Ravi Patel, PhD

Title(s)Sr. Bio. Data Scientist, Vice Chanc Research
SchoolChancellor/EVC/FAS
Address513 Parnassus Avenue, MSB, #824
San Francisco CA 94117
Phone--
ORCID ORCID Icon0000-0001-5203-899X Additional info
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    Collapse Biography 
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    Cornell University, Ithaca, NYPhD01/2020Genetics, Genomics & Development

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis. Nat Commun. 2024 Feb 19; 15(1):1493. Mennillo E, Kim YJ, Lee G, Rusu I, Patel RK, Dorman LC, Flynn E, Li S, Bain JL, Andersen C, Rao A, Tamaki S, Tsui J, Shen A, Lotstein ML, Rahim M, Naser M, Bernard-Vazquez F, Eckalbar W, Cho SJ, Beck K, El-Nachef N, Lewin S, Selvig DR, Terdiman JP, Mahadevan U, Oh DY, Fragiadakis GK, Pisco A, Combes AJ, Kattah MG. PMID: 38374043; PMCID: PMC10876948.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    2. Cyclone: an accessible pipeline to analyze, evaluate, and optimize multiparametric cytometry data. Front Immunol. 2023; 14:1167241. Patel RK, Jaszczak RG, Im K, Carey ND, Courau T, Bunis DG, Samad B, Avanesyan L, Chew NW, Stenske S, Jespersen JM, Publicover J, Edwards AW, Naser M, Rao AA, Lupin-Jimenez L, Krummel MF, Cooper S, Baron JL, Combes AJ, Fragiadakis GK. PMID: 37731497; PMCID: PMC10507399.
      View in: PubMed   Mentions: 2     Fields:    
    3. Distinct pulmonary and systemic effects of dexamethasone in severe COVID-19. Res Sq. 2023 Aug 03. Neyton LPA, Patel RK, Sarma A, UCSF COMET Consortium, Willmore A, Haller SC, Kangelaris KN, Eckalbar WL, Erle DJ, Krummel MF, Hendrickson CM, Woodruff PG, Langelier CR, Calfee CS, Fragiadakis GK. PMID: 37577607; PMCID: PMC10418533.
      View in: PubMed   Mentions:
    4. Inhibition of MET Signaling with Ficlatuzumab in Combination with Chemotherapy in Refractory AML: Clinical Outcomes and High-Dimensional Analysis. Blood Cancer Discov. 2021 09; 2(5):434-449. Wang VE, Blaser BW, Patel RK, Behbehani GK, Rao AA, Durbin-Johnson B, Jiang T, Logan AC, Settles M, Mannis GN, Olin R, Damon LE, Martin TG, Sayre PH, Gaensler KM, McMahon E, Flanders M, Weinberg V, Ye CJ, Carbone DP, Munster PN, Fragiadakis GK, McCormick F, Andreadis C. PMID: 34514432; PMCID: PMC8425277.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    5. Robust partitioning of microRNA targets from downstream regulatory changes. Nucleic Acids Res. 2020 09 25; 48(17):9724-9746. Patel RK, West JD, Jiang Y, Fogarty EA, Grimson A. PMID: 32821933; PMCID: PMC7515711.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    6. CDK2 kinase activity is a regulator of male germ cell fate. Development. 2019 11 06; 146(21). Singh P, Patel RK, Palmer N, Grenier JK, Paduch D, Kaldis P, Grimson A, Schimenti JC. PMID: 31582414; PMCID: PMC6857589.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    7. The Notch signaling pathway promotes basophil responses during helminth-induced type 2 inflammation. J Exp Med. 2019 06 03; 216(6):1268-1279. Webb LM, Oyesola OO, Früh SP, Kamynina E, Still KM, Patel RK, Peng SA, Cubitt RL, Grimson A, Grenier JK, Harris TH, Danko CG, Tait Wojno ED. PMID: 30975892; PMCID: PMC6547860.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    8. MiR-146a wild-type 3' sequence identity is dispensable for proper innate immune function in vivo. Life Sci Alliance. 2019 02; 2(1). Bertolet G, Kongchan N, Miller R, Patel RK, Jain A, Choi JM, Saltzman AB, Christenson A, Jung SY, Malovannaya A, Grimson A, Neilson JR. PMID: 30777858; PMCID: PMC6379685.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    9. Developmental Origin Governs CD8+ T Cell Fate Decisions during Infection. Cell. 2018 06 28; 174(1):117-130.e14. Smith NL, Patel RK, Reynaldi A, Grenier JK, Wang J, Watson NB, Nzingha K, Yee Mon KJ, Peng SA, Grimson A, Davenport MP, Rudd BD. PMID: 29909981.
      View in: PubMed   Mentions: 87     Fields:    Translation:AnimalsCells
    10. Reproductive Long Intergenic Noncoding RNAs Exhibit Male Gamete Specificity and Polycomb Repressive Complex 2-Mediated Repression. Plant Physiol. 2018 07; 177(3):1198-1217. Johnson C, Conrad LJ, Patel R, Anderson S, Li C, Pereira A, Sundaresan V. PMID: 29844229; PMCID: PMC6053002.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    11. Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq). Nat Protoc. 2016 08; 11(8):1455-76. Mahat DB, Kwak H, Booth GT, Jonkers IH, Danko CG, Patel RK, Waters CT, Munson K, Core LJ, Lis JT. PMID: 27442863; PMCID: PMC5502525.
      View in: PubMed   Mentions: 221     Fields:    Translation:HumansAnimalsCells
    12. A widespread sequence-specific mRNA decay pathway mediated by hnRNPs A1 and A2/B1. Genes Dev. 2016 05 01; 30(9):1070-85. Geissler R, Simkin A, Floss D, Patel R, Fogarty EA, Scheller J, Grimson A. PMID: 27151978; PMCID: PMC4863738.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimalsCells
    13. CTDB: An Integrated Chickpea Transcriptome Database for Functional and Applied Genomics. PLoS One. 2015; 10(8):e0136880. Verma M, Kumar V, Patel RK, Garg R, Jain M. PMID: 26322998; PMCID: PMC4556341.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    14. A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.). Plant J. 2013 Jun; 74(5):715-29. Jain M, Misra G, Patel RK, Priya P, Jhanwar S, Khan AW, Shah N, Singh VK, Garg R, Jeena G, Yadav M, Kant C, Sharma P, Yadav G, Bhatia S, Tyagi AK, Chattopadhyay D. PMID: 23489434.
      View in: PubMed   Mentions: 168     Fields:    Translation:AnimalsCells
    15. NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PLoS One. 2012; 7(2):e30619. Patel RK, Jain M. PMID: 22312429; PMCID: PMC3270013.
      View in: PubMed   Mentions: 1378     Fields:    Translation:Cells
    16. PlantRGS: a web server for the identification of most suitable candidate reference genes for quantitative gene expression studies in plants. DNA Res. 2011 Dec; 18(6):463-70. Patel RK, Jain M. PMID: 21987088; PMCID: PMC3223078.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    17. Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development. Plant Physiol. 2011 Aug; 156(4):1661-78. Garg R, Patel RK, Jhanwar S, Priya P, Bhattacharjee A, Yadav G, Bhatia S, Chattopadhyay D, Tyagi AK, Jain M. PMID: 21653784; PMCID: PMC3149962.
      View in: PubMed   Mentions: 114     Fields:    Translation:AnimalsCells
    18. De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification. DNA Res. 2011 Feb; 18(1):53-63. Garg R, Patel RK, Tyagi AK, Jain M. PMID: 21217129; PMCID: PMC3041503.
      View in: PubMed   Mentions: 221     Fields:    Translation:AnimalsCells
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