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Yoshinori Kohwi, PhD

TitleProfessor
SchoolUCSF School of Dentistry
DepartmentOrofacial Sciences
Address513 Parnassus Ave
San Francisco CA 94143
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Hilde KL, Levine AJ, Hinckley CA, Hayashi M, Montgomery JM, Gullo M, Driscoll SP, Grosschedl R, Kohwi Y, Kohwi-Shigematsu T, Pfaff SL. Satb2 Is Required for the Development of a Spinal Exteroceptive Microcircuit that Modulates Limb Position. Neuron. 2016 Aug 17; 91(4):763-76. PMID: 27478017.
      View in: PubMed
    2. Hao B, Naik AK, Watanabe A, Tanaka H, Chen L, Richards HW, Kondo M, Taniuchi I, Kohwi Y, Kohwi-Shigematsu T, Krangel MS. An anti-silencer- and SATB1-dependent chromatin hub regulates Rag1 and Rag2 gene expression during thymocyte development. J Exp Med. 2015 May 4; 212(5):809-24. PMID: 25847946; PMCID: PMC4419350.
      View in: PubMed, PubMed Central
    3. Skowronska-Krawczyk D, Ma Q, Schwartz M, Scully K, Li W, Liu Z, Taylor H, Tollkuhn J, Ohgi KA, Notani D, Kohwi Y, Kohwi-Shigematsu T, Rosenfeld MG. Required enhancer-matrin-3 network interactions for a homeodomain transcription program. Nature. 2014 Oct 9; 514(7521):257-61. PMID: 25119036; PMCID: PMC4358797.
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    4. Ordinario E, Han HJ, Furuta S, Heiser LM, Jakkula LR, Rodier F, Spellman PT, Campisi J, Gray JW, Bissell MJ, Kohwi Y, Kohwi-Shigematsu T. ATM suppresses SATB1-induced malignant progression in breast epithelial cells. PLoS One. 2012; 7(12):e51786. PMID: 23251624; PMCID: PMC3519734.
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    5. Srinivasan K, Leone DP, Bateson RK, Dobreva G, Kohwi Y, Kohwi-Shigematsu T, Grosschedl R, McConnell SK. A network of genetic repression and derepression specifies projection fates in the developing neocortex. Proc Natl Acad Sci U S A. 2012 Nov 20; 109(47):19071-8. PMID: 23144223; PMCID: PMC3511157.
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    6. Kohwi-Shigematsu T, Kohwi Y, Takahashi K, Richards HW, Ayers SD, Han HJ, Cai S. SATB1-mediated functional packaging of chromatin into loops. Methods. 2012 Nov; 58(3):243-54. PMID: 22782115; PMCID: PMC4029128.
      View in: PubMed, PubMed Central
    7. Kohwi-Shigematsu T, Poterlowicz K, Ordinario E, Han HJ, Botchkarev VA, Kohwi Y. Genome organizing function of SATB1 in tumor progression. Semin Cancer Biol. 2013 Apr; 23(2):72-9. PMID: 22771615; PMCID: PMC4048061.
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    8. Balamotis MA, Tamberg N, Woo YJ, Li J, Davy B, Kohwi-Shigematsu T, Kohwi Y. Satb1 ablation alters temporal expression of immediate early genes and reduces dendritic spine density during postnatal brain development. Mol Cell Biol. 2012 Jan; 32(2):333-47. PMID: 22064485; PMCID: PMC3255767.
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    9. Fessing MY, Mardaryev AN, Gdula MR, Sharov AA, Sharova TY, Rapisarda V, Gordon KB, Smorodchenko AD, Poterlowicz K, Ferone G, Kohwi Y, Missero C, Kohwi-Shigematsu T, Botchkarev VA. p63 regulates Satb1 to control tissue-specific chromatin remodeling during development of the epidermis. J Cell Biol. 2011 Sep 19; 194(6):825-39. PMID: 21930775; PMCID: PMC3207288.
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    10. Kohwi-Shigematsu T, Han HJ, Russo J, Kohwi Y. Re: The role of SATB1 in breast cancer pathogenesis. J Natl Cancer Inst. 2010 Dec 15; 102(24):1879-80; author reply 1880-1. PMID: 21076049; PMCID: PMC3001965.
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    11. Russo J, Han HJ, Kohwi Y, Kohwi-Shigematsu T. New advances in breast cancer metastasis. Womens Health (Lond Engl). 2008 Nov; 4(6):547-9. PMID: 19072455; PMCID: PMC2605101.
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    12. Han HJ, Russo J, Kohwi Y, Kohwi-Shigematsu T. SATB1 reprogrammes gene expression to promote breast tumour growth and metastasis. Nature. 2008 Mar 13; 452(7184):187-93. PMID: 18337816.
      View in: PubMed
    13. Yano H, Wang BE, Ahmad I, Zhang J, Abo T, Nakayama J, Krempen K, Kohwi Y. Identification of (CAG)(n) and (CGG)(n) repeat-binding proteins, CAGERs expressed in mature neurons of the mouse brain. Exp Cell Res. 1999 Sep 15; 251(2):388-400. PMID: 10471324.
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    14. Mishmar D, Rahat A, Scherer SW, Nyakatura G, Hinzmann B, Kohwi Y, Mandel-Gutfroind Y, Lee JR, Drescher B, Sas DE, Margalit H, Platzer M, Weiss A, Tsui LC, Rosenthal A, Kerem B. Molecular characterization of a common fragile site (FRA7H) on human chromosome 7 by the cloning of a simian virus 40 integration site. Proc Natl Acad Sci U S A. 1998 Jul 7; 95(14):8141-6. PMID: 9653154; PMCID: PMC20943.
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    15. Kohwi-Shigematsu T, deBelle I, Dickinson LA, Galande S, Kohwi Y. Identification of base-unpairing region-binding proteins and characterization of their in vivo binding sequences. Methods Cell Biol. 1998; 53:323-54. PMID: 9348515.
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    16. Yanagisawa J, Ando J, Nakayama J, Kohwi Y, Kohwi-Shigematsu T. A matrix attachment region (MAR)-binding activity due to a p114 kilodalton protein is found only in human breast carcinomas and not in normal and benign breast disease tissues. Cancer Res. 1996 Feb 1; 56(3):457-62. PMID: 8564952.
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    17. Kohwi Y, Kohwi-Shigematsu T. [Biological significance of nuclear matrix attachment regions (MAR) and tissue specific MAR-DNA binding proteins]. Seikagaku. 1995 Sep; 67(9):1115-27. PMID: 8530869.
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    18. Yano-Yanagisawa H, Li Y, Wang H, Kohwi Y. Single-stranded DNA binding proteins isolated from mouse brain recognize specific trinucleotide repeat sequences in vitro. Nucleic Acids Res. 1995 Jul 25; 23(14):2654-60. PMID: 7651826; PMCID: PMC307089.
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    19. Kladde MP, Kohwi Y, Kohwi-Shigematsu T, Gorski J. The non-B-DNA structure of d(CA/TG)n differs from that of Z-DNA. Proc Natl Acad Sci U S A. 1994 Mar 1; 91(5):1898-902. PMID: 8127902; PMCID: PMC43271.
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    20. Nakagomi K, Kohwi Y, Dickinson LA, Kohwi-Shigematsu T. A novel DNA-binding motif in the nuclear matrix attachment DNA-binding protein SATB1. Mol Cell Biol. 1994 Mar; 14(3):1852-60. PMID: 8114718; PMCID: PMC358543.
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    21. Kohwi Y, Wang H, Kohwi-Shigematsu T. A single trinucleotide, 5'AGC3'/5'GCT3', of the triplet-repeat disease genes confers metal ion-induced non-B DNA structure. Nucleic Acids Res. 1993 Dec 11; 21(24):5651-5. PMID: 8284211; PMCID: PMC310530.
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    22. Kohwi Y, Panchenko Y. Transcription-dependent recombination induced by triple-helix formation. Genes Dev. 1993 Sep; 7(9):1766-78. PMID: 8370525.
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    23. Kohwi Y, Kohwi-Shigematsu T. Structural polymorphism of homopurine-homopyrimidine sequences at neutral pH. J Mol Biol. 1993 Jun 20; 231(4):1090-101. PMID: 8515467.
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    24. Dickinson LA, Joh T, Kohwi Y, Kohwi-Shigematsu T. A tissue-specific MAR/SAR DNA-binding protein with unusual binding site recognition. Cell. 1992 Aug 21; 70(4):631-45. PMID: 1505028.
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    25. Kohwi Y, Malkhosyan SR, Kohwi-Shigematsu T. Intramolecular dG.dG.dC triplex detected in Escherichia coli cells. J Mol Biol. 1992 Feb 20; 223(4):817-22. PMID: 1538396.
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    26. Bode J, Kohwi Y, Dickinson L, Joh T, Klehr D, Mielke C, Kohwi-Shigematsu T. Biological significance of unwinding capability of nuclear matrix-associating DNAs. Science. 1992 Jan 10; 255(5041):195-7. PMID: 1553545.
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    27. Kohwi-Shigematsu T, Kohwi Y. Detection of non-B-DNA structures at specific sites in supercoiled plasmid DNA and chromatin with haloacetaldehyde and diethyl pyrocarbonate. Methods Enzymol. 1992; 212:155-80. PMID: 1518447.
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    28. Kohwi Y, Kohwi-Shigematsu T. Altered gene expression correlates with DNA structure. Genes Dev. 1991 Dec; 5(12B):2547-54. PMID: 1752443.
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    29. Kohwi-Shigematsu T, Kohwi Y. Detection of triple-helix related structures adopted by poly(dG)-poly(dC) sequences in supercoiled plasmid DNA. Nucleic Acids Res. 1991 Aug 11; 19(15):4267-71. PMID: 1870980; PMCID: PMC328572.
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    30. Kohwi-Shigematsu T, Kohwi Y. Torsional stress stabilizes extended base unpairing in suppressor sites flanking immunoglobulin heavy chain enhancer. Biochemistry. 1990 Oct 16; 29(41):9551-60. PMID: 2125477.
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    31. Mielke C, Kohwi Y, Kohwi-Shigematsu T, Bode J. Hierarchical binding of DNA fragments derived from scaffold-attached regions: correlation of properties in vitro and function in vivo. Biochemistry. 1990 Aug 14; 29(32):7475-85. PMID: 2223779.
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    32. Kohwi Y. Non-B DNA structure: preferential target for the chemical carcinogen glycidaldehyde. Carcinogenesis. 1989 Nov; 10(11):2035-42. PMID: 2805227.
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    33. Kohwi Y. Cationic metal-specific structures adopted by the poly(dG) region and the direct repeats in the chicken adult beta A globin gene promoter. Nucleic Acids Res. 1989 Jun 26; 17(12):4493-502. PMID: 2748332; PMCID: PMC318009.
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    34. Kohwi Y, Kohwi-Shigematsu T. Magnesium ion-dependent triple-helix structure formed by homopurine-homopyrimidine sequences in supercoiled plasmid DNA. Proc Natl Acad Sci U S A. 1988 Jun; 85(11):3781-5. PMID: 3375241; PMCID: PMC280302.
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    35. Kohwi-Shigematsu T, Scribner N, Kohwi Y. An ultimate chemical carcinogen, N-acetoxy-2-acetylaminofluorene, detects non-B DNA structures that are reactive with chloroacetaldehyde in supercoiled plasmid DNA. Carcinogenesis. 1988 Mar; 9(3):457-61. PMID: 3345584.
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    36. Kohwi-Shigematsu T, Manes T, Kohwi Y. Unusual conformational effect exerted by Z-DNA upon its neighboring sequences. Proc Natl Acad Sci U S A. 1987 Apr; 84(8):2223-7. PMID: 3470786; PMCID: PMC304621.
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    37. Kohwi-Shigematsu T, Kohwi Y. Poly(dG)-poly(dC) sequences, under torsional stress, induce an altered DNA conformation upon neighboring DNA sequences. Cell. 1985 Nov; 43(1):199-206. PMID: 4075394.
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    38. Kohwi Y, Hellström I, Hakomori S, Hellström KE. Amphipathic lipid-bound protein antigens in mouse bladder carcinomas detected by a monoclonal antibody. Biochemistry. 1984 Dec 4; 23(25):5945-50. PMID: 6395887.
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    39. Kohwi Y, Imai K, Tamura Z, Hashimoto Y. Antitumor effect of Bifidobacterium infantis in mice. Gan. 1978 Oct; 69(5):613-8. PMID: 729960.
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