 Sam Perli, PhD
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| Title(s) | Postdoctoral Scholar, Gladstone Institutes |
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| School | School of Medicine |
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| vCard | Download vCard |
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 Biography | Massachusetts Institute of Technology, Cambridge, MA | PhD | 06/2015 | Molecular Biology | | Massachusetts Institute of Technology, Cambridge, MA | SM | 05/2010 | Computer Science | | Indian Institute of Technology Madras, Chennai, India | B. Tech | 06/2008 | Electrical Engineering |
| 2015 | | Dmitris N. Chorafas award for outstanding PhD thesis | | MIT | 2013
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| 2014 | Thomas and Sarah Kailath Fellowship | | MIT | 2011
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| 2012 | Thomas and Sarah Kailath Fellowship | | 2010
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| 2013 | Harvey Fellowship | | MIT | 2008
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| 2009 | MIT Presidential Fellowship | | IIT Madras | 2008 | | Siemens Prize for best academic record | | IIT Madras | 2008 | | Institute Silver Medal |
Overview I am a postdoctoral fellow working with Prof. Shinya Yamanaka at Gladstone Institutes and UCSF on developing computational and molecular tools for dissecting and engineering Biology as well as developing next generation applications of pluripotent stem cells. I have previously worked with Prof. Timothy Lu @ MIT, where I obtained my PhD. Prior to that, I earned a Masters degree in Computer Science from MIT working with Prof. Dina Katabi as a Presidential Fellow and finished my Bachelor's degree in Electrical Engineering @ IIT Madras and was awarded an Institute medal
ORNG Applications Bibliographic
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Samuel D. Perli and Timothy K. Lu.Ratiometric logic in living cells via competitive binding of synthetic transcription
factors, ACM NanoCom. 2017.
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Samuel D. Perli, Timothy K. Lu.Analog synthetic gene networks, ACM NanoCom. 2016.
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Perli SD, Cui CH, Lu TK. Continuous genetic recording with self-targeting CRISPR-Cas in human cells. Science. 2016 09 09; 353(6304). PMID: 27540006.
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Ma KC, Perli SD, Lu TK. Foundations and Emerging Paradigms for Computing in Living Cells. J Mol Biol. 2016 Feb 27; 428(5 Pt B):893-915. PMID: 26908220.
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Wong AS, Choi GC, Cui CH, Pregernig G, Milani P, Adam M, Perli SD, Kazer SW, Gaillard A, Hermann M, Shalek AK, Fraenkel E, Lu TK. Multiplexed barcoded CRISPR-Cas9 screening enabled by CombiGEM. Proc Natl Acad Sci U S A. 2016 Mar 01; 113(9):2544-9. PMID: 26864203; PMCID: PMC4780610.
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Nissim L, Perli SD, Fridkin A, Perez-Pinera P, Lu TK. Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells. Mol Cell. 2014 May 22; 54(4):698-710. PMID: 24837679; PMCID: PMC4077618.
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Farzadfard F, Perli SD, Lu TK. Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas. ACS Synth Biol. 2013 Oct 18; 2(10):604-13. PMID: 23977949; PMCID: PMC3805333.
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Kristjan E. Kaseniit, Samuel D. Perli and Timothy K. Lu.Designing extensible protein-DNA interactions for synthetic biology, BioCAS. 2011.
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Samuel David Perli, Nabeel Ahmed and Dina Katabi.PixNet : LCD-Camera pairs as communication links, ACM SIGCOMM. 2010; 40(4):451-452.
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Samuel David Perli, Nabeel Ahmed and Dina Katabi.PixNet: interference-free wireless links using LCD-camera pairs, ACM MobiCom. 2010; 137-148.
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Shyamnath Gollakota, Samuel D. Perli and Dina katabi.Interference Alignment and Cancellation, ACM SIGCOMM. 2009.
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P. Samuel David and Anurag Kumar.Network Coding for TCP Throughput Enhancement over a Multi-Hop Wireless
Network, IEEE COMSWARE. 2008.
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