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High-volume hybridoma sequencing on the NeuroMabSeq platform enables efficient generation of recombinant monoclonal antibodies and scFvs for neuroscience research. Sci Rep. 2023 09 27; 13(1):16200.
Mitchell KG, Gong B, Hunter SS, Burkart-Waco D, Gavira-O'Neill CE, Templeton KM, Goethel ME, Bzymek M, MacNiven LM, Murray KD, Settles ML, Froenicke L, Trimmer JS. PMID: 37758930; PMCID: PMC10533561.
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PubMed Mentions:
2 Fields:
Translation:
AnimalsCells
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NeuroMabSeq: high volume acquisition, processing, and curation of hybridoma sequences and their use in generating recombinant monoclonal antibodies and scFvs for neuroscience research. bioRxiv. 2023 Jun 30.
Mitchell KG, Gong B, Hunter SS, Burkart-Waco D, Gavira-O'Neill CE, Templeton KM, Goethel ME, Bzymek M, MacNiven LM, Murray KD, Settles ML, Froenicke L, Trimmer JS. PMID: 37425915; PMCID: PMC10327083.
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PubMed Mentions:
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Human soft tissue sarcomas harbor an intratumoral viral microbiome which is linked with natural killer cell infiltrate and prognosis. J Immunother Cancer. 2023 01; 11(1).
Perry LM, Cruz SM, Kleber KT, Judge SJ, Darrow MA, Jones LB, Basmaci UN, Joshi N, Settles ML, Durbin-Johnson BP, Gingrich AA, Monjazeb AM, Carr-Ascher J, Thorpe SW, Murphy WJ, Eisen JA, Canter RJ. PMID: 36599469; PMCID: PMC9815021.
View in:
PubMed Mentions:
9 Fields:
Translation:
HumansCells
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Workshop-based learning and networking: a scalable model for research capacity strengthening in low- and middle-income countries. Glob Health Action. 2022 12 31; 15(1):2062175.
Perier C, Nasinghe E, Charles I, Ssetaba LJ, Ahyong V, Bangs D, Beatty PR, Czudnochowski N, Diallo A, Dugan E, Fabius JM, Fong Baker H, Gardner J, Isaacs S, Joanah B, Kalantar K, Kateete D, Knight M, Krasilnikov M, Krogan NJ, Langelier C, Lee E, Li LM, Licht D, Lien K, Lyons Z, Mboowa G, Mwebaza I, Mwesigwa S, Nalwadda G, Nichols R, Penaranda ME, Petnic S, Phelps M, Popper SJ, Rape M, Reingold A, Robbins R, Rosenberg OS, Savage DF, Schildhauer S, Settles ML, Sserwadda I, Stanley S, Tato CM, Tsitsiklis A, Van Dis E, Vanaerschot M, Vinden J, Cox JS, Joloba ML, Schaletzky J. PMID: 35730550; PMCID: PMC9225690.
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PubMed Mentions: Fields:
Translation:
HumansPHPublic Health
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Biofilms preserve the transmissibility of a multi-drug resistance plasmid. NPJ Biofilms Microbiomes. 2022 12 09; 8(1):95.
Metzger GA, Ridenhour BJ, France M, Gliniewicz K, Millstein J, Settles ML, Forney LJ, Stalder T, Top EM. PMID: 36481746; PMCID: PMC9732292.
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PubMed Mentions:
8 Fields:
-
A two-stage digestion of whole murine knee joints for single-cell RNA sequencing. Osteoarthr Cartil Open. 2022 Dec; 4(4):100321.
Leale DM, Li L, Settles ML, Mitchell K, Froenicke L, Yik JHN, Haudenschild DR. PMID: 36474787; PMCID: PMC9718180.
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PubMed Mentions:
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Comparative Transcriptional Analyses in the Nucleus Accumbens Identifies RGS2 as a Key Mediator of Depression-Related Behavior. Biol Psychiatry. 2022 12 15; 92(12):942-951.
Williams AV, Peña CJ, Ramos-Maciel S, Laman-Maharg A, Ordoñez-Sanchez E, Britton M, Durbin-Johnson B, Settles M, Hao R, Yokoyama S, Xu C, Luo PX, Dwyer T, Bhela S, Black AM, Labonté B, Serafini RA, Ruiz A, Neve RL, Zachariou V, Nestler EJ, Trainor BC. PMID: 36075764; PMCID: PMC9794384.
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PubMed Mentions:
6 Fields:
Translation:
Animals
-
Effects of pairing on color change and central gene expression in lined seahorses. Genes Brain Behav. 2022 06; 21(5):e12812.
Mederos SL, Duarte RC, Mastoras M, Dennis MY, Settles ML, Lau AR, Scott A, Woodward K, Johnson C, Seelke AMH, Bales KL. PMID: 35652318; PMCID: PMC9744553.
View in:
PubMed Mentions:
4 Fields:
Translation:
HumansAnimals
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Sex disparate gut microbiome and metabolome perturbations precede disease progression in a mouse model of Rett syndrome. Commun Biol. 2021 12 16; 4(1):1408.
Neier K, Grant TE, Palmer RL, Chappell D, Hakam SM, Yasui KM, Rolston M, Settles ML, Hunter SS, Madany A, Ashwood P, Durbin-Johnson B, LaSalle JM, Yasui DH. PMID: 34916612; PMCID: PMC8677842.
View in:
PubMed Mentions:
6 Translation:
Animals
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Dual transcriptomic analysis reveals metabolic changes associated with differential persistence of human pathogenic bacteria in leaves of Arabidopsis and lettuce. G3 (Bethesda). 2021 Dec 08; 11(12).
Jacob C, Velásquez AC, Josh NA, Settles M, He SY, Melotto M. PMID: 34550367; PMCID: PMC8664426.
View in:
PubMed Mentions:
4 Fields:
Translation:
HumansAnimalsCells
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Establishment of quantitative RNAi-based forward genetics in Entamoeba histolytica and identification of genes required for growth. PLoS Pathog. 2021 11; 17(11):e1010088.
Bettadapur A, Hunter SS, Suleiman RL, Ruyechan MC, Huang W, Barbieri CG, Miller HW, Tam TSY, Settles ML, Ralston KS. PMID: 34843592; PMCID: PMC8716031.
View in:
PubMed Mentions:
2 Fields:
Translation:
Animals
-
Protective heterologous T cell immunity in COVID-19 induced by the trivalent MMR and Tdap vaccine antigens. Med. 2021 09 10; 2(9):1050-1071.e7.
Mysore V, Cullere X, Settles ML, Ji X, Kattan MW, Desjardins M, Durbin-Johnson B, Gilboa T, Baden LR, Walt DR, Lichtman AH, Jehi L, Mayadas TN. PMID: 34414383; PMCID: PMC8363466.
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PubMed Mentions:
27 Fields:
Translation:
HumansCells
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Diversification, Introgression, and Rampant Cytonuclear Discordance in Rocky Mountains Chipmunks (Sciuridae: Tamias). Syst Biol. 2021 08 11; 70(5):908-921.
Sarver BAJ, Herrera ND, Sneddon D, Hunter SS, Settles ML, Kronenberg Z, Demboski JR, Good JM, Sullivan J. PMID: 33410870; PMCID: PMC8786503.
View in:
PubMed Mentions:
10 Fields:
Translation:
HumansAnimals
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Inhibition of MET Signaling with Ficlatuzumab in Combination with Chemotherapy in Refractory AML: Clinical Outcomes and High-Dimensional Analysis. Blood Cancer Discov. 2021 09; 2(5):434-449.
Wang VE, Blaser BW, Patel RK, Behbehani GK, Rao AA, Durbin-Johnson B, Jiang T, Logan AC, Settles M, Mannis GN, Olin R, Damon LE, Martin TG, Sayre PH, Gaensler KM, McMahon E, Flanders M, Weinberg V, Ye CJ, Carbone DP, Munster PN, Fragiadakis GK, McCormick F, Andreadis C. PMID: 34514432; PMCID: PMC8425277.
View in:
PubMed Mentions:
4 Fields:
Translation:
Humans
-
Wilson Disease: Intersecting DNA Methylation and Histone Acetylation Regulation of Gene Expression in a Mouse Model of Hepatic Copper Accumulation. Cell Mol Gastroenterol Hepatol. 2021; 12(4):1457-1477.
Sarode GV, Neier K, Shibata NM, Shen Y, Goncharov DA, Goncharova EA, Mazi TA, Joshi N, Settles ML, LaSalle JM, Medici V. PMID: 34098115; PMCID: PMC8487080.
View in:
PubMed Mentions:
4 Fields:
Translation:
HumansAnimalsCells
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The auxin-producing Bacillus thuringiensis RZ2MS9 promotes the growth and modifies the root architecture of tomato (Solanum lycopersicum cv. Micro-Tom). Arch Microbiol. 2021 Sep; 203(7):3869-3882.
Batista BD, Dourado MN, Figueredo EF, Hortencio RO, Marques JPR, Piotto FA, Bonatelli ML, Settles ML, Azevedo JL, Quecine MC. PMID: 34013419.
View in:
PubMed Mentions:
24 Fields:
Translation:
AnimalsCells
-
Protective heterologous T cell immunity in COVID-19 induced by MMR and Tdap vaccine antigens. bioRxiv. 2021 May 04.
Mysore V, Cullere X, Settles ML, Ji X, Kattan MW, Desjardins M, Durbin-Johnson B, Gilboa T, Baden LR, Walt DR, Lichtman A, Jehi L, Mayadas TN. PMID: 33972940; PMCID: PMC8109200.
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PubMed Mentions:
-
Disruption of global hypothalamic microRNA (miR) profiles and associated behavioral changes in California mice (Peromyscus californicus) developmentally exposed to endocrine disrupting chemicals. Horm Behav. 2021 02; 128:104890.
Kaur S, Kinkade JA, Green MT, Martin RE, Willemse TE, Bivens NJ, Schenk AK, Helferich WG, Trainor BC, Fass J, Settles M, Mao J, Rosenfeld CS. PMID: 33221288; PMCID: PMC7897400.
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PubMed Mentions:
12 Fields:
Translation:
Animals
-
Chromatin accessibility in canine stromal cells and its implications for canine somatic cell reprogramming. Stem Cells Transl Med. 2020 Nov 16.
Questa M, Moshref M, Jimenez RJ, Lopez-Cervantes V, Crawford CK, Settles ML, Ross PJ, Kol A. PMID: 33210453; PMCID: PMC7900587.
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PubMed Mentions:
3 Fields:
-
Association of the Lactase Persistence Haplotype Block With Disease Risk in Populations of European Descent. Front Genet. 2020; 11:558762.
Joslin SEK, Durbin-Johnson BP, Britton M, Settles ML, Korf I, Lemay DG. PMID: 33193640; PMCID: PMC7658388.
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PubMed Mentions:
1
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Transcriptomic response to elevated water temperatures in adult migrating Yukon River Chinook salmon (Oncorhynchus tshawytscha). Conserv Physiol. 2020; 8(1):coaa084.
Bowen L, von Biela VR, McCormick SD, Regish AM, Waters SC, Durbin-Johnson B, Britton M, Settles ML, Donnelly DS, Laske SM, Carey MP, Brown RJ, Zimmerman CE. PMID: 34512988; PMCID: PMC7486460.
View in:
PubMed Mentions:
6
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MYBPC3 Haplotype Linked to Hypertrophic Cardiomyopathy in Rhesus Macaques (Macaca mulatta). Comp Med. 2020 10 01; 70(5):358-367.
Oldt RF, Bussey KJ, Settles ML, Fass JN, Roberts JA, Reader JR, Komandoor S, Abrich VA, Kanthaswamy S. PMID: 32753092; PMCID: PMC7574221.
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PubMed Mentions: Fields:
Translation:
HumansAnimals
-
Complete Genome Sequence of Bacillus sp. Strain RZ2MS9, a Multitrait Plant Growth Promoter. Microbiol Resour Announc. 2020 Jul 30; 9(31).
Bonatelli ML, Li J, Dumaresq A, Quecine MC, Settles ML. PMID: 32732234; PMCID: PMC7393963.
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PubMed Mentions:
1
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Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis Facilities. J Biomol Tech. 2020 07; 31(2):66-73.
Dragon JA, Gates C, Sui SH, Hutchinson JN, Karuturi RKM, Kucukural A, Polson S, Riva A, Settles ML, Thimmapuram J, Levine SS. PMID: 32382253; PMCID: PMC7192196.
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PubMed Mentions:
3 Fields:
Translation:
Humans
-
Proximal femoral head transcriptome reveals novel candidate genes related to epiphysiolysis in broiler chickens. BMC Genomics. 2019 Dec 30; 20(1):1031.
de Oliveira Peixoto J, Savoldi IR, Ibelli AMG, Cantão ME, Jaenisch FRF, Giachetto PF, Settles ML, Zanella R, Marchesi JAP, Pandolfi JR, Coutinho LL, Ledur MC. PMID: 31888477; PMCID: PMC6937697.
View in:
PubMed Mentions:
8 Fields:
Translation:
AnimalsCells
-
Rectal Microbiome Composition Correlates with Humoral Immunity to HIV-1 in Vaccinated Rhesus Macaques. mSphere. 2019 12 11; 4(6).
Elizaldi SR, Verma A, Walter KA, Rolston M, Dinasarapu AR, Durbin-Johnson BP, Settles M, Kozlowski PA, Raeman R, Iyer SS. PMID: 31826975; PMCID: PMC6908426.
View in:
PubMed Mentions:
12 Fields:
Translation:
AnimalsCells
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Single-Cell RNA-seq Reveals Profound Alterations in Mechanosensitive Dorsal Root Ganglion Neurons with Vitamin E Deficiency. iScience. 2019 Nov 22; 21:720-735.
Finno CJ, Peterson J, Kang M, Park S, Bordbari MH, Durbin-Johnson B, Settles M, Perez-Flores MC, Lee JH, Yamoah EN. PMID: 31733517; PMCID: PMC6864320.
View in:
PubMed Mentions:
9
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Additional Evidence for DDB2 T338M as a Genetic Risk Factor for Ocular Squamous Cell Carcinoma in Horses. Int J Genomics. 2019; 2019:3610965.
Singer-Berk MH, Knickelbein KE, Lounsberry ZT, Crausaz M, Vig S, Joshi N, Britton M, Settles ML, Reilly CM, Bentley E, Nunnery C, Dwyer A, Lassaline ME, Bellone RR. PMID: 31637255; PMCID: PMC6766160.
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PubMed Mentions:
3
-
Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform. mSystems. 2019 Jan-Feb; 4(1).
Holm JB, Humphrys MS, Robinson CK, Settles ML, Ott S, Fu L, Yang H, Gajer P, He X, McComb E, Gravitt PE, Ghanem KG, Brotman RM, Ravel J. PMID: 30801027; PMCID: PMC6381223.
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PubMed Mentions:
69 Fields:
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Transcriptome Analysis of Salmonella Heidelberg after Exposure to Cetylpyridinium Chloride, Acidified Calcium Hypochlorite, and Peroxyacetic Acid. J Food Prot. 2019 01; 82(1):109-119.
Cadena M, Froenicke L, Britton M, Settles ML, Durbin-Johnson B, Kumimoto E, Gallardo RA, Ferreiro A, Chylkova T, Zhou H, Pitesky M. PMID: 30702951.
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PubMed Mentions:
5 Fields:
Translation:
AnimalsCellsPHPublic Health
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Fatherhood alters gene expression within the MPOA. Environ Epigenet. 2018 Oct; 4(4):dvy026.
Seelke AMH, Bond JM, Simmons TC, Joshi N, Settles ML, Stolzenberg D, Rhemtulla M, Bales KL. PMID: 30568805; PMCID: PMC6305489.
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PubMed Mentions:
6
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Obesity treatment by epigallocatechin-3-gallate-regulated bile acid signaling and its enriched Akkermansia muciniphila. FASEB J. 2018 Jun 08; fj201800370R.
Sheng L, Jena PK, Liu HX, Hu Y, Nagar N, Bronner DN, Settles ML, Bäumler AJ, Wan YY. PMID: 29882708; PMCID: PMC6219838.
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PubMed Mentions:
48 Fields:
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High-Quality Complete Genome Sequences of Three Bovine Shiga Toxin-Producing Escherichia coli O177:H- (fliCH25) Isolates Harboring Virulent stx2 and Multiple Plasmids. Genome Announc. 2018 Feb 15; 6(7).
Sheng H, Duan M, Hunter SS, Minnich SA, Settles ML, New DD, Chase JR, Fagnan MW, Hovde CJ. PMID: 29449403; PMCID: PMC5814490.
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PubMed Mentions:
3
-
16S rRNA analysis of diversity of manure microbial community in dairy farm environment. PLoS One. 2018; 13(1):e0190126.
Pandey P, Chiu C, Miao M, Wang Y, Settles M, Del Rio NS, Castillo A, Souza A, Pereira R, Jeannotte R. PMID: 29304047; PMCID: PMC5755784.
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PubMed Mentions:
18 Fields:
Translation:
Animals
-
Human Milk Microbial Community Structure Is Relatively Stable and Related to Variations in Macronutrient and Micronutrient Intakes in Healthy Lactating Women. J Nutr. 2017 09; 147(9):1739-1748.
Williams JE, Carrothers JM, Lackey KA, Beatty NF, York MA, Brooker SL, Shafii B, Price WJ, Settles ML, McGuire MA, McGuire MK. PMID: 28724659; PMCID: PMC5572491.
View in:
PubMed Mentions:
73 Fields:
Translation:
HumansCells
-
Unlocking the story in the swab: A new genotyping assay for the amphibian chytrid fungus Batrachochytrium dendrobatidis. Mol Ecol Resour. 2017 Nov; 17(6):1283-1292.
Byrne AQ, Rothstein AP, Poorten TJ, Erens J, Settles ML, Rosenblum EB. PMID: 28371384.
View in:
PubMed Mentions:
14 Fields:
Translation:
Animals
-
Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP). J Biomol Tech. 2017 04; 28(1):31-39.
Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S, Stewart Johnson S, Baldwin DA, Bivens N, Ajami N, Carmical JR, Herriott IC, Colwell R, Donia M, Foox J, Greenfield N, Hunter T, Hoffman J, Hyman J, Jorgensen E, Krawczyk D, Lee J, Levy S, Garcia-Reyero N, Settles M, Thomas K, Gómez F, Schriml L, Kyrpides N, Zaikova E, Penterman J, Mason CE. PMID: 28337070; PMCID: PMC5345951.
View in:
PubMed Mentions:
28 Fields:
Translation:
PHPublic Health
-
Erratum to: Small RNAs from a Big Genome: The piRNA Pathway and Transposable Elements in the Salamander Species Desmognathus fuscus. J Mol Evol. 2017 01; 84(1):67.
Madison-Villar MJ, Sun C, Lau NC, Settles ML, Mueller RL. PMID: 27909757.
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PubMed Mentions:
1 Fields:
-
Small RNAs from a Big Genome: The piRNA Pathway and Transposable Elements in the Salamander Species Desmognathus fuscus. J Mol Evol. 2016 Oct; 83(3-4):126-136.
Madison-Villar MJ, Sun C, Lau NC, Settles ML, Mueller RL. PMID: 27743003.
View in:
PubMed Mentions:
7 Fields:
Translation:
AnimalsCells
-
Love the one you're with: replicate viral adaptations converge on the same phenotypic change. PeerJ. 2016; 4:e2227.
Miller CR, Nagel AC, Scott L, Settles M, Joyce P, Wichman HA. PMID: 27547540; PMCID: PMC4958007.
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PubMed Mentions:
5 Fields:
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A Phylogenomic Approach Based on PCR Target Enrichment and High Throughput Sequencing: Resolving the Diversity within the South American Species of Bartsia L. (Orobanchaceae). PLoS One. 2016; 11(2):e0148203.
Uribe-Convers S, Settles ML, Tank DC. PMID: 26828929; PMCID: PMC4734709.
View in:
PubMed Mentions:
27 Fields:
Translation:
AnimalsCells
-
Mitochondrial Genome Sequence of the Galápagos Endemic Land Snail Naesiotus nux. Genome Announc. 2016 Jan 21; 4(1).
Hunter SS, Settles ML, New DD, Parent CE, Gerritsen AT. PMID: 26798085; PMCID: PMC4722252.
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PubMed Mentions:
4
-
Full Mitochondrial Genome Sequence of the Sugar Beet Wireworm Limonius californicus (Coleoptera: Elateridae), a Common Agricultural Pest. Genome Announc. 2016 Jan 21; 4(1).
Gerritsen AT, New DD, Robison BD, Rashed A, Hohenlohe P, Forney L, Rashidi M, Wilson CM, Settles ML. PMID: 26798113; PMCID: PMC4722280.
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PubMed Mentions:
5
-
Evolutionary Paths That Expand Plasmid Host-Range: Implications for Spread of Antibiotic Resistance. Mol Biol Evol. 2016 Apr; 33(4):885-97.
Loftie-Eaton W, Yano H, Burleigh S, Simmons RS, Hughes JM, Rogers LM, Hunter SS, Settles ML, Forney LJ, Ponciano JM, Top EM. PMID: 26668183; PMCID: PMC4840908.
View in:
PubMed Mentions:
57 Fields:
Translation:
HumansCells
-
The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards. Mol Ecol. 2016 01; 25(1):306-23.
Laurent S, Pfeifer SP, Settles ML, Hunter SS, Hardwick KM, Ormond L, Sousa VC, Jensen JD, Rosenblum EB. PMID: 26363411.
View in:
PubMed Mentions:
19 Fields:
Translation:
Animals
-
Fecal Microbial Community Structure Is Stable over Time and Related to Variation in Macronutrient and Micronutrient Intakes in Lactating Women. J Nutr. 2015 Oct; 145(10):2379-88.
Carrothers JM, York MA, Brooker SL, Lackey KA, Williams JE, Shafii B, Price WJ, Settles ML, McGuire MA, McGuire MK. PMID: 26311809; PMCID: PMC4580954.
View in:
PubMed Mentions:
36 Fields:
Translation:
Humans
-
Draft Genome Sequence of Pseudomonas sp. nov. H2. Genome Announc. 2015 Apr 02; 3(2).
Loftie-Eaton W, Suzuki H, Bashford K, Heuer H, Stragier P, De Vos P, Settles ML, Top EM. PMID: 25838493; PMCID: PMC4384497.
View in:
PubMed Mentions:
1
-
Vaginal microbiota of adolescent girls prior to the onset of menarche resemble those of reproductive-age women. mBio. 2015 Mar 24; 6(2).
Hickey RJ, Zhou X, Settles ML, Erb J, Malone K, Hansmann MA, Shew ML, Van Der Pol B, Fortenberry JD, Forney LJ. PMID: 25805726; PMCID: PMC4453513.
View in:
PubMed Mentions:
75 Fields:
Translation:
HumansCells
-
Fine-scale analysis of 16S rRNA sequences reveals a high level of taxonomic diversity among vaginal Atopobium spp. Pathog Dis. 2015 Jun; 73(4).
Mendes-Soares H, Krishnan V, Settles ML, Ravel J, Brown CJ, Forney LJ. PMID: 25778779; PMCID: PMC4542641.
View in:
PubMed Mentions:
7 Fields:
Translation:
HumansCells
-
Elevated dairy fat intake in lactating women alters milk lipid and fatty acids without detectible changes in expression of genes related to lipid uptake or synthesis. Nutr Res. 2015 Mar; 35(3):221-8.
Yahvah KM, Brooker SL, Williams JE, Settles M, McGuire MA, McGuire MK. PMID: 25661476.
View in:
PubMed Mentions:
12 Fields:
Translation:
HumansCells
-
Comparative analysis of microbial community of novel lactic acid fermentation inoculated with different undefined mixed cultures. Bioresour Technol. 2015 Mar; 179:268-274.
Liang S, Gliniewicz K, Mendes-Soares H, Settles ML, Forney LJ, Coats ER, McDonald AG. PMID: 25545096.
View in:
PubMed Mentions:
7 Fields:
Translation:
CellsPHPublic Health
-
Influence of organic loading rate and solid retention time on polyhydroxybutyrate production from hybrid poplar hydrolysates using mixed microbial cultures. Bioresour Technol. 2015 Jan; 175:23-33.
Dai J, Gliniewicz K, Settles ML, Coats ER, McDonald AG. PMID: 25459800.
View in:
PubMed Mentions:
6 Fields:
Translation:
AnimalsCells
-
Prenatal exposure to BPA alters the epigenome of the rat mammary gland and increases the propensity to neoplastic development. PLoS One. 2014; 9(7):e99800.
Dhimolea E, Wadia PR, Murray TJ, Settles ML, Treitman JD, Sonnenschein C, Shioda T, Soto AM. PMID: 24988533; PMCID: PMC4079328.
View in:
PubMed Mentions:
46 Fields:
Translation:
AnimalsCells
-
Vaginal microbiome changes with levonorgestrel intrauterine system placement. Contraception. 2014 Aug; 90(2):130-5.
Jacobson JC, Turok DK, Dermish AI, Nygaard IE, Settles ML. PMID: 24835828.
View in:
PubMed Mentions:
17 Fields:
Translation:
HumansCellsCTClinical Trials
-
Phase variation in Myxococcus xanthus yields cells specialized for iron sequestration. PLoS One. 2014; 9(4):e95189.
Dziewanowska K, Settles M, Hunter S, Linquist I, Schilkey F, Hartzell PL. PMID: 24733297; PMCID: PMC3986340.
View in:
PubMed Mentions:
7 Fields:
Translation:
Cells
-
Maternal bisphenol a exposure impacts the fetal heart transcriptome. PLoS One. 2014; 9(2):e89096.
Chapalamadugu KC, Vandevoort CA, Settles ML, Robison BD, Murdoch GK. PMID: 24586524; PMCID: PMC3934879.
View in:
PubMed Mentions:
24 Fields:
Translation:
AnimalsCellsPHPublic Health
-
Draft Genome Sequence of Pseudomonas moraviensis R28-S. Genome Announc. 2014 Feb 20; 2(1).
Hunter SS, Yano H, Loftie-Eaton W, Hughes J, De Gelder L, Stragier P, De Vos P, Settles ML, Top EM. PMID: 24558233; PMCID: PMC3931354.
View in:
PubMed Mentions:
7
-
Microbiota of the seminal fluid from healthy and infertile men. Fertil Steril. 2013 Nov; 100(5):1261-9.
Hou D, Zhou X, Zhong X, Settles ML, Herring J, Wang L, Abdo Z, Forney LJ, Xu C. PMID: 23993888; PMCID: PMC3888793.
View in:
PubMed Mentions:
96 Fields:
Translation:
HumansCells
-
SlopMap: a software application tool for quick and flexible identification of similar sequences using exact k-mer matching. J Data Mining Genomics Proteomics. 2013 Aug 01; 4(3).
Zhbannikov IY, Hunter SS, Settles ML, Foster JA. PMID: 24404406; PMCID: PMC3882202.
View in:
PubMed Mentions:
3
-
Sex-specific transcriptional responses of the zebrafish (Danio rerio) brain selenoproteome to acute sodium selenite supplementation. Physiol Genomics. 2013 Aug 01; 45(15):653-66.
Benner MJ, Settles ML, Murdoch GK, Hardy RW, Robison BD. PMID: 23737534; PMCID: PMC3742966.
View in:
PubMed Mentions:
5 Fields:
Translation:
Animals
-
MasABK proteins interact with proteins of the type IV pilin system to affect social motility of Myxococcus xanthus. PLoS One. 2013; 8(1):e54557.
Fremgen S, Williams A, Furusawa G, Dziewanowska K, Settles M, Hartzell P. PMID: 23342171; PMCID: PMC3546991.
View in:
PubMed Mentions:
1 Fields:
Translation:
Cells
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A forward genetic screen reveals that calcium-dependent protein kinase 3 regulates egress in Toxoplasma. PLoS Pathog. 2012; 8(11):e1003049.
Garrison E, Treeck M, Ehret E, Butz H, Garbuz T, Oswald BP, Settles M, Boothroyd J, Arrizabalaga G. PMID: 23209419; PMCID: PMC3510250.
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PubMed Mentions:
76 Fields:
Translation:
Animals
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Substrate-specific gene expression in Batrachochytrium dendrobatidis, the chytrid pathogen of amphibians. PLoS One. 2012; 7(11):e49924.
Rosenblum EB, Poorten TJ, Joneson S, Settles M. PMID: 23185485; PMCID: PMC3502224.
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PubMed Mentions:
22 Fields:
Translation:
Animals
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Epigenetic transgenerational inheritance of vinclozolin induced mouse adult onset disease and associated sperm epigenome biomarkers. Reprod Toxicol. 2012 Dec; 34(4):694-707.
Guerrero-Bosagna C, Covert TR, Haque MM, Settles M, Nilsson EE, Anway MD, Skinner MK. PMID: 23041264; PMCID: PMC3513496.
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PubMed Mentions:
120 Fields:
Translation:
AnimalsCells
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An improved algorithm for the detection of genomic variation using short oligonucleotide expression microarrays. Mol Ecol Resour. 2012 Nov; 12(6):1079-89.
Settles ML, Coram T, Soule T, Robison BD. PMID: 22966828; PMCID: PMC3470765.
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PubMed Mentions: Fields:
Translation:
Animals
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Brain transcriptome variation among behaviorally distinct strains of zebrafish (Danio rerio). BMC Genomics. 2012 Jul 20; 13:323.
Drew RE, Settles ML, Churchill EJ, Williams SM, Balli S, Robison BD. PMID: 22817472; PMCID: PMC3434030.
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PubMed Mentions:
25 Fields:
Translation:
HumansAnimalsCells
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The role of clonal interference in the evolutionary dynamics of plasmid-host adaptation. mBio. 2012; 3(4):e00077-12.
Hughes JM, Lohman BK, Deckert GE, Nichols EP, Settles M, Abdo Z, Top EM. PMID: 22761390; PMCID: PMC3398533.
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PubMed Mentions:
20 Fields:
Translation:
Cells
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mcaGUI: microbial community analysis R-Graphical User Interface (GUI). Bioinformatics. 2012 Aug 15; 28(16):2198-9.
Copeland WK, Krishnan V, Beck D, Settles M, Foster JA, Cho KC, Day M, Hickey R, Schütte UM, Zhou X, Williams CJ, Forney LJ, Abdo Z. PMID: 22692220; PMCID: PMC3413388.
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PubMed Mentions:
4 Fields:
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Meta-analysis of two genome-wide association studies of bovine paratuberculosis. PLoS One. 2012; 7(3):e32578.
Minozzi G, Williams JL, Stella A, Strozzi F, Luini M, Settles ML, Taylor JF, Whitlock RH, Zanella R, Neibergs HL. PMID: 22396781; PMCID: PMC3292576.
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PubMed Mentions:
29 Fields:
Translation:
Animals
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Only skin deep: shared genetic response to the deadly chytrid fungus in susceptible frog species. Mol Ecol. 2012 Jul; 21(13):3110-20.
Rosenblum EB, Poorten TJ, Settles M, Murdoch GK. PMID: 22332717.
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PubMed Mentions:
40 Fields:
Translation:
AnimalsCells
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Experimental sink removal induces stress responses, including shifts in amino acid and phenylpropanoid metabolism, in soybean leaves. Planta. 2012 May; 235(5):939-54.
Turner GW, Cuthbertson DJ, Voo SS, Settles ML, Grimes HD, Lange BM. PMID: 22109846; PMCID: PMC3551543.
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PubMed Mentions:
2 Fields:
Translation:
AnimalsCells
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Genome-wide scan identifies loci associated with classical BSE occurrence. PLoS One. 2011; 6(11):e26819.
Murdoch BM, Murdoch GK, Settles M, McKay S, Williams JL, Moore SS. PMID: 22073200; PMCID: PMC3208576.
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PubMed Mentions:
6 Fields:
Translation:
HumansAnimals
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Global analysis of phase variation in Myxococcus xanthus. Mol Microbiol. 2011 Aug; 81(3):784-804.
Furusawa G, Dziewanowska K, Stone H, Settles M, Hartzell P. PMID: 21722202; PMCID: PMC3192537.
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PubMed Mentions:
11 Fields:
Translation:
Cells
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OTUbase: an R infrastructure package for operational taxonomic unit data. Bioinformatics. 2011 Jun 15; 27(12):1700-1.
Beck D, Settles M, Foster JA. PMID: 21498398; PMCID: PMC3106189.
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PubMed Mentions:
7 Fields:
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Epigenetic transgenerational actions of vinclozolin on promoter regions of the sperm epigenome. PLoS One. 2010 Sep 30; 5(9).
Guerrero-Bosagna C, Settles M, Lucker B, Skinner MK. PMID: 20927350; PMCID: PMC2948035.
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PubMed Mentions:
201 Fields:
Translation:
AnimalsCells
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PRNP haplotype associated with classical BSE incidence in European Holstein cattle. PLoS One. 2010 Sep 16; 5(9).
Murdoch BM, Clawson ML, Yue S, Basu U, McKay S, Settles M, Capoferri R, Laegreid WW, Williams JL, Moore SS. PMID: 20862290; PMCID: PMC2940907.
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PubMed Mentions:
8 Fields:
Translation:
AnimalsCells
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GSEA-SNP identifies genes associated with Johne's disease in cattle. Mamm Genome. 2010 Aug; 21(7-8):419-25.
Neibergs HL, Settles ML, Whitlock RH, Taylor JF. PMID: 20706723.
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PubMed Mentions:
16 Fields:
Translation:
AnimalsCells
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Alterations in the developing testis transcriptome following embryonic vinclozolin exposure. Reprod Toxicol. 2010 Nov; 30(3):353-64.
Clement TM, Savenkova MI, Settles M, Anway MD, Skinner MK. PMID: 20566332; PMCID: PMC2944409.
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PubMed Mentions:
13 Fields:
Translation:
Animals
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A 2cM genome-wide scan of European Holstein cattle affected by classical BSE. BMC Genet. 2010 Mar 29; 11:20.
Murdoch BM, Clawson ML, Laegreid WW, Stothard P, Settles M, McKay S, Prasad A, Wang Z, Moore SS, Williams JL. PMID: 20350325; PMCID: PMC2853485.
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PubMed Mentions:
9 Fields:
Translation:
AnimalsCells
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Meta-analysis of transcripts associated with race-specific resistance to stripe rust in wheat demonstrates common induction of blue copper-binding protein, heat-stress transcription factor, pathogen-induced WIR1A protein, and ent-kaurene synthase transcripts. Funct Integr Genomics. 2010 Aug; 10(3):383-92.
Coram TE, Huang X, Zhan G, Settles ML, Chen X. PMID: 19937262.
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PubMed Mentions:
24 Fields:
Translation:
Animals
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Genome-wide transcriptional response of Silurana (Xenopus) tropicalis to infection with the deadly chytrid fungus. PLoS One. 2009 Aug 04; 4(8):e6494.
Rosenblum EB, Poorten TJ, Settles M, Murdoch GK, Robert J, Maddox N, Eisen MB. PMID: 19701481; PMCID: PMC2727658.
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PubMed Mentions:
43 Fields:
Translation:
AnimalsCells
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Large-scale analysis of antisense transcription in wheat using the Affymetrix GeneChip Wheat Genome Array. BMC Genomics. 2009 May 29; 10:253.
Coram TE, Settles ML, Chen X. PMID: 19480707; PMCID: PMC2694213.
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PubMed Mentions:
21 Fields:
Translation:
AnimalsCells
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Effect of starvation on transcriptomes of brain and liver in adult female zebrafish (Danio rerio). Physiol Genomics. 2008 Nov 12; 35(3):283-95.
Drew RE, Rodnick KJ, Settles M, Wacyk J, Churchill E, Powell MS, Hardy RW, Murdoch GK, Hill RA, Robison BD. PMID: 18728227; PMCID: PMC2585019.
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PubMed Mentions:
43 Fields:
Translation:
AnimalsCells
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Transcriptome analysis of high-temperature adult-plant resistance conditioned by Yr39 during the wheat-Puccinia striiformis f. sp. tritici interaction. Mol Plant Pathol. 2008 Jul; 9(4):479-93.
Coram TE, Settles ML, Chen X. PMID: 18705862; PMCID: PMC6640281.
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PubMed Mentions:
40 Fields:
Translation:
Animals
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Surveying expression level polymorphism and single-feature polymorphism in near-isogenic wheat lines differing for the Yr5 stripe rust resistance locus. Theor Appl Genet. 2008 Aug; 117(3):401-11.
Coram TE, Settles ML, Wang M, Chen X. PMID: 18470504.
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PubMed Mentions:
12 Fields:
Translation:
AnimalsCells
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Sexual dimorphism in hepatic gene expression and the response to dietary carbohydrate manipulation in the zebrafish (Danio rerio). Comp Biochem Physiol Part D Genomics Proteomics. 2008 Jun; 3(2):141-54.
Robison BD, Drew RE, Murdoch GK, Powell M, Rodnick KJ, Settles M, Stone D, Churchill E, Hill RA, Papasani MR, Lewis SS, Hardy RW. PMID: 20483215; PMCID: PMC3047473.
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PubMed Mentions:
31 Fields: