. Nucleic Acids Res. 2013 Dec; 41(22):e205. Amir A, Zeisel A, Zuk O, Elgart M, Stern S, Shamir O, Turnbaugh PJ, Soen Y, Shental N. PMID: 24214960; PMCID: PMC3905898.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    90. Predicting and manipulating cardiac drug inactivation by the human gut bacterium Eggerthella lenta. Science. 2013 Jul 19; 341(6143):295-8. Haiser HJ, Gootenberg DB, Chatman K, Sirasani G, Balskus EP, Turnbaugh PJ. PMID: 23869020; PMCID: PMC3736355.
      View in: PubMed   Mentions: 265     Fields:    Translation:HumansAnimalsCells
    91. Cancer: An acidic link. Nature. 2013 Jul 04; 499(7456):37-8. Devkota S, Turnbaugh PJ. PMID: 23803768.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    92. Quantifying the metabolic activities of human-associated microbial communities across multiple ecological scales. FEMS Microbiol Rev. 2013 Sep; 37(5):830-48. Maurice CF, Turnbaugh PJ. PMID: 23550823; PMCID: PMC3729610.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimals
    93. Translating the human microbiome. Nat Biotechnol. 2013 Apr; 31(4):304-8. Brown J, de Vos WM, DiStefano PS, Doré J, Huttenhower C, Knight R, Lawley TD, Raes J, Turnbaugh P. PMID: 23563424.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimals
    94. Conserved shifts in the gut microbiota due to gastric bypass reduce host weight and adiposity. Sci Transl Med. 2013 Mar 27; 5(178):178ra41. Liou AP, Paziuk M, Luevano JM, Machineni S, Turnbaugh PJ, Kaplan LM. PMID: 23536013; PMCID: PMC3652229.
      View in: PubMed   Mentions: 429     Fields:    Translation:Animals
    95. Xenobiotics shape the physiology and gene expression of the active human gut microbiome. Cell. 2013 Jan 17; 152(1-2):39-50. Maurice CF, Haiser HJ, Turnbaugh PJ. PMID: 23332745; PMCID: PMC3552296.
      View in: PubMed   Mentions: 350     Fields:    Translation:HumansCells
    96. Quantifying and identifying the active and damaged subsets of indigenous microbial communities. Methods Enzymol. 2013; 531:91-107. Maurice CF, Turnbaugh PJ. PMID: 24060117.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    97. Antibiotic exposure promotes fat gain. Cell Metab. 2012 Oct 03; 16(4):408-10. Liou AP, Turnbaugh PJ. PMID: 23040064; PMCID: PMC3494989.
      View in: PubMed   Mentions: 2     Fields:    
    98. Gut microbes make for fattier fish. Cell Host Microbe. 2012 Sep 13; 12(3):259-61. Carmody RN, Turnbaugh PJ. PMID: 22980321; PMCID: PMC3888188.
      View in: PubMed   Mentions: 4     Fields:    
    99. Taking a metagenomic view of human nutrition. Curr Opin Clin Nutr Metab Care. 2012 Sep; 15(5):448-54. Dutton RJ, Turnbaugh PJ. PMID: 22878238.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimalsPHPublic Health
    100. Developing a metagenomic view of xenobiotic metabolism. Pharmacol Res. 2013 Mar; 69(1):21-31. Haiser HJ, Turnbaugh PJ. PMID: 22902524; PMCID: PMC3526672.
      View in: PubMed   Mentions: 67     Fields:    Translation:HumansAnimals
    101. Microbiology: fat, bile and gut microbes. Nature. 2012 Jul 04; 487(7405):47-8. Turnbaugh PJ. PMID: 22763552.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    102. Is it time for a metagenomic basis of therapeutics? Science. 2012 Jun 08; 336(6086):1253-5. Haiser HJ, Turnbaugh PJ. PMID: 22674325.
      View in: PubMed   Mentions: 57     Fields:    Translation:HumansAnimalsCells
    103. 515 Weight-Independent Changes in Gut Microbial Ecology Regulate Adiposity Following Roux-en-Y Gastric Bypass Surgery in Mice. Gastroenterology. 2012 May 1; 142(5):s-108. Liou LA, Luevano LJ, Turnbaugh TP, Kaplan KL. .
      View in: Publisher Site   Mentions:
    104. Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease. Proc Natl Acad Sci U S A. 2012 Jan 10; 109(2):594-9. Greenblum S, Turnbaugh PJ, Borenstein E. PMID: 22184244; PMCID: PMC3258644.
      View in: PubMed   Mentions: 338     Fields:    Translation:Humans
    105. Detecting novel associations in large data sets. Science. 2011 Dec 16; 334(6062):1518-24. Reshef DN, Reshef YA, Finucane HK, Grossman SR, McVean G, Turnbaugh PJ, Lander ES, Mitzenmacher M, Sabeti PC. PMID: 22174245; PMCID: PMC3325791.
      View in: PubMed   Mentions: 437     Fields:    Translation:HumansAnimals
    106. Wild immunology: converging on the real world. Ann N Y Acad Sci. 2011 Oct; 1236:17-29. Babayan SA, Allen JE, Bradley JE, Geuking MB, Graham AL, Grencis RK, Kaufman J, McCoy KD, Paterson S, Smith KG, Turnbaugh PJ, Viney ME, Maizels RM, Pedersen AB. PMID: 22032399.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimals
    107. Human health and disease in a microbial world. Front Microbiol. 2011; 2:190. Turnbaugh PJ, Stintzi A. PMID: 21954396; PMCID: PMC3174398.
      View in: PubMed   Mentions: 7  
    108. Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans. Am J Clin Nutr. 2011 Jul; 94(1):58-65. Jumpertz R, Le DS, Turnbaugh PJ, Trinidad C, Bogardus C, Gordon JI, Krakoff J. PMID: 21543530; PMCID: PMC3127503.
      View in: PubMed   Mentions: 472     Fields:    Translation:HumansCellsCTClinical Trials
    109. Companion animals symposium: microbes and health. J Anim Sci. 2011 May; 89(5):1496-7. Swanson KS, Suchodolski JS, Turnbaugh PJ. PMID: 21521817.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    110. Taxonomic metagenome sequence assignment with structured output models. Nat Methods. 2011 Mar; 8(3):191-2. Patil KR, Haider P, Pope PB, Turnbaugh PJ, Morrison M, Scheffer T, McHardy AC. PMID: 21358620; PMCID: PMC3131843.
      View in: PubMed   Mentions: 66     Fields:    Translation:Cells
    111. Removing noise from pyrosequenced amplicons. BMC Bioinformatics. 2011 Jan 28; 12:38. Quince C, Lanzen A, Davenport RJ, Turnbaugh PJ. PMID: 21276213; PMCID: PMC3045300.
      View in: PubMed   Mentions: 611     Fields:    
    112. The mind-body-microbial continuum. Dialogues Clin Neurosci. 2011; 13(1):55-62. Gonzalez A, Stombaugh J, Lozupone C, Turnbaugh PJ, Gordon JI, Knight R. PMID: 21485746; PMCID: PMC3139398.
      View in: PubMed   Mentions: 49     Fields:    Translation:Humans
    113. Companion animals symposium: humanized animal models of the microbiome. J Anim Sci. 2011 May; 89(5):1531-7. Gootenberg DB, Turnbaugh PJ. PMID: 20833767.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansAnimals
    114. A microbe-dependent viral key to Crohn's box. Sci Transl Med. 2010 Aug 04; 2(43):43ps39. Peterson DA, Turnbaugh PJ. PMID: 20686177.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    115. Viewing the human microbiome through three-dimensional glasses: integrating structural and functional studies to better define the properties of myriad carbohydrate-active enzymes. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 01; 66(Pt 10):1261-4. Turnbaugh PJ, Henrissat B, Gordon JI. PMID: 20944220; PMCID: PMC2954214.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    116. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci U S A. 2011 Mar 15; 108 Suppl 1:4516-22. Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R. PMID: 20534432; PMCID: PMC3063599.
      View in: PubMed   Mentions: 2974     Fields:    Translation:Cells
    117. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010 May; 7(5):335-6. Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. PMID: 20383131; PMCID: PMC3156573.
      View in: PubMed   Mentions: 13274     Fields:    Translation:HumansAnimals
    118. Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proc Natl Acad Sci U S A. 2010 Apr 20; 107(16):7503-8. Turnbaugh PJ, Quince C, Faith JJ, McHardy AC, Yatsunenko T, Niazi F, Affourtit J, Egholm M, Henrissat B, Knight R, Gordon JI. PMID: 20363958; PMCID: PMC2867707.
      View in: PubMed   Mentions: 233     Fields:    Translation:HumansCells
    119. The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med. 2009 Nov 11; 1(6):6ra14. Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI. PMID: 20368178; PMCID: PMC2894525.
      View in: PubMed   Mentions: 1297     Fields:    Translation:HumansAnimalsCells
    120. The core gut microbiome, energy balance and obesity. J Physiol. 2009 Sep 01; 587(Pt 17):4153-8. Turnbaugh PJ, Gordon JI. PMID: 19491241; PMCID: PMC2754355.
      View in: PubMed   Mentions: 437     Fields:    Translation:HumansAnimals
    121. Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. Proc Natl Acad Sci U S A. 2009 Apr 07; 106(14):5859-64. Mahowald MA, Rey FE, Seedorf H, Turnbaugh PJ, Fulton RS, Wollam A, Shah N, Wang C, Magrini V, Wilson RK, Cantarel BL, Coutinho PM, Henrissat B, Crock LW, Russell A, Verberkmoes NC, Hettich RL, Gordon JI. PMID: 19321416; PMCID: PMC2660063.
      View in: PubMed   Mentions: 285     Fields:    Translation:HumansAnimalsCells
    122. A core gut microbiome in obese and lean twins. Nature. 2009 Jan 22; 457(7228):480-4. Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI. PMID: 19043404; PMCID: PMC2677729.
      View in: PubMed   Mentions: 3344     Fields:    Translation:Humans
    123. An invitation to the marriage of metagenomics and metabolomics. Cell. 2008 Sep 05; 134(5):708-13. Turnbaugh PJ, Gordon JI. PMID: 18775300.
      View in: PubMed   Mentions: 85     Fields:    Translation:Humans
    124. Evolution of mammals and their gut microbes. Science. 2008 Jun 20; 320(5883):1647-51. Ley RE, Hamady M, Lozupone C, Turnbaugh PJ, Ramey RR, Bircher JS, Schlegel ML, Tucker TA, Schrenzel MD, Knight R, Gordon JI. PMID: 18497261; PMCID: PMC2649005.
      View in: PubMed   Mentions: 1461     Fields:    Translation:HumansAnimalsCells
    125. Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host Microbe. 2008 Apr 17; 3(4):213-23. Turnbaugh PJ, Bäckhed F, Fulton L, Gordon JI. PMID: 18407065; PMCID: PMC3687783.
      View in: PubMed   Mentions: 1253     Fields:    Translation:AnimalsCells
    126. Host-bacterial coevolution and the search for new drug targets. Curr Opin Chem Biol. 2008 Feb; 12(1):109-14. Zaneveld J, Turnbaugh PJ, Lozupone C, Ley RE, Hamady M, Gordon JI, Knight R. PMID: 18280814; PMCID: PMC2348432.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansAnimals
    127. The human microbiome project. Nature. 2007 Oct 18; 449(7164):804-10. Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. PMID: 17943116; PMCID: PMC3709439.
      View in: PubMed   Mentions: 2068     Fields:    Translation:HumansAnimals
    128. Microbial ecology: human gut microbes associated with obesity. Nature. 2006 Dec 21; 444(7122):1022-3. Ley RE, Turnbaugh PJ, Klein S, Gordon JI. PMID: 17183309.
      View in: PubMed   Mentions: 3387     Fields:    Translation:HumansAnimalsCellsCTClinical Trials
    129. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature. 2006 Dec 21; 444(7122):1027-31. Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI. PMID: 17183312.
      View in: PubMed   Mentions: 4668     Fields:    Translation:AnimalsCells
    130. Metagenomic analysis of the human distal gut microbiome. Science. 2006 Jun 02; 312(5778):1355-9. Gill SR, Pop M, Deboy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Gordon JI, Relman DA, Fraser-Liggett CM, Nelson KE. PMID: 16741115; PMCID: PMC3027896.
      View in: PubMed   Mentions: 1720     Fields:    Translation:HumansCells
    131. Discovery, validation, and genetic dissection of transcription factor binding sites by comparative and functional genomics. Genome Res. 2005 Aug; 15(8):1145-52. Gertz J, Riles L, Turnbaugh P, Ho SW, Cohen BA. PMID: 16077013; PMCID: PMC1182227.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    132. Obesity alters gut microbial ecology. Proc Natl Acad Sci U S A. 2005 Aug 02; 102(31):11070-5. Ley RE, Bäckhed F, Turnbaugh P, Lozupone CA, Knight RD, Gordon JI. PMID: 16033867; PMCID: PMC1176910.
      View in: PubMed   Mentions: 2388     Fields:    Translation:HumansAnimalsCells
    With one click, see people who:

    Mentor Faculty

    Offer Student Projects

    Run Clinical Trials

    Work in Global Health Equity

    See more options in the Advanced Search tab

    Peter's Networks
    Concepts (435)
    Derived automatically from this person's publications.
    Explore
    _
    Co-Authors (71)
    People in Profiles who have published with this person.
    Explore
    _
    Similar People (60)
    People who share similar concepts with this person.
    Explore
    _
    Same Department
    Search Department
    _

    UCSF Profiles is managed by the UCSF Clinical and Translational Science Institute (CTSI), part of the Clinical and Translational Science Award program funded by the National Center for Advancing Translational Sciences (Grant Number UL1 TR000004) at the National Institutes of Health (NIH).

    We use cookies to operate our website. We also use cookies to analyze our site’s performance and improve your experience on our site. For more information about how we use cookies, please see our Website Terms of Use. This site is running Profiles RNS version UCSF-v3.1.0-2-gbbe5f151 on PROFILES-PWEB03.

    Copyright © The Regents of the University of California.