Sam Perli, PhD

Title(s)Postdoctoral Scholar, Gladstone Institutes
SchoolSchool of Medicine
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    Collapse Biography 
    Collapse Education and Training
    Massachusetts Institute of Technology, Cambridge, MAPhD06/2015Molecular Biology
    Massachusetts Institute of Technology, Cambridge, MASM05/2010Computer Science
    Indian Institute of Technology Madras, Chennai, IndiaB. Tech06/2008Electrical Engineering
    Collapse Awards and Honors
    2015Dmitris N. Chorafas award for outstanding PhD thesis
    MIT2013  - 2014Thomas and Sarah Kailath Fellowship
    MIT2011  - 2012Thomas and Sarah Kailath Fellowship
    2010  - 2013Harvey Fellowship
    MIT2008  - 2009MIT Presidential Fellowship
    IIT Madras2008Siemens Prize for best academic record
    IIT Madras2008Institute Silver Medal

    Collapse Overview 
    Collapse Overview
    I am a postdoctoral fellow working with Prof. Shinya Yamanaka at Gladstone Institutes and UCSF on developing computational and molecular tools for dissecting and engineering Biology as well as developing next generation applications of pluripotent stem cells. I have previously worked with Prof. Timothy Lu @ MIT, where I obtained my PhD. Prior to that, I earned a Masters degree in Computer Science from MIT working with Prof. Dina Katabi as a Presidential Fellow and finished my Bachelor's degree in Electrical Engineering @ IIT Madras and was awarded an Institute medal

    Collapse ORNG Applications 
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    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
    List All   |   Timeline
    1. Samuel D. Perli and Timothy K. Lu.Ratiometric logic in living cells via competitive binding of synthetic transcription factors, ACM NanoCom. 2017.
    2. Samuel D. Perli, Timothy K. Lu.Analog synthetic gene networks, ACM NanoCom. 2016.
    3. Perli SD, Cui CH, Lu TK. Continuous genetic recording with self-targeting CRISPR-Cas in human cells. Science. 2016 09 09; 353(6304). PMID: 27540006.
      View in: PubMed
    4. Ma KC, Perli SD, Lu TK. Foundations and Emerging Paradigms for Computing in Living Cells. J Mol Biol. 2016 Feb 27; 428(5 Pt B):893-915. PMID: 26908220.
      View in: PubMed
    5. Wong AS, Choi GC, Cui CH, Pregernig G, Milani P, Adam M, Perli SD, Kazer SW, Gaillard A, Hermann M, Shalek AK, Fraenkel E, Lu TK. Multiplexed barcoded CRISPR-Cas9 screening enabled by CombiGEM. Proc Natl Acad Sci U S A. 2016 Mar 01; 113(9):2544-9. PMID: 26864203; PMCID: PMC4780610.
    6. Nissim L, Perli SD, Fridkin A, Perez-Pinera P, Lu TK. Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells. Mol Cell. 2014 May 22; 54(4):698-710. PMID: 24837679; PMCID: PMC4077618.
    7. Farzadfard F, Perli SD, Lu TK. Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas. ACS Synth Biol. 2013 Oct 18; 2(10):604-13. PMID: 23977949; PMCID: PMC3805333.
    8. Kristjan E. Kaseniit, Samuel D. Perli and Timothy K. Lu.Designing extensible protein-DNA interactions for synthetic biology, BioCAS. 2011.
    9. Samuel David Perli, Nabeel Ahmed and Dina Katabi.PixNet : LCD-Camera pairs as communication links, ACM SIGCOMM. 2010; 40(4):451-452.
    10. Samuel David Perli, Nabeel Ahmed and Dina Katabi.PixNet: interference-free wireless links using LCD-camera pairs, ACM MobiCom. 2010; 137-148.
    11. Shyamnath Gollakota, Samuel D. Perli and Dina katabi.Interference Alignment and Cancellation, ACM SIGCOMM. 2009.
    12. P. Samuel David and Anurag Kumar.Network Coding for TCP Throughput Enhancement over a Multi-Hop Wireless Network, IEEE COMSWARE. 2008.