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Gabriela Fragiadakis, PhD

Title(s)Assistant Professor, Medicine
SchoolSchool of Medicine
Address533 Parnassus Avenue
San Francisco CA 94117
Phone--
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Long-term dietary intervention reveals resilience of the gut microbiota despite changes in diet and weight. Am J Clin Nutr. 2020 06 01; 111(6):1127-1136. Fragiadakis GK, Wastyk HC, Robinson JL, Sonnenburg ED, Sonnenburg JL, Gardner CD. PMID: 32186326.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    2. FLOW-MAP: a graph-based, force-directed layout algorithm for trajectory mapping in single-cell time course datasets. Nat Protoc. 2020 02; 15(2):398-420. Ko ME, Williams CM, Fread KI, Goggin SM, Rustagi RS, Fragiadakis GK, Nolan GP, Zunder ER. PMID: 31932774.
      View in: PubMed   Mentions:    Fields:    
    3. Sex Differences in the Blood Transcriptome Identify Robust Changes in Immune Cell Proportions with Aging and Influenza Infection. Cell Rep. 2019 11 12; 29(7):1961-1973.e4. Bongen E, Lucian H, Khatri A, Fragiadakis GK, Bjornson ZB, Nolan GP, Utz PJ, Khatri P. PMID: 31722210.
      View in: PubMed   Mentions:    Fields:    
    4. Pursuing Human-Relevant Gut Microbiota-Immune Interactions. Immunity. 2019 08 20; 51(2):225-239. Spencer SP, Fragiadakis GK, Sonnenburg JL. PMID: 31433970.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimals
    5. GateFinder: projection-based gating strategy optimization for flow and mass cytometry. Bioinformatics. 2018 12 01; 34(23):4131-4133. Aghaeepour N, Simonds EF, Knapp DJHF, Bruggner RV, Sachs K, Culos A, Gherardini PF, Samusik N, Fragiadakis GK, Bendall SC, Gaudilliere B, Angst MS, Eaves CJ, Weiss WA, Fantl WJ, Nolan GP. PMID: 29850785.
      View in: PubMed   Mentions: 5     Fields:    
    6. Gut microbiome transition across a lifestyle gradient in Himalaya. PLoS Biol. 2018 11; 16(11):e2005396. Jha AR, Davenport ER, Gautam Y, Bhandari D, Tandukar S, Ng KM, Fragiadakis GK, Holmes S, Gautam GP, Leach J, Sherchand JB, Bustamante CD, Sonnenburg JL. PMID: 30439937.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    7. Links between environment, diet, and the hunter-gatherer microbiome. Gut Microbes. 2019; 10(2):216-227. Fragiadakis GK, Smits SA, Sonnenburg ED, Van Treuren W, Reid G, Knight R, Manjurano A, Changalucha J, Dominguez-Bello MG, Leach J, Sonnenburg JL. PMID: 30118385.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsPHPublic Health
    8. Multicenter Systems Analysis of Human Blood Reveals Immature Neutrophils in Males and During Pregnancy. J Immunol. 2017 03 15; 198(6):2479-2488. Blazkova J, Gupta S, Liu Y, Gaudilliere B, Ganio EA, Bolen CR, Saar-Dover R, Fragiadakis GK, Angst MS, Hasni S, Aghaeepour N, Stevenson D, Baldwin N, Anguiano E, Chaussabel D, Altman MC, Kaplan MJ, Davis MM, Furman D. PMID: 28179497.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    9. Expression of specific inflammasome gene modules stratifies older individuals into two extreme clinical and immunological states. Nat Med. 2017 Feb; 23(2):174-184. Furman D, Chang J, Lartigue L, Bolen CR, Haddad F, Gaudilliere B, Ganio EA, Fragiadakis GK, Spitzer MH, Douchet I, Daburon S, Moreau JF, Nolan GP, Blanco P, Déchanet-Merville J, Dekker CL, Jojic V, Kuo CJ, Davis MM, Faustin B. PMID: 28092664.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansAnimalsCells
    10. Mapping the Fetomaternal Peripheral Immune System at Term Pregnancy. J Immunol. 2016 12 01; 197(11):4482-4492. Fragiadakis GK, Baca QJ, Gherardini PF, Ganio EA, Gaudilliere DK, Tingle M, Lancero HL, McNeil LS, Spitzer MH, Wong RJ, Shaw GM, Darmstadt GL, Sylvester KG, Winn VD, Carvalho B, Lewis DB, Stevenson DK, Nolan GP, Aghaeepour N, Angst MS, Gaudilliere BL. PMID: 27793998.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    11. Biosynthesis and Regulation of Sulfomenaquinone, a Metabolite Associated with Virulence in Mycobacterium tuberculosis. ACS Infect Dis. 2016 11 11; 2(11):800-806. Sogi KM, Holsclaw CM, Fragiadakis GK, Nomura DK, Leary JA, Bertozzi CR. PMID: 27933784.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    12. In Reply. Anesthesiology. 2016 06; 124(6):1414-5. Angst MS, Fragiadakis GK, Gaudillière B, Aghaeepour N, Nolan GP. PMID: 27187126.
      View in: PubMed   Mentions:    Fields:    
    13. Patient-specific Immune States before Surgery Are Strong Correlates of Surgical Recovery. Anesthesiology. 2015 Dec; 123(6):1241-55. Fragiadakis GK, Gaudillière B, Ganio EA, Aghaeepour N, Tingle M, Nolan GP, Angst MS. PMID: 26655308.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    14. The effect of microbial colonization on the host proteome varies by gastrointestinal location. ISME J. 2016 May; 10(5):1170-81. Lichtman JS, Alsentzer E, Jaffe M, Sprockett D, Masutani E, Ikwa E, Fragiadakis GK, Clifford D, Huang BE, Sonnenburg JL, Huang KC, Elias JE. PMID: 26574685.
      View in: PubMed   Mentions: 9     Fields:    Translation:Animals
    15. Implementing Mass Cytometry at the Bedside to Study the Immunological Basis of Human Diseases: Distinctive Immune Features in Patients with a History of Term or Preterm Birth. Cytometry A. 2015 Sep; 87(9):817-29. Gaudillière B, Ganio EA, Tingle M, Lancero HL, Fragiadakis GK, Baca QJ, Aghaeepour N, Wong RJ, Quaintance C, El-Sayed YY, Shaw GM, Lewis DB, Stevenson DK, Nolan GP, Angst MS. PMID: 26190063.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    16. IMMUNOLOGY. An interactive reference framework for modeling a dynamic immune system. Science. 2015 Jul 10; 349(6244):1259425. Spitzer MH, Gherardini PF, Fragiadakis GK, Bhattacharya N, Yuan RT, Hotson AN, Finck R, Carmi Y, Zunder ER, Fantl WJ, Bendall SC, Engleman EG, Nolan GP. PMID: 26160952.
      View in: PubMed   Mentions: 54     Fields:    Translation:HumansAnimals
    17. Transient partial permeabilization with saponin enables cellular barcoding prior to surface marker staining. Cytometry A. 2014 Dec; 85(12):1011-9. Behbehani GK, Thom C, Zunder ER, Finck R, Gaudilliere B, Fragiadakis GK, Fantl WJ, Nolan GP. PMID: 25274027.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    18. Clinical recovery from surgery correlates with single-cell immune signatures. Sci Transl Med. 2014 Sep 24; 6(255):255ra131. Gaudillière B, Fragiadakis GK, Bruggner RV, Nicolau M, Finck R, Tingle M, Silva J, Ganio EA, Yeh CG, Maloney WJ, Huddleston JI, Goodman SB, Davis MM, Bendall SC, Fantl WJ, Angst MS, Nolan GP. PMID: 25253674.
      View in: PubMed   Mentions: 74     Fields:    Translation:HumansCells
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