Sam Perli, PhD

Title(s)Postdoctoral Scholar, Gladstone Institutes
SchoolSchool of Medicine
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    Collapse Biography 
    Collapse Education and Training
    Massachusetts Institute of Technology, Cambridge, MAPhD06/2015Molecular Biology
    Massachusetts Institute of Technology, Cambridge, MASM05/2010Computer Science
    Indian Institute of Technology Madras, Chennai, IndiaB. Tech06/2008Electrical Engineering
    Collapse Awards and Honors
    2015Dmitris N. Chorafas award for outstanding PhD thesis
    MIT2013  - 2014Thomas and Sarah Kailath Fellowship
    MIT2011  - 2012Thomas and Sarah Kailath Fellowship
    2010  - 2013Harvey Fellowship
    MIT2008  - 2009MIT Presidential Fellowship
    IIT Madras2008Siemens Prize for best academic record
    IIT Madras2008Institute Silver Medal

    Collapse Overview 
    Collapse Overview
    I am a postdoctoral fellow working with Prof. Shinya Yamanaka at Gladstone Institutes and UCSF on developing computational and molecular tools for dissecting and engineering Biology as well as developing next generation applications of pluripotent stem cells. I have previously worked with Prof. Timothy Lu @ MIT, where I obtained my PhD. Prior to that, I earned a Masters degree in Computer Science from MIT working with Prof. Dina Katabi as a Presidential Fellow and finished my Bachelor's degree in Electrical Engineering @ IIT Madras and was awarded an Institute medal
    Collapse Websites

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. CRISPR-Cas systems: Challenges and future prospects. Prog Mol Biol Transl Sci. 2021; 180:141-151. Gohil N, Bhattacharjee G, Lam NL, Perli SD, Singh V. PMID: 33934835.
      View in: PubMed   Mentions:    Fields:    
    2. Critical Roles of Translation Initiation and RNA Uridylation in Endogenous Retroviral Expression and Neural Differentiation in Pluripotent Stem Cells. Cell Rep. 2020 06 02; 31(9):107715. Takahashi K, Jeong D, Wang S, Narita M, Jin X, Iwasaki M, Perli SD, Conklin BR, Yamanaka S. PMID: 32492424.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    3. Ratiometric logic in living cells via competitive binding of synthetic transcription factors, ACM NanoCom. 2017. Samuel D. Perli and Timothy K. Lu. . View Publication.
    4. Analog synthetic gene networks, ACM NanoCom. 2016. Samuel D. Perli, Timothy K. Lu. View Publication.
    5. Continuous genetic recording with self-targeting CRISPR-Cas in human cells. Science. 2016 09 09; 353(6304). Perli SD, Cui CH, Lu TK. PMID: 27540006.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansCells
    6. Foundations and Emerging Paradigms for Computing in Living Cells. J Mol Biol. 2016 Feb 27; 428(5 Pt B):893-915. Ma KC, Perli SD, Lu TK. PMID: 26908220.
      View in: PubMed   Mentions: 5     Fields:    
    7. Multiplexed barcoded CRISPR-Cas9 screening enabled by CombiGEM. Proc Natl Acad Sci U S A. 2016 Mar 01; 113(9):2544-9. Wong AS, Choi GC, Cui CH, Pregernig G, Milani P, Adam M, Perli SD, Kazer SW, Gaillard A, Hermann M, Shalek AK, Fraenkel E, Lu TK. PMID: 26864203.
      View in: PubMed   Mentions: 53     Fields:    Translation:HumansCells
    8. Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells. Mol Cell. 2014 May 22; 54(4):698-710. Nissim L, Perli SD, Fridkin A, Perez-Pinera P, Lu TK. PMID: 24837679.
      View in: PubMed   Mentions: 138     Fields:    Translation:HumansCells
    9. Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas. ACS Synth Biol. 2013 Oct 18; 2(10):604-13. Farzadfard F, Perli SD, Lu TK. PMID: 23977949.
      View in: PubMed   Mentions: 114     Fields:    Translation:AnimalsCells
    10. Designing extensible protein-DNA interactions for synthetic biology, BioCAS. 2011. Kristjan E. Kaseniit, Samuel D. Perli and Timothy K. Lu. . View Publication.
    11. PixNet : LCD-Camera pairs as communication links, ACM SIGCOMM. 2010; 40(4):451-452. Samuel David Perli, Nabeel Ahmed and Dina Katabi. View Publication.
    12. PixNet: interference-free wireless links using LCD-camera pairs, ACM MobiCom. 2010; 137-148. Samuel David Perli, Nabeel Ahmed and Dina Katabi. View Publication.
    13. Interference Alignment and Cancellation, ACM SIGCOMM. 2009. Shyamnath Gollakota, Samuel D. Perli and Dina katabi. . View Publication.
    14. Network Coding for TCP Throughput Enhancement over a Multi-Hop Wireless Network, IEEE COMSWARE. 2008. P. Samuel David and Anurag Kumar. View Publication.
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