Bruce Conklin, MD

Title(s)Professor, Medicine
SchoolSchool of Medicine
Address1650 Owens St
San Francisco CA 94107
Phone415-734-2000
ORCID ORCID Icon0000-0003-1463-6061 Additional info
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    Collapse Biography 
    Collapse Education and Training
    University of California, Berkeley, CA, Berkeley CAA.B.06/1982Public Health
    Case Western Reserve School of Medicine, Cleveland OHM.D.06/1988Medicine
    Johns Hopkins Hospital, Baltimore, MD06/1990Internal Medicine
    University of California San Francisco, San Francisco CA01/1995Molecular Pharmacology
    Collapse Awards and Honors
    1990Medical Resident Research Award-NIDDK
    2003American Society for Clinical Investigation
    2008Scientific American 50 Award
    2011Fellow, California Academy of Sciences
    2016CWRU School of Medicine Distinguished Alumni Award

    Collapse Overview 
    Collapse Overview
    Therapeutic Approaches to Genetic Disease

    Genome Engineering
    The late Richard Feynman once said, “What I cannot create, I do not understand.” Human genetics began as observational science, but newly developed genome-engineering tools now allow us to directly test the cellular consequences of discrete genetic changes. We have developed efficient methods to edit one residue at a time in living human induced pluripotent stem (iPS) cells, resulting in “isogenic” lines of iPS cells. These isogenic lines form models that are now yielding phenotypes that are helping to explain the molecular basis of several human diseases. We are constructing collections of these isogenic lines that carry a range of disease mutations, from the most severe (rare) to the moderate (common) forms of cardiomyopathy.

    Precise Genome Editing for Human Therapy
    The rapid development of genome engineering, such as with the CRISPR system, now allows us to contemplate using these tools for human therapy in selective tissues. Using genome editing to “fix” a disease gene has great promise, because it could permanently correct the disease. However, tremendous challenges remain to ensure that only a specific part of the genome is edited, without causing “off-target” DNA damage that could lead to cancer. We focused on developing therapeutic editing for diseases of the heart and retina, because each tissue has unique challenges and opportunities. The heart has many newly described gene mutations that result in lethal heart failure (cardiomyopathy). Genome engineering can be used to cure cardiomyopathy mutations and validate targets for drug therapy; however, current engineering methods will need to be greatly enhanced before it can be used in vivo in the heart. In contrast, the retina has the advantage of a limited number of cells that can be directly targeted for therapy. These properties could potentially cure blindness caused by many gene mutations that currently have no therapy. We are developing proof-of-concept therapeutic editing methods in the retina that can be expanded to other tissues, such as the heart.

    Human Cardiac Disease Models
    We use iPS cells to model the genetic causes of human cardiomyopathy. Surprisingly, little is known about many genes associated with heart failure, from cardiomyopathy to abnormal heart rhythm, that results in “sudden death.” The heart provides an ideal system to determine the molecular basis of gene associations in human genetics. Until recently, modeling human gene variants in human cardiac tissue has been impossible. Human iPS cells now allow us to produce cardiovascular tissues that are identical, except for a single gene that has been altered by genome engineering. Our efforts have already been used to uncover multiple disease phenotypes and targets for drug therapy.

    CRISPR-Based Screens in Human Cardiac Disease Models
    Recently, we developed CRISPR-inhibition (CRISPRi) cell lines for highthroughput gene inactivation of thousands of different genes. CRISPRi screens can be used to identify the molecular basis of development, so that we can construct more mature human tissues and improved disease models. These studies will also allow us to identify drug targets that could be used for treating cardiomyopathy and other major diseases. We are currently focused on finding new pathways to enhance cardiac regeneration. In the future, other versions of the CRISPR system could be used to activate genes and control the epigenetic state of the genome.

    Future Directions
    We are developing new genome engineering methods in human iPS cells to identify therapeutic targets in cardiac disease. We are using these same tools to develop strategies for therapeutic genome editing. The combination of human iPS cells and genome editing provide unprecedented opportunities to explore new areas of biology and discover new therapies for disease.

    Selected Recent Publications
    1. Mandegar MA, Huebsch N, Frolov E, SHin E, Weissman JS, Qi LS, So P-L, Conklin BR. (2016) CRISPR interference efficiently induces gene knockdown and models disease in iPSCs. Cell Stem Cell. 18 1-13, April 7, 2016
    2. Huebsch N et al. (2015) Automated video-based analysis of contractility and calcium flux in human-induced pluripotent stem cell-derived cardiomyocytes cultured over different spatial scales. Tissue Eng. Part C Methods 21:467.
    3. Ma Z et al. (2015) Self-organizing human cardiac microchambers mediated by geometric confinement. Nat. Commun. 6:7413.
    4. Miyaoka Y et al. (2014) Isolation of single-base genome-edited human iPS cells without antibiotic selection. Nat. Methods 11:291.
    5. Spencer CI et al. (2014) Calcium transients closely reflect prolonged action potentials in iPSC models of inherited cardiac arrhythmia. Stem Cell Reports 3:269.

    Collapse Research 
    Collapse Research Activities and Funding
    C9orf72 frontotemporal dementia (FTD) and amyotrophic lateral sclerosis(ALS): using patient cells and CRISPR to reveal therapeutic approaches
    NIH RF1AG072052May 1, 2021 - Apr 30, 2024
    Role: Principal Investigator
    Therapeutic genome editing to treat Best disease
    NIH R01EY028249Sep 30, 2017 - Jun 30, 2022
    Role: Principal Investigator
    Protein quality control, cardiomyopathy, cardiotoxicity and human isogenic iPSCs
    NIH R01HL135358Jul 15, 2017 - Jun 30, 2021
    Role: Principal Investigator
    Identifying Therapeutic Targets for RNA Splicing-Related Cardiomyopathy
    NIH R01HL130533Dec 14, 2015 - Nov 30, 2019
    Role: Principal Investigator
    Disease Specific Cardiac Tissue Models
    NIH R01HL108677Sep 5, 2011 - May 31, 2015
    Role: Co-Principal Investigator
    Structures of Protein Complexes Regulating Transcription in Enbryonic Stem Cells
    NIH U01GM094614Sep 30, 2010 - Jun 30, 2016
    Role: Co-Investigator
    Induced Pluripotent Stem Cells in the Understanding and Treatment of Heart Diseas
    NIH U01HL100406Sep 30, 2009 - Oct 31, 2016
    Role: Co-Principal Investigator
    The Epigenetic Landscape of Heart Development
    NIH U01HL098179Sep 30, 2009 - Aug 31, 2015
    Role: Co-Principal Investigator
    Induced pluripotent stem cells in the understanding and treatment of heart diseas
    NIH R03HL096254Dec 1, 2008 - May 31, 2009
    Role: Co-Principal Investigator
    Transcriptional Networks During Cardiac Differentiation
    NIH P01HL089707Jul 1, 2007 - Jul 31, 2018
    Role: Co-Investigator
    GenMAPP-CS, a dynamic resource pathway analysis
    NIH R01GM080223Aug 18, 2004 - Jul 31, 2012
    Role: Principal Investigator
    GenMAPP: A tool for pathway analysis of genomic data
    NIH R01HG003053Aug 18, 2004 - Oct 31, 2007
    Role: Principal Investigator
    COLLABORATIVE R01--ROLES OF G PROTEINS IN CARDIOMYOPATHY
    NIH R01HL061689Sep 30, 1998 - Aug 31, 2003
    Role: Principal Investigator
    Tissue Engineering with a Modular RASSL Toolbox
    NIH R01HL060664Jul 1, 1998 - Jun 30, 2013
    Role: Principal Investigator
    MUTANT G PROTEINS REVEAL SIGNALING PATHWAYS
    NIH K11HL002555Jan 1, 1991 - Dec 31, 1995
    Role: Principal Investigator

    Collapse ORNG Applications 
    Collapse Featured Publications
    Collapse Faculty Mentoring

    Collapse Featured Content 
    Collapse Featured Videos

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Transcription factor overexpression drives reliable differentiation of retinal pigment epithelium from human induced pluripotent stem cells. Stem Cell Res. 2021 05; 53:102368. Dewell TE, Gjoni K, Liu AZ, Libby ARG, Moore AT, So PL, Conklin BR. PMID: 34087997.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    2. SARS-CoV-2 infection of human iPSC-derived cardiac cells reflects cytopathic features in hearts of patients with COVID-19. Sci Transl Med. 2021 04 21; 13(590). Perez-Bermejo JA, Kang S, Rockwood SJ, Simoneau CR, Joy DA, Silva AC, Ramadoss GN, Flanigan WR, Fozouni P, Li H, Chen PY, Nakamura K, Whitman JD, Hanson PJ, McManus BM, Ott M, Conklin BR, McDevitt TC. PMID: 33723017.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    3. BRD2 inhibition blocks SARS-CoV-2 infection in vitro by reducing transcription of the host cell receptor ACE2. bioRxiv. 2021 Jan 19. Tian R, Samelson AJ, Rezelj VV, Chen M, Ramadoss GN, Guo X, Kain AM, Tran QD, Lim SA, Lui I, Nunez J, Rockwood SJ, Liu N, Carlson-Stevermer J, Oki J, Maures T, Holden K, Weissman JS, Wells JA, Conklin B, Vignuzzi M, Kampmann M. PMID: 33501440.
      View in: PubMed   Mentions:
    4. Investigating Zeta Globin Gene Expression to Develop a Potential Therapy for Alpha Thalassemia Major. Blood. 2020 Nov 5; 136(Supplement 1):3-4. Georgia L. Gregory, Beeke Wienert, Marisa Schwab, Billie Rachael Lianoglou, Roger P. Hollis, Donald B. Kohn, Bruce R. Conklin, Tippi C. MacKenzie. .
      View in: Publisher Site   Mentions:
    5. SARS-CoV-2 infection of human iPSC-derived cardiac cells predicts novel cytopathic features in hearts of COVID-19 patients. bioRxiv. 2020 Sep 12. Pérez-Bermejo JA, Kang S, Rockwood SJ, Simoneau CR, Joy DA, Ramadoss GN, Silva AC, Flanigan WR, Li H, Nakamura K, Whitman JD, Ott M, Conklin BR, McDevitt TC. PMID: 32935097.
      View in: PubMed   Mentions:
    6. Rapid, precise quantification of large DNA excisions and inversions by ddPCR. Sci Rep. 2020 09 10; 10(1):14896. Watry HL, Feliciano CM, Gjoni K, Takahashi G, Miyaoka Y, Conklin BR, Judge LM. PMID: 32913194.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    7. Critical Roles of Translation Initiation and RNA Uridylation in Endogenous Retroviral Expression and Neural Differentiation in Pluripotent Stem Cells. Cell Rep. 2020 06 02; 31(9):107715. Takahashi K, Jeong D, Wang S, Narita M, Jin X, Iwasaki M, Perli SD, Conklin BR, Yamanaka S. PMID: 32492424.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    8. Timed inhibition of CDC7 increases CRISPR-Cas9 mediated templated repair. Nat Commun. 2020 04 30; 11(1):2109. Wienert B, Nguyen DN, Guenther A, Feng SJ, Locke MN, Wyman SK, Shin J, Kazane KR, Gregory GL, Carter MAM, Wright F, Conklin BR, Marson A, Richardson CD, Corn JE. PMID: 32355159.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    9. CRISPR off-target detection with DISCOVER-seq. Nat Protoc. 2020 05; 15(5):1775-1799. Wienert B, Wyman SK, Yeh CD, Conklin BR, Corn JE. PMID: 32313254.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    10. Cardiac Microtissues: Maladaptive Contractility of 3D Human Cardiac Microtissues to Mechanical Nonuniformity (Adv. Healthcare Mater. 8/2020). Advanced Healthcare Materials. 2020 Apr 1; 9(8):2070024. Chenyan Wang, Sangmo Koo, Minok Park, Zacharias Vangelatos, Plansky Hoang, Bruce R. Conklin, Costas P. Grigoropoulos, Kevin E. Healy, Zhen Ma. .
      View in: Publisher Site   Mentions:
    11. Maladaptive Contractility of 3D Human Cardiac Microtissues to Mechanical Nonuniformity. Adv Healthc Mater. 2020 04; 9(8):e1901373. Wang C, Koo S, Park M, Vangelatos Z, Hoang P, Conklin BR, Grigoropoulos CP, Healy KE, Ma Z. PMID: 32090507.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    12. Automated Design of Pluripotent Stem Cell Self-Organization. Cell Syst. 2019 11 27; 9(5):483-495.e10. Libby ARG, Briers D, Haghighi I, Joy DA, Conklin BR, Belta C, McDevitt TC. PMID: 31759947.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    13. AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design. Genome Biol. 2019 08 15; 20(1):167. Keough KC, Lyalina S, Olvera MP, Whalen S, Conklin BR, Pollard KS. PMID: 31416467.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    14. Abstract 934: Physical and Genetic Interaction Analyses in Human Pluripotent Stem Cell-Derived Cardiomyocytes to Study Protein Quality Control Disease in the Heart. Circulation Research. 2019 Aug 2; 125(Suppl_1). Juan A Perez-Bermejo, Luke M Judge, Kenneth Wu, Christina L Jensen, Robyn M Kaake, Danielle Swaney, Po-Lin So, Nevan J Krogan, Bruce R Conklin. .
      View in: Publisher Site   Mentions:
    15. Phenotype-Based High-Throughput Classification of Long QT Syndrome Subtypes Using Human Induced Pluripotent Stem Cells. Stem Cell Reports. 2019 08 13; 13(2):394-404. Yoshinaga D, Baba S, Makiyama T, Shibata H, Hirata T, Akagi K, Matsuda K, Kohjitani H, Wuriyanghai Y, Umeda K, Yamamoto Y, Conklin BR, Horie M, Takita J, Heike T. PMID: 31378668.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    16. Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes. Nat Genet. 2019 08; 51(8):1252-1262. Song M, Yang X, Ren X, Maliskova L, Li B, Jones IR, Wang C, Jacob F, Wu K, Traglia M, Tam TW, Jamieson K, Lu SY, Ming GL, Li Y, Yao J, Weiss LA, Dixon JR, Judge LM, Conklin BR, Song H, Gan L, Shen Y. PMID: 31367015.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    17. A NOVEL ROLE FOR THE FTD-CAUSING PROTEIN PROGRANULIN IN APOPTOSIS SIGNALING. Alzheimer's & Dementia. 2019 Jul 1; 15(7):p1509. Claire Clelland, J. Iker Etchegaray, Lay Kodama, Faten Sayed, Aradhana Sachdev, Yaqiao Li, David Le, Lihong Zhan, Yungui Zhou, Duc Duong, Nicholas T. Seyfried, Thomas G. Kukar, Li Xuan Tan, Aparna Lakkaraju, Bruce Conklin, Li Gan. .
      View in: Publisher Site   Mentions:
    18. Unbiased detection of CRISPR off-targets in vivo using DISCOVER-Seq. Science. 2019 04 19; 364(6437):286-289. Wienert B, Wyman SK, Richardson CD, Yeh CD, Akcakaya P, Porritt MJ, Morlock M, Vu JT, Kazane KR, Watry HL, Judge LM, Conklin BR, Maresca M, Corn JE. PMID: 31000663.
      View in: PubMed   Mentions: 75     Fields:    Translation:HumansAnimalsCells
    19. On the road to a gene drive in mammals. Nature. 2019 02; 566(7742):43-45. Conklin BR. PMID: 30710124.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    20. MESP1 knock-down in human iPSC attenuates early vascular progenitor cell differentiation after completed primitive streak specification. Dev Biol. 2019 01 01; 445(1):1-7. Eskildsen TV, Ayoubi S, Thomassen M, Burton M, Mandegar MA, Conklin BR, Jensen CH, Andersen DC, Sheikh SP. PMID: 30389344.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    21. Spatiotemporal mosaic self-patterning of pluripotent stem cells using CRISPR interference. Elife. 2018 10 09; 7. Libby AR, Joy DA, So PL, Mandegar MA, Muncie JM, Mendoza-Camacho FN, Weaver VM, Conklin BR, McDevitt TC. PMID: 30298816.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    22. Contractile deficits in engineered cardiac microtissues as a result of MYBPC3 deficiency and mechanical overload. Nat Biomed Eng. 2018 12; 2(12):955-967. Ma Z, Huebsch N, Koo S, Mandegar MA, Siemons B, Boggess S, Conklin BR, Grigoropoulos CP, Healy KE. PMID: 31015724.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    23. Quantitatively characterizing drug-induced arrhythmic contractile motions of human stem cell-derived cardiomyocytes. Biotechnol Bioeng. 2018 08; 115(8):1958-1970. Hoang P, Huebsch N, Bang SH, Siemons BA, Conklin BR, Healy KE, Ma Z, Jacquir S. PMID: 29663322.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    24. Quantitatively Characterizing Drug-Induced Arrhythmic Contractile Motions of Human Stem Cell-Derived Cardiomyocytes. Biotechnology and Bioengineering. 2018 Apr 12. Plansky Hoang, Nathaniel Huebsch, Shin Hyuk Bang, Brian A. Siemons, Bruce R. Conklin, Kevin E. Healy, Zhen Ma, Sabir Jacquir. .
      View in: Publisher Site   Mentions:
    25. Generation of spatial-patterned early-developing cardiac organoids using human pluripotent stem cells. Nat Protoc. 2018 04; 13(4):723-737. Hoang P, Wang J, Conklin BR, Healy KE, Ma Z. PMID: 29543795.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansCells
    26. Detection and Quantification of HDR and NHEJ Induced by Genome Editing at Endogenous Gene Loci Using Droplet Digital PCR. Methods Mol Biol. 2018; 1768:349-362. Miyaoka Y, Mayerl SJ, Chan AH, Conklin BR. PMID: 29717453.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    27. TMOD-09. HUMAN PLURIPOTENT STEM CELL-BASED MODELS OF NEUROBLASTOMA. Neuro-Oncology. 2017 Nov 6; 19(suppl_6):vi256-vi256. Miller Huang, Tina Zheng, Jeffrey Guo, Colin Sperring, Matthew Miller, Lauren McHenry, Qiqi Zhen, Branden Moriarity, Marianne Bronner, Bruce Conklin, David Largaespada, John Maris, Katherine Matthay, William Weiss. .
      View in: Publisher Site   Mentions:
    28. A BAG3 chaperone complex maintains cardiomyocyte function during proteotoxic stress. JCI Insight. 2017 Jul 20; 2(14). Judge LM, Perez-Bermejo JA, Truong A, Ribeiro AJ, Yoo JC, Jensen CL, Mandegar MA, Huebsch N, Kaake RM, So PL, Srivastava D, Pruitt BL, Krogan NJ, Conklin BR. PMID: 28724793.
      View in: PubMed   Mentions: 24     Fields:    
    29. Multi-Imaging Method to Assay the Contractile Mechanical Output of Micropatterned Human iPSC-Derived Cardiac Myocytes. Circ Res. 2017 May 12; 120(10):1572-1583. Ribeiro AJS, Schwab O, Mandegar MA, Ang YS, Conklin BR, Srivastava D, Pruitt BL. PMID: 28400398.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansCells
    30. CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. Science. 2017 01 06; 355(6320). Liu SJ, Horlbeck MA, Cho SW, Birk HS, Malatesta M, He D, Attenello FJ, Villalta JE, Cho MY, Chen Y, Mandegar MA, Olvera MP, Gilbert LA, Conklin BR, Chang HY, Weissman JS, Lim DA. PMID: 27980086.
      View in: PubMed   Mentions: 187     Fields:    Translation:HumansCells
    31. Engineered human pluripotent-stem-cell-derived intestinal tissues with a functional enteric nervous system. Nat Med. 2017 01; 23(1):49-59. Workman MJ, Mahe MM, Trisno S, Poling HM, Watson CL, Sundaram N, Chang CF, Schiesser J, Aubert P, Stanley EG, Elefanty AG, Miyaoka Y, Mandegar MA, Conklin BR, Neunlist M, Brugmann SA, Helmrath MA, Wells JM. PMID: 27869805.
      View in: PubMed   Mentions: 132     Fields:    Translation:HumansAnimalsCells
    32. GENT-49. SYSTEMATIC IDENTIFICATION OF ESSENTIAL LONG NON-CODING RNA GENES IN GLIOBLASTOMA. Neuro-Oncology. 2016 Nov 1; 18(suppl_6):vi84-vi85. Siyuan Liu, Max Horlbeck, Seung Woo Cho, Harjus Birk, Martina Malatesta, Daniel He, Jacqueline Villalta, Min Cho, Yuwen Chen, Mohammad Mandegar, Michael Olvera, Bruce Conklin, Howard Chang, Jonathan Weissman, Daniel Lim. .
      View in: Publisher Site   Mentions:
    33. BMP-SMAD-ID promotes reprogramming to pluripotency by inhibiting p16/INK4A-dependent senescence. Proc Natl Acad Sci U S A. 2016 11 15; 113(46):13057-13062. Hayashi Y, Hsiao EC, Sami S, Lancero M, Schlieve CR, Nguyen T, Yano K, Nagahashi A, Ikeya M, Matsumoto Y, Nishimura K, Fukuda A, Hisatake K, Tomoda K, Asaka I, Toguchida J, Conklin BR, Yamanaka S. PMID: 27794120.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimalsCells
    34. Organs-on-a-chip – Microphysiological platforms as in vitro models of cardiac and adipose tissue. Toxicology Letters. 2016 Sep 1; 258:s153. P. Loskill, A. Mathur, B.R. Conklin, A. Stahl, L.P. Lee, K.E. Healy. .
      View in: Publisher Site   Mentions:
    35. Using Digital Polymerase Chain Reaction to Detect Single-Nucleotide Substitutions Induced by Genome Editing. Cold Spring Harb Protoc. 2016 08 01; 2016(8). Miyaoka Y, Chan AH, Conklin BR. PMID: 27250210.
      View in: PubMed   Mentions: 1     Fields:    
    36. Detecting Single-Nucleotide Substitutions Induced by Genome Editing. Cold Spring Harb Protoc. 2016 08 01; 2016(8). Miyaoka Y, Chan AH, Conklin BR. PMID: 27250209.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    37. Ligand-binding domains of nuclear receptors facilitate tight control of split CRISPR activity. Nat Commun. 2016 07 01; 7:12009. Nguyen DP, Miyaoka Y, Gilbert LA, Mayerl SJ, Lee BH, Weissman JS, Conklin BR, Wells JA. PMID: 27363581.
      View in: PubMed   Mentions: 30     Fields:    Translation:Cells
    38. Miniaturized iPS-Cell-Derived Cardiac Muscles for Physiologically Relevant Drug Response Analyses. Sci Rep. 2016 Apr 20; 6:24726. Huebsch N, Loskill P, Deveshwar N, Spencer CI, Judge LM, Mandegar MA, Fox CB, Mohamed TM, Ma Z, Mathur A, Sheehan AM, Truong A, Saxton M, Yoo J, Srivastava D, Desai TA, So PL, Healy KE, Conklin BR. PMID: 27095412.
      View in: PubMed   Mentions: 65     Fields:    Translation:HumansCells
    39. Systematic quantification of HDR and NHEJ reveals effects of locus, nuclease, and cell type on genome-editing. Sci Rep. 2016 Mar 31; 6:23549. Miyaoka Y, Berman JR, Cooper SB, Mayerl SJ, Chan AH, Zhang B, Karlin-Neumann GA, Conklin BR. PMID: 27030102.
      View in: PubMed   Mentions: 62     Fields:    Translation:HumansCells
    40. CRISPR Interference Efficiently Induces Specific and Reversible Gene Silencing in Human iPSCs. Cell Stem Cell. 2016 Apr 07; 18(4):541-53. Mandegar MA, Huebsch N, Frolov EB, Shin E, Truong A, Olvera MP, Chan AH, Miyaoka Y, Holmes K, Spencer CI, Judge LM, Gordon DE, Eskildsen TV, Villalta JE, Horlbeck MA, Gilbert LA, Krogan NJ, Sheikh SP, Weissman JS, Qi LS, So PL, Conklin BR. PMID: 26971820.
      View in: PubMed   Mentions: 121     Fields:    Translation:HumansCells
    41. Generating trunk neural crest from human pluripotent stem cells. Sci Rep. 2016 Jan 27; 6:19727. Huang M, Miller ML, McHenry LK, Zheng T, Zhen Q, Ilkhanizadeh S, Conklin BR, Bronner ME, Weiss WA. PMID: 26812940.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    42. Efficient CRISPR/Cas9-Based Genome Engineering in Human Pluripotent Stem Cells. Curr Protoc Hum Genet. 2016 Jan 01; 88:21.4.1-21.4.23. Kime C, Mandegar MA, Srivastava D, Yamanaka S, Conklin BR, Rand TA. PMID: 26724721.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    43. Self-organizing human cardiac microchambers mediated by geometric confinement. Nat Commun. 2015 Jul 14; 6:7413. Ma Z, Wang J, Loskill P, Huebsch N, Koo S, Svedlund FL, Marks NC, Hua EW, Grigoropoulos CP, Conklin BR, Healy KE. PMID: 26172574.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansCells
    44. Dysregulation of locus coeruleus development in congenital central hypoventilation syndrome. Acta Neuropathol. 2015 Aug; 130(2):171-83. Nobuta H, Cilio MR, Danhaive O, Tsai HH, Tupal S, Chang SM, Murnen A, Kreitzer F, Bravo V, Czeisler C, Gokozan HN, Gygli P, Bush S, Weese-Mayer DE, Conklin B, Yee SP, Huang EJ, Gray PA, Rowitch D, Otero JJ. PMID: 25975378.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimalsCells
    45. Loss of Gi G-Protein-Coupled Receptor Signaling in Osteoblasts Accelerates Bone Fracture Healing. J Bone Miner Res. 2015 Oct; 30(10):1896-904. Wang L, Hsiao EC, Lieu S, Scott M, O'Carroll D, Urrutia A, Conklin BR, Colnot C, Nissenson RA. PMID: 25917236.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    46. Structure-based discovery of NANOG variant with enhanced properties to promote self-renewal and reprogramming of pluripotent stem cells. Proc Natl Acad Sci U S A. 2015 Apr 14; 112(15):4666-71. Hayashi Y, Caboni L, Das D, Yumoto F, Clayton T, Deller MC, Nguyen P, Farr CL, Chiu HJ, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Tomoda K, Conklin BR, Wilson IA, Yamanaka S, Fletterick RJ. PMID: 25825768.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    47. A non-invasive platform for functional characterization of stem-cell-derived cardiomyocytes with applications in cardiotoxicity testing. Stem Cell Reports. 2015 Apr 14; 4(4):621-31. Maddah M, Heidmann JD, Mandegar MA, Walker CD, Bolouki S, Conklin BR, Loewke KE. PMID: 25801505.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansCells
    48. Human iPSC-based cardiac microphysiological system for drug screening applications. Sci Rep. 2015 Mar 09; 5:8883. Mathur A, Loskill P, Shao K, Huebsch N, Hong S, Marcus SG, Marks N, Mandegar M, Conklin BR, Lee LP, Healy KE. PMID: 25748532.
      View in: PubMed   Mentions: 132     Fields:    Translation:HumansCells
    49. Assessing the osteoblast transcriptome in a model of enhanced bone formation due to constitutive Gs-G protein signaling in osteoblasts. Exp Cell Res. 2015 May 01; 333(2):289-302. Wattanachanya L, Wang L, Millard SM, Lu WD, O'Carroll D, Hsiao EC, Conklin BR, Nissenson RA. PMID: 25704759.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    50. Gai/o-coupled receptor signaling restricts pancreatic ß-cell expansion. Proc Natl Acad Sci U S A. 2015 Mar 03; 112(9):2888-93. Berger M, Scheel DW, Macias H, Miyatsuka T, Kim H, Hoang P, Ku GM, Honig G, Liou A, Tang Y, Regard JB, Sharifnia P, Yu L, Wang J, Coughlin SR, Conklin BR, Deneris ES, Tecott LH, German MS. PMID: 25695968.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    51. Astrocytic adenosine receptor A2A and Gs-coupled signaling regulate memory. Nat Neurosci. 2015 Mar; 18(3):423-34. Orr AG, Hsiao EC, Wang MM, Ho K, Kim DH, Wang X, Guo W, Kang J, Yu GQ, Adame A, Devidze N, Dubal DB, Masliah E, Conklin BR, Mucke L. PMID: 25622143.
      View in: PubMed   Mentions: 65     Fields:    Translation:HumansAnimalsCells
    52. Automated Video-Based Analysis of Contractility and Calcium Flux in Human-Induced Pluripotent Stem Cell-Derived Cardiomyocytes Cultured over Different Spatial Scales. Tissue Eng Part C Methods. 2015 May; 21(5):467-79. Huebsch N, Loskill P, Mandegar MA, Marks NC, Sheehan AS, Ma Z, Mathur A, Nguyen TN, Yoo JC, Judge LM, Spencer CI, Chukka AC, Russell CR, So PL, Conklin BR, Healy KE. PMID: 25333967.
      View in: PubMed   Mentions: 83     Fields:    Translation:HumansCells
    53. Classifying the Electrophysiological Effects of Chronotropic Drugs on Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes using Voltage Sensitive Dyes and Supervised Machine Learning. Biophysical Journal. 2015 Jan 1; 108(2):110a. Christopher M. Heylman, Rupsa Datta, Bruce R. Conklin, Steven C. George, Enrico Gratton. .
      View in: Publisher Site   Mentions:
    54. Calcium transients closely reflect prolonged action potentials in iPSC models of inherited cardiac arrhythmia. Stem Cell Reports. 2014 Aug 12; 3(2):269-81. Spencer CI, Baba S, Nakamura K, Hua EA, Sears MA, Fu CC, Zhang J, Balijepalli S, Tomoda K, Hayashi Y, Lizarraga P, Wojciak J, Scheinman MM, Aalto-Setälä K, Makielski JC, January CT, Healy KE, Kamp TJ, Yamanaka S, Conklin BR. PMID: 25254341.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansCells
    55. Synthetic control of mammalian-cell motility by engineering chemotaxis to an orthogonal bioinert chemical signal. Proc Natl Acad Sci U S A. 2014 Apr 22; 111(16):5896-901. Park JS, Rhau B, Hermann A, McNally KA, Zhou C, Gong D, Weiner OD, Conklin BR, Onuffer J, Lim WA. PMID: 24711398.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimalsCells
    56. Isolation of single-base genome-edited human iPS cells without antibiotic selection. Nat Methods. 2014 Mar; 11(3):291-3. Miyaoka Y, Chan AH, Judge LM, Yoo J, Huang M, Nguyen TD, Lizarraga PP, So PL, Conklin BR. PMID: 24509632.
      View in: PubMed   Mentions: 105     Fields:    Translation:HumansCells
    57. Human induced pluripotent stem cell-based microphysiological tissue models of myocardium and liver for drug development. Stem Cell Res Ther. 2013; 4 Suppl 1:S14. Mathur A, Loskill P, Hong S, Lee J, Marcus SG, Dumont L, Conklin BR, Willenbring H, Lee LP, Healy KE. PMID: 24565415.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    58. Induced pluripotent stem cells from patients with human fibrodysplasia ossificans progressiva show increased mineralization and cartilage formation. Orphanet J Rare Dis. 2013 Dec 09; 8:190. Matsumoto Y, Hayashi Y, Schlieve CR, Ikeya M, Kim H, Nguyen TD, Sami S, Baba S, Barruet E, Nasu A, Asaka I, Otsuka T, Yamanaka S, Conklin BR, Toguchida J, Hsiao EC. PMID: 24321451.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansAnimalsCells
    59. Three-dimensional filamentous human diseased cardiac tissue model. Biomaterials. 2014 Feb; 35(5):1367-77. Ma Z, Koo S, Finnegan MA, Loskill P, Huebsch N, Marks NC, Conklin BR, Grigoropoulos CP, Healy KE. PMID: 24268663.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansCells
    60. The C-terminus of the long AKAP13 isoform (AKAP-Lbc) is critical for development of compensatory cardiac hypertrophy. J Mol Cell Cardiol. 2014 Jan; 66:27-40. Taglieri DM, Johnson KR, Burmeister BT, Monasky MM, Spindler MJ, DeSantiago J, Banach K, Conklin BR, Carnegie GK. PMID: 24161911.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    61. Sculpting genomes with a hammer and chisel. Nat Methods. 2013 Sep; 10(9):839-40. Conklin BR. PMID: 23985729.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    62. A robust method to derive functional neural crest cells from human pluripotent stem cells. Am J Stem Cells. 2013; 2(2):119-31. Kreitzer FR, Salomonis N, Sheehan A, Huang M, Park JS, Spindler MJ, Lizarraga P, Weiss WA, So PL, Conklin BR. PMID: 23862100.
      View in: PubMed   Mentions:
    63. AKAP13 Rho-GEF and PKD-binding domain deficient mice develop normally but have an abnormal response to ß-adrenergic-induced cardiac hypertrophy. PLoS One. 2013; 8(4):e62705. Spindler MJ, Burmeister BT, Huang Y, Hsiao EC, Salomonis N, Scott MJ, Srivastava D, Carnegie GK, Conklin BR. PMID: 23658642.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    64. Structure of a novel winged-helix like domain from human NFRKB protein. PLoS One. 2012; 7(9):e43761. Kumar A, Möcklinghoff S, Yumoto F, Jaroszewski L, Farr CL, Grzechnik A, Nguyen P, Weichenberger CX, Chiu HJ, Klock HE, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Conklin BR, Fletterick RJ, Wilson IA. PMID: 22984442.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    65. Derivation conditions impact X-inactivation status in female human induced pluripotent stem cells. Cell Stem Cell. 2012 Jul 06; 11(1):91-9. Tomoda K, Takahashi K, Leung K, Okada A, Narita M, Yamada NA, Eilertson KE, Tsang P, Baba S, White MP, Sami S, Srivastava D, Conklin BR, Panning B, Yamanaka S. PMID: 22770243.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansCells
    66. GO-Elite: a flexible solution for pathway and ontology over-representation. Bioinformatics. 2012 Aug 15; 28(16):2209-10. Zambon AC, Gaj S, Ho I, Hanspers K, Vranizan K, Evelo CT, Conklin BR, Pico AR, Salomonis N. PMID: 22743224.
      View in: PubMed   Mentions: 123     Fields:    
    67. WikiPathways: building research communities on biological pathways. Nucleic Acids Res. 2012 Jan; 40(Database issue):D1301-7. Kelder T, van Iersel MP, Hanspers K, Kutmon M, Conklin BR, Evelo CT, Pico AR. PMID: 22096230.
      View in: PubMed   Mentions: 220     Fields:    
    68. Model for long QT syndrome type 2 using human iPS cells demonstrates arrhythmogenic characteristics in cell culture. Dis Model Mech. 2012 Mar; 5(2):220-30. Lahti AL, Kujala VJ, Chapman H, Koivisto AP, Pekkanen-Mattila M, Kerkelä E, Hyttinen J, Kontula K, Swan H, Conklin BR, Yamanaka S, Silvennoinen O, Aalto-Setälä K. PMID: 22052944.
      View in: PubMed   Mentions: 132     Fields:    Translation:HumansCells
    69. Mineral composition is altered by osteoblast expression of an engineered G(s)-coupled receptor. Calcif Tissue Int. 2011 Jul; 89(1):10-20. Kazakia GJ, Speer D, Shanbhag S, Majumdar S, Conklin BR, Nissenson RA, Hsiao EC. PMID: 21526395.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    70. Blockade of receptor-activated G(i) signaling in osteoblasts in vivo leads to site-specific increases in cortical and cancellous bone formation. J Bone Miner Res. 2011 Apr; 26(4):822-32. Millard SM, Louie AM, Wattanachanya L, Wronski TJ, Conklin BR, Nissenson RA. PMID: 20939063.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    71. Constitutive Gs activation using a single-construct tetracycline-inducible expression system in embryonic stem cells and mice. Stem Cell Res Ther. 2011 Mar 04; 2(2):11. Hsiao EC, Nguyen TD, Ng JK, Scott MJ, Chang WC, Zahed H, Conklin BR. PMID: 21375737.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    72. Finding the right questions: exploratory pathway analysis to enhance biological discovery in large datasets. PLoS Biol. 2010 Aug 31; 8(8). Kelder T, Conklin BR, Evelo CT, Pico AR. PMID: 20824171.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    73. Stem cell pluripotency: alternative modes of transcription regulation. . 2010 Aug 15; 9(16):3133-4. Salomonis N, Conklin BR. PMID: 20814242.
      View in: PubMed   Mentions:
    74. Reporter-based isolation of induced pluripotent stem cell- and embryonic stem cell-derived cardiac progenitors reveals limited gene expression variance. Circ Res. 2010 Aug 06; 107(3):340-7. van Laake LW, Qian L, Cheng P, Huang Y, Hsiao EC, Conklin BR, Srivastava D. PMID: 20558827.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    75. AltAnalyze and DomainGraph: analyzing and visualizing exon expression data. Nucleic Acids Res. 2010 Jul; 38(Web Server issue):W755-62. Emig D, Salomonis N, Baumbach J, Lengauer T, Conklin BR, Albrecht M. PMID: 20513647.
      View in: PubMed   Mentions: 148     Fields:    Translation:HumansAnimalsCells
    76. Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation. Proc Natl Acad Sci U S A. 2010 Jun 08; 107(23):10514-9. Salomonis N, Schlieve CR, Pereira L, Wahlquist C, Colas A, Zambon AC, Vranizan K, Spindler MJ, Pico AR, Cline MS, Clark TA, Williams A, Blume JE, Samal E, Mercola M, Merrill BJ, Conklin BR. PMID: 20498046.
      View in: PubMed   Mentions: 110     Fields:    Translation:HumansAnimalsCells
    77. Gs G protein-coupled receptor signaling in osteoblasts elicits age-dependent effects on bone formation. J Bone Miner Res. 2010 Mar; 25(3):584-93. Hsiao EC, Boudignon BM, Halloran BP, Nissenson RA, Conklin BR. PMID: 20200944.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    78. Ligand-mediated activation of an engineered gs g protein-coupled receptor in osteoblasts increases trabecular bone formation. Mol Endocrinol. 2010 Mar; 24(3):621-31. Hsiao EC, Millard SM, Louie A, Huang Y, Conklin BR, Nissenson RA. PMID: 20150184.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    79. Cloning mice and men: prohibiting the use of iPS cells for human reproductive cloning. Cell Stem Cell. 2010 Jan 08; 6(1):16-20. Lo B, Parham L, Alvarez-Buylla A, Cedars M, Conklin B, Fisher S, Gates E, Giudice L, Halme DG, Hershon W, Kriegstein A, Kwok PY, Wagner R. PMID: 20085739.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    80. The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services. BMC Bioinformatics. 2010 Jan 04; 11:5. van Iersel MP, Pico AR, Kelder T, Gao J, Ho I, Hanspers K, Conklin BR, Evelo CT. PMID: 20047655.
      View in: PubMed   Mentions: 53     Fields:    
    81. G(i)-coupled GPCR signaling controls the formation and organization of human pluripotent colonies. PLoS One. 2009 Nov 10; 4(11):e7780. Nakamura K, Salomonis N, Tomoda K, Yamanaka S, Conklin BR. PMID: 19936228.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    82. Alternative splicing in the differentiation of human embryonic stem cells into cardiac precursors. PLoS Comput Biol. 2009 Nov; 5(11):e1000553. Salomonis N, Nelson B, Vranizan K, Pico AR, Hanspers K, Kuchinsky A, Ta L, Mercola M, Conklin BR. PMID: 19893621.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansCells
    83. Journal club. A geneticist wonders why we need to sleep. Nature. 2009 Oct 01; 461(7264):573. Conklin BR. PMID: 19794457.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    84. Consent: criteria should be drawn up for tissue donors. Nature. 2009 Oct 01; 461(7264):593. Lo B, Conklin BR. PMID: 19794473.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    85. Mining biological pathways using WikiPathways web services. PLoS One. 2009 Jul 30; 4(7):e6447. Kelder T, Pico AR, Hanspers K, van Iersel MP, Evelo C, Conklin BR. PMID: 19649250.
      View in: PubMed   Mentions: 57     Fields:    
    86. AKAP10 (I646V) functional polymorphism predicts heart rate and heart rate variability in apparently healthy, middle-aged European-Americans. Psychophysiology. 2009 May; 46(3):466-72. Neumann SA, Tingley WG, Conklin BR, Shrader CJ, Peet E, Muldoon MF, Jennings JR, Ferrell RE, Manuck SB. PMID: 19496216.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    87. Endogenous Gi signaling in osteoblasts participates in sexually dimorphic regulation of cancellous bone structure. Bone. 2009 May 1; 44:s153. S. Millard, A. Louie, C. Manalac, W. Lu, N. Cotte, T.J. Wronski, B. Conklin, R.A. Nissenson. .
      View in: Publisher Site   Mentions:
    88. Lentiviral vectors and protocols for creation of stable hESC lines for fluorescent tracking and drug resistance selection of cardiomyocytes. PLoS One. 2009; 4(4):e5046. Kita-Matsuo H, Barcova M, Prigozhina N, Salomonis N, Wei K, Jacot JG, Nelson B, Spiering S, Haverslag R, Kim C, Talantova M, Bajpai R, Calzolari D, Terskikh A, McCulloch AD, Price JH, Conklin BR, Chen HS, Mercola M. PMID: 19352491.
      View in: PubMed   Mentions: 116     Fields:    Translation:HumansCells
    89. Obtaining consent for future research with induced pluripotent cells: opportunities and challenges. PLoS Biol. 2009 Feb 24; 7(2):e42. Aalto-Setälä K, Conklin BR, Lo B. PMID: 19243222.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCells
    90. SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system. Nucleic Acids Res. 2009 Jan; 37(Database issue):D803-9. Pico AR, Smirnov IV, Chang JS, Yeh RF, Wiemels JL, Wiencke JK, Tihan T, Conklin BR, Wrensch M. PMID: 18984625.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    91. Presenting and exploring biological pathways with PathVisio. BMC Bioinformatics. 2008 Sep 25; 9:399. van Iersel MP, Kelder T, Pico AR, Hanspers K, Coort S, Conklin BR, Evelo C. PMID: 18817533.
      View in: PubMed   Mentions: 157     Fields:    Translation:Cells
    92. Engineering GPCR signaling pathways with RASSLs. Nat Methods. 2008 Aug; 5(8):673-8. Conklin BR, Hsiao EC, Claeysen S, Dumuis A, Srinivasan S, Forsayeth JR, Guettier JM, Chang WC, Pei Y, McCarthy KD, Nissenson RA, Wess J, Bockaert J, Roth BL. PMID: 18668035.
      View in: PubMed   Mentions: 106     Fields:    Translation:HumansAnimalsCells
    93. WikiPathways: pathway editing for the people. PLoS Biol. 2008 Jul 22; 6(7):e184. Pico AR, Kelder T, van Iersel MP, Hanspers K, Conklin BR, Evelo C. PMID: 18651794.
      View in: PubMed   Mentions: 243     Fields:    Translation:Cells
    94. Marking embryonic stem cells with a 2A self-cleaving peptide: a NKX2-5 emerald GFP BAC reporter. PLoS One. 2008 Jul 02; 3(7):e2532. Hsiao EC, Yoshinaga Y, Nguyen TD, Musone SL, Kim JE, Swinton P, Espineda I, Manalac C, deJong PJ, Conklin BR. PMID: 18596956.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansAnimalsCells
    95. An Introduction to Pathway Analysis with GenMAPP. NCI Nature Pathway Interaction Database. 2008 Apr 8. Kristina Hanspers, Alexander R. Pico, Nathan Salomonis, Alexander C. Zambon, Karen Vranizan, Steven C. Lawlor, Kam D. Dahlquist, Scott W. Doniger, Bruce R. Conklin. .
      View in: Publisher Site   Mentions:
    96. MicroRNA regulation of cell lineages in mouse and human embryonic stem cells. Cell Stem Cell. 2008 Mar 06; 2(3):219-29. Ivey KN, Muth A, Arnold J, King FW, Yeh RF, Fish JE, Hsiao EC, Schwartz RJ, Conklin BR, Bernstein HS, Srivastava D. PMID: 18371447.
      View in: PubMed   Mentions: 239     Fields:    Translation:HumansAnimalsCells
    97. Comparative analysis of wild-type and cAMP-deathless S49 lymphoma cells identifies genes and pathways of cAMP/PKA-promoted apoptosis. The FASEB Journal. 2008 Mar 1; 22:648.13-648.13. Lingzhi Zhang, Alexander C Zambon, Karen Vranizan, Kanishka Pothula, Bruce R Conklin, Paul A Insel. .
      View in: Publisher Site   Mentions:
    98. Osteoblast expression of an engineered Gs-coupled receptor dramatically increases bone mass. Proc Natl Acad Sci U S A. 2008 Jan 29; 105(4):1209-14. Hsiao EC, Boudignon BM, Chang WC, Bencsik M, Peng J, Nguyen TD, Manalac C, Halloran BP, Conklin BR, Nissenson RA. PMID: 18212126.
      View in: PubMed   Mentions: 54     Fields:    Translation:HumansAnimalsCells
    99. Modifying ligand-induced and constitutive signaling of the human 5-HT4 receptor. PLoS One. 2007 Dec 19; 2(12):e1317. Chang WC, Ng JK, Nguyen T, Pellissier L, Claeysen S, Hsiao EC, Conklin BR. PMID: 18338032.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimalsCells
    100. Gene expression signatures of cAMP/protein kinase A (PKA)-promoted, mitochondrial-dependent apoptosis. Comparative analysis of wild-type and cAMP-deathless S49 lymphoma cells. J Biol Chem. 2008 Feb 15; 283(7):4304-13. Zhang L, Zambon AC, Vranizan K, Pothula K, Conklin BR, Insel PA. PMID: 18048352.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCells
    101. Conditional expression of a Gi-coupled receptor in osteoblasts results in trabecular osteopenia. Endocrinology. 2008 Mar; 149(3):1329-37. Peng J, Bencsik M, Louie A, Lu W, Millard S, Nguyen P, Burghardt A, Majumdar S, Wronski TJ, Halloran B, Conklin BR, Nissenson RA. PMID: 18048501.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCells
    102. Engineering the melanocortin-4 receptor to control constitutive and ligand-mediated G(S) signaling in vivo. PLoS One. 2007 Aug 01; 2(7):e668. Srinivasan S, Santiago P, Lubrano C, Vaisse C, Conklin BR. PMID: 17668051.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    103. Modeling insertional mutagenesis using gene length and expression in murine embryonic stem cells. PLoS One. 2007 Jul 18; 2(7):e617. Nord AS, Vranizan K, Tingley W, Zambon AC, Hanspers K, Fong LG, Hu Y, Bacchetti P, Ferrin TE, Babbitt PC, Doniger SW, Skarnes WC, Young SG, Conklin BR. PMID: 17637833.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    104. GenMAPP 2: new features and resources for pathway analysis. BMC Bioinformatics. 2007 Jun 24; 8:217. Salomonis N, Hanspers K, Zambon AC, Vranizan K, Lawlor SC, Dahlquist KD, Doniger SW, Stuart J, Conklin BR, Pico AR. PMID: 17588266.
      View in: PubMed   Mentions: 113     Fields:    Translation:Cells
    105. Canonical Wnt signaling is a positive regulator of mammalian cardiac progenitors. Proc Natl Acad Sci U S A. 2007 Jun 26; 104(26):10894-9. Kwon C, Arnold J, Hsiao EC, Taketo MM, Conklin BR, Srivastava D. PMID: 17576928.
      View in: PubMed   Mentions: 119     Fields:    Translation:AnimalsCells
    106. Interfacing silicon nanowires with mammalian cells. J Am Chem Soc. 2007 Jun 13; 129(23):7228-9. Kim W, Ng JK, Kunitake ME, Conklin BR, Yang P. PMID: 17516647.
      View in: PubMed   Mentions: 87     Fields:    Translation:HumansAnimalsCells
    107. Gene-trapped mouse embryonic stem cell-derived cardiac myocytes and human genetics implicate AKAP10 in heart rhythm regulation. Proc Natl Acad Sci U S A. 2007 May 15; 104(20):8461-6. Tingley WG, Pawlikowska L, Zaroff JG, Kim T, Nguyen T, Young SG, Vranizan K, Kwok PY, Whooley MA, Conklin BR. PMID: 17485678.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansAnimalsCells
    108. New tools to build synthetic hormonal pathways. Proc Natl Acad Sci U S A. 2007 Mar 20; 104(12):4777-8. Conklin BR. PMID: 17360323.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    109. Development of hydrocephalus in mice expressing the G(i)-coupled GPCR Ro1 RASSL receptor in astrocytes. J Neurosci. 2007 Feb 28; 27(9):2309-17. Sweger EJ, Casper KB, Scearce-Levie K, Conklin BR, McCarthy KD. PMID: 17329428.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    110. Integration of biological networks and gene expression data using Cytoscape. Nat Protoc. 2007; 2(10):2366-82. Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. PMID: 17947979.
      View in: PubMed   Mentions: 1034     Fields:    
    111. mGluR2 acts through inhibitory Galpha subunits to regulate transmission and long-term plasticity at hippocampal mossy fiber-CA3 synapses. Proc Natl Acad Sci U S A. 2006 Apr 18; 103(16):6380-5. Nicholls RE, Zhang XL, Bailey CP, Conklin BR, Kandel ER, Stanton PK. PMID: 16606834.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    112. A Series of RASSLs Activated by a Single Agonist. The FASEB Journal. 2006 Mar 1; 20(4):a249-a249. Peter Chang, Edward Hsiao, Alex C Zambon, Bruce R Conklin. .
      View in: Publisher Site   Mentions:
    113. The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse. Nucleic Acids Res. 2006 Jan 01; 34(Database issue):D642-8. Nord AS, Chang PJ, Conklin BR, Cox AV, Harper CA, Hicks GG, Huang CC, Johns SJ, Kawamoto M, Liu S, Meng EC, Morris JH, Rossant J, Ruiz P, Skarnes WC, Soriano P, Stanford WL, Stryke D, von Melchner H, Wurst W, Yamamura K, Young SG, Babbitt PC, Ferrin TE. PMID: 16381950.
      View in: PubMed   Mentions: 61     Fields:    Translation:AnimalsCells
    114. Sustained preconditioning induced by cardiac transgenesis with the tetracycline transactivator. . 2006 Mar; 290(3):H1103-9. Turnbull L, Zhou HZ, Swigart PM, Turcato S, Karliner JS, Conklin BR, Simpson PC, Baker AJ. PMID: 16243914.
      View in: PubMed   Mentions:
    115. Gene expression patterns define key transcriptional events in cell-cycle regulation by cAMP and protein kinase A. Proc Natl Acad Sci U S A. 2005 Jun 14; 102(24):8561-6. Zambon AC, Zhang L, Minovitsky S, Kanter JR, Prabhakar S, Salomonis N, Vranizan K, Dubchak I, Conklin BR, Insel PA. PMID: 15939874.
      View in: PubMed   Mentions: 55     Fields:    Translation:AnimalsCells
    116. Cardiac transgenesis with the tetracycline transactivator changes myocardial function and gene expression. Physiol Genomics. 2005 Jun 16; 22(1):118-26. McCloskey DT, Turnbull L, Swigart PM, Zambon AC, Turcato S, Joho S, Grossman W, Conklin BR, Simpson PC, Baker AJ. PMID: 15797971.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    117. Engineered G protein coupled receptors reveal independent regulation of internalization, desensitization and acute signaling. BMC Biol. 2005 Feb 11; 3:3. Scearce-Levie K, Lieberman MD, Elliott HH, Conklin BR. PMID: 15707483.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    118. Identifying genetic networks underlying myometrial transition to labor. Genome Biol. 2005; 6(2):R12. Salomonis N, Cotte N, Zambon AC, Pollard KS, Vranizan K, Doniger SW, Dolganov G, Conklin BR. PMID: 15693941.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCells
    119. Constitutive activity of the melanocortin-4 receptor is maintained by its N-terminal domain and plays a role in energy homeostasis in humans. J Clin Invest. 2004 Oct; 114(8):1158-64. Srinivasan S, Lubrano-Berthelier C, Govaerts C, Picard F, Santiago P, Conklin BR, Vaisse C. PMID: 15489963.
      View in: PubMed   Mentions: 66     Fields:    Translation:HumansAnimalsCells
    120. A public gene trap resource for mouse functional genomics. Nat Genet. 2004 Jun; 36(6):543-4. Skarnes WC, von Melchner H, Wurst W, Hicks G, Nord AS, Cox T, Young SG, Ruiz P, Soriano P, Tessier-Lavigne M, Conklin BR, Stanford WL, Rossant J, International Gene Trap Consortium . PMID: 15167922.
      View in: PubMed   Mentions: 99     Fields:    Translation:AnimalsCells
    121. Time- and exercise-dependent gene regulation in human skeletal muscle. Genome Biol. 2003; 4(10):R61. Zambon AC, McDearmon EL, Salomonis N, Vranizan KM, Johansen KL, Adey D, Takahashi JS, Schambelan M, Conklin BR. PMID: 14519196.
      View in: PubMed   Mentions: 72     Fields:    Translation:HumansAnimalsCells
    122. Engineering the melanocortin-4 receptor to control G(s) signaling in vivo. Ann N Y Acad Sci. 2003 Jun; 994:225-32. Srinivasan S, Vaisse C, Conklin BR. PMID: 12851320.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    123. MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol. 2003; 4(1):R7. Doniger SW, Salomonis N, Dahlquist KD, Vranizan K, Lawlor SC, Conklin BR. PMID: 12540299.
      View in: PubMed   Mentions: 324     Fields:    Translation:Animals
    124. Regression approaches for microarray data analysis. J Comput Biol. 2003; 10(6):961-80. Segal MR, Dahlquist KD, Conklin BR. PMID: 14980020.
      View in: PubMed   Mentions: 24     Fields:    Translation:Animals
    125. GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways. Nat Genet. 2002 May; 31(1):19-20. Dahlquist KD, Salomonis N, Vranizan K, Lawlor SC, Conklin BR. PMID: 11984561.
      View in: PubMed   Mentions: 323     Fields:    Translation:HumansAnimals
    126. Tools for dissecting signaling pathways in vivo: receptors activated solely by synthetic ligands. Methods Enzymol. 2002; 343:232-48. Scearce-Levie K, Coward P, Redfern CH, Conklin BR. PMID: 11665570.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    127. Engineering receptors activated solely by synthetic ligands (RASSLs). Trends Pharmacol Sci. 2001 Aug; 22(8):414-20. Scearce-Levie K, Coward P, Redfern CH, Conklin BR. PMID: 11479004.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    128. Abnormal contraction caused by expression of G(i)-coupled receptor in transgenic model of dilated cardiomyopathy. . 2001 Apr; 280(4):H1653-9. Baker AJ, Redfern CH, Harwood MD, Simpson PC, Conklin BR. PMID: 11247776.
      View in: PubMed   Mentions:
    129. Tetracycline-inducible system for photoreceptor-specific gene expression. Invest Ophthalmol Vis Sci. 2000 Dec; 41(13):4281-7. Chang MA, Horner JW, Conklin BR, DePinho RA, Bok D, Zack DJ. PMID: 11095627.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    130. Conditional expression of a Gi-coupled receptor causes ventricular conduction delay and a lethal cardiomyopathy. Proc Natl Acad Sci U S A. 2000 Apr 25; 97(9):4826-31. Redfern CH, Degtyarev MY, Kwa AT, Salomonis N, Cotte N, Nanevicz T, Fidelman N, Desai K, Vranizan K, Lee EK, Coward P, Shah N, Warrington JA, Fishman GI, Bernstein D, Baker AJ, Conklin BR. PMID: 10781088.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    131. A critical period of vulnerability to hyperactive Gq signaling revealed by inducible and heart-specific expression of Gq* in transgenic mice. Journal of Cardiac Failure. 1999 Sep 1; 5(3):12. Nathalie Cotte, Charles H. Redfern, Peter Mikus, Nathan Salomonis, Michael Y. Degtyarev, Peter S. Coward, Andrew Kwa, Tetsuo Shioi, Nila Shah, Tim McKinsey, Eric Olson, Seigo Izumo, Janet Warrington, Anthony J. Baker, Bruce R. Conklin. .
      View in: Publisher Site   Mentions:
    132. Genomic analysis of an inducible and reversible model of dilated cardiomyopathy. Journal of Cardiac Failure. 1999 Sep 1; 5(3):14. Charles H. Redfern, Michael Y. Degtyarev, Kavin Desai, Andrew Kwa, Glenn I. Fishman, Daniel Bernstein, Anthony J. Baker, Bruce R. Conklin. .
      View in: Publisher Site   Mentions:
    133. Chimeric G proteins allow a high-throughput signaling assay of Gi-coupled receptors. Anal Biochem. 1999 Jun 01; 270(2):242-8. Coward P, Chan SD, Wada HG, Humphries GM, Conklin BR. PMID: 10334841.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansAnimalsCells
    134. Conditional expression and signaling of a specifically designed Gi-coupled receptor in transgenic mice. Nat Biotechnol. 1999 Feb; 17(2):165-9. Redfern CH, Coward P, Degtyarev MY, Lee EK, Kwa AT, Hennighausen L, Bujard H, Fishman GI, Conklin BR. PMID: 10052353.
      View in: PubMed   Mentions: 56     Fields:    Translation:HumansAnimalsCells
    135. Controlling signaling with a specifically designed Gi-coupled receptor. Proc Natl Acad Sci U S A. 1998 Jan 06; 95(1):352-7. Coward P, Wada HG, Falk MS, Chan SD, Meng F, Akil H, Conklin BR. PMID: 9419379.
      View in: PubMed   Mentions: 88     Fields:    Translation:HumansAnimalsCells
    136. The N-terminal extension of Galphaq is critical for constraining the selectivity of receptor coupling. J Biol Chem. 1997 Aug 01; 272(31):19107-10. Kostenis E, Degtyarev MY, Conklin BR, Wess J. PMID: 9235898.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    137. Molecular basis of receptor/G protein coupling selectivity studied by coexpression of wild type and mutant m2 muscarinic receptors with mutant G alpha(q) subunits. Biochemistry. 1997 Feb 11; 36(6):1487-95. Kostenis E, Conklin BR, Wess J. PMID: 9063897.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimalsCells
    138. Interactions of muscarinic receptors with the heterotrimeric G proteins Gq and G12: transduction of proliferative signals. J Neurochem. 1997 Feb; 68(2):525-33. Burstein ES, Bräuner-Osborne H, Spalding TA, Conklin BR, Brann MR. PMID: 9003037.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    139. Carboxyl-terminal mutations of Gq alpha and Gs alpha that alter the fidelity of receptor activation. Mol Pharmacol. 1996 Oct; 50(4):885-90. Conklin BR, Herzmark P, Ishida S, Voyno-Yasenetskaya TA, Sun Y, Farfel Z, Bourne HR. PMID: 8863834.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansAnimalsCells
    140. Molecular mechanisms involved in muscarinic acetylcholine receptor-mediated G protein activation studied by insertion mutagenesis. J Biol Chem. 1996 Mar 15; 271(11):6172-8. Liu J, Blin N, Conklin BR, Wess J. PMID: 8626406.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    141. Identification of a receptor/G-protein contact site critical for signaling specificity and G-protein activation. Proc Natl Acad Sci U S A. 1995 Dec 05; 92(25):11642-6. Liu J, Conklin BR, Blin N, Yun J, Wess J. PMID: 8524820.
      View in: PubMed   Mentions: 31     Fields:    Translation:AnimalsCells
    142. Coupling of the alpha 2A-adrenergic receptor to multiple G-proteins. A simple approach for estimating receptor-G-protein coupling efficiency in a transient expression system. J Biol Chem. 1994 Feb 25; 269(8):5730-4. Chabre O, Conklin BR, Brandon S, Bourne HR, Limbird LE. PMID: 7907086.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    143. G alpha 13 stimulates Na-H exchange. J Biol Chem. 1994 Feb 18; 269(7):4721-4. Voyno-Yasenetskaya T, Conklin BR, Gilbert RL, Hooley R, Bourne HR, Barber DL. PMID: 8106440.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    144. Homeostatic signals. Marriage of the flytrap and the serpent. Nature. 1994 Jan 06; 367(6458):22. Conklin BR, Bourne HR. PMID: 8107768.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimals
    145. Mouse coat colour reconsidered. Nature. 1993 Jul 08; 364(6433):110. Conklin BR, Bourne HR. PMID: 8321283.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    146. Type II adenylylcyclase integrates coincident signals from Gs, Gi, and Gq. J Biol Chem. 1993 Jul 05; 268(19):13900-5. Lustig KD, Conklin BR, Herzmark P, Taussig R, Bourne HR. PMID: 8390980.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansAnimalsCells
    147. Structural elements of G alpha subunits that interact with G beta gamma, receptors, and effectors. Cell. 1993 May 21; 73(4):631-41. Conklin BR, Bourne HR. PMID: 8388779.
      View in: PubMed   Mentions: 84     Fields:    Translation:AnimalsCells
    148. Substitution of three amino acids switches receptor specificity of Gq alpha to that of Gi alpha. Nature. 1993 May 20; 363(6426):274-6. Conklin BR, Farfel Z, Lustig KD, Julius D, Bourne HR. PMID: 8387644.
      View in: PubMed   Mentions: 171     Fields:    Translation:HumansAnimalsCells
    149. A recombinant calcitonin receptor independently stimulates 3',5'-cyclic adenosine monophosphate and Ca2+/inositol phosphate signaling pathways. Mol Endocrinol. 1992 Apr; 6(4):551-6. Chabre O, Conklin BR, Lin HY, Lodish HF, Wilson E, Ives HE, Catanzariti L, Hemmings BA, Bourne HR. PMID: 1316547.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimalsCells
    150. Hormonal stimulation of adenylyl cyclase through Gi-protein beta gamma subunits. Nature. 1992 Mar 12; 356(6365):159-61. Federman AD, Conklin BR, Schrader KA, Reed RR, Bourne HR. PMID: 1312225.
      View in: PubMed   Mentions: 120     Fields:    Translation:HumansAnimalsCells
    151. Gz-mediated hormonal inhibition of cyclic AMP accumulation. Science. 1992 Jan 17; 255(5042):339-42. Wong YH, Conklin BR, Bourne HR. PMID: 1347957.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    152. Recombinant Gq alpha. Mutational activation and coupling to receptors and phospholipase C. J Biol Chem. 1992 Jan 05; 267(1):31-4. Conklin BR, Chabre O, Wong YH, Federman AD, Bourne HR. PMID: 1309740.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansCells
    153. Detection of coincident signals by G proteins and adenylyl cyclase. Cold Spring Harb Symp Quant Biol. 1992; 57:145-8. Bourne HR, Lustig KD, Wong YH, Conklin BR. PMID: 1339653.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    154. Carbachol-induced reverse transformation of Chinese hamster ovary cells transfected with and expressing the m5 muscarinic acetylcholine receptor. FEBS Lett. 1989 Mar 13; 245(1-2):75-9. Felder CC, Ma AL, Conklin BR. PMID: 2466702.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    155. Stimulation of arachidonic acid release and inhibition of mitogenesis by cloned genes for muscarinic receptor subtypes stably expressed in A9 L cells. Proc Natl Acad Sci U S A. 1988 Nov; 85(22):8698-702. Conklin BR, Brann MR, Buckley NJ, Ma AL, Bonner TI, Axelrod J. PMID: 2847172.
      View in: PubMed   Mentions: 32     Fields:    Translation:AnimalsCells