-
Investigation of hydrogen peroxide yields and oxygen consumption in high dose rate irradiation: a TOPAS-nBio Monte Carlo study. Phys Med Biol. 2024 Dec 10.
Shin WG, D-Kondo JN, Ramos-Mendez JA, LaVerne JA, Rothwell BC, Bertolet A, McNamara A, Faddegon BA, Paganetti H, Schuemann J. PMID: 39657326.
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PubMed Mentions: Fields:
-
Modeling the oxygen effect in DNA strand break induced by gamma-rays with TOPAS-nBio. Phys Med Biol. 2024 Oct 25; 69(21).
D-Kondo N, Masilela TAM, Shin WG, Faddegon B, LaVerne J, Schuemann J, Ramos-Mendez J. PMID: 39413818.
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PubMed Mentions: Fields:
-
TOPAS-Tissue: A Framework for the Simulation of the Biological Response to Ionizing Radiation at the Multi-Cellular Level. Int J Mol Sci. 2024 Sep 19; 25(18).
García García OR, Ortiz R, Moreno-Barbosa E, D-Kondo N, Faddegon B, Ramos-Méndez J. PMID: 39337547; PMCID: PMC11431975.
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PubMed Mentions: Fields:
Translation:
HumansCells
-
A framework for in-field and out-of-field patient specific secondary cancer risk estimates from treatment plans using the TOPAS Monte Carlo system. Phys Med Biol. 2024 Aug 06; 69(16).
Meyer I, Peters N, Tamborino G, Lee H, Bertolet A, Faddegon B, Mille MM, Lee C, Schuemann J, Paganetti H. PMID: 39019051; PMCID: PMC11345907.
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PubMed Mentions: Fields:
Translation:
Humans
-
An interface tool to parametrize treatment plans for the TrueBeam radiotherapy system into TOPAS parameter control files for Monte Carlo simulation. Phys Med. 2024 Aug; 124:104485.
Ortiz R, Sawkey D, Faddegon B, D-Kondo N, Ramos-Méndez J. PMID: 39059251; PMCID: PMC11323898.
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PubMed Mentions: Fields:
Translation:
Humans
-
Lithium inelastic cross-sections and their impact on micro and nano dosimetry of boron neutron capture. Phys Med Biol. 2024 Jul 15; 69(14).
D-Kondo N, Ortiz R, Faddegon B, Incerti S, Tran HN, Francis Z, Moreno Barbosa E, Schuemann J, Ramos-Méndez J. PMID: 38964312; PMCID: PMC11271803.
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PubMed Mentions: Fields:
-
TOPAS simulation of photoneutrons in radiotherapy: accuracy and speed with variance reduction. Phys Med Biol. 2024 May 14; 69(11).
Ramos-Mendez J, Ortiz CR, Schuemann J, Paganetti H, Faddegon B. PMID: 38657630; PMCID: PMC467037.
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PubMed Mentions:
1 Fields:
Translation:
Humans
-
Creating uniform cluster dose spread-out Bragg peaks for proton and carbon beams. Med Phys. 2024 Jun; 51(6):4482-4488.
Ortiz R, Faddegon B. PMID: 38376446; PMCID: PMC467039.
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PubMed Mentions: Fields:
-
A digital male pelvis phantom series showing anatomical variations over the course of fractionated radiotherapy treatment. Med Phys. 2024 Apr; 51(4):3034-3044.
Faddegon B, Descovich M, Chen K, Ramos-Méndez J, Iii MR, Wahl N, Taylor P, Griffin K, Lee C. PMID: 38071746.
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PubMed Mentions: Fields:
Translation:
Humans
-
Ionization detail parameters and cluster dose: a mathematical model for selection of nanodosimetric quantities for use in treatment planning in charged particle radiotherapy. Phys Med Biol. 2023 08 14; 68(17).
Faddegon B, Blakely EA, Burigo L, Censor Y, Dokic I, Domínguez Kondo N, Ortiz R, Ramos Méndez J, Rucinski A, Schubert K, Wahl N, Schulte R. PMID: 37489619; PMCID: PMC10565507.
View in:
PubMed Mentions:
7 Fields:
Translation:
Cells
-
An integrated Monte Carlo track-structure simulation framework for modeling inter and intra-track effects on homogenous chemistry. Phys Med Biol. 2023 Jun 09; 68(12).
D-Kondo JN, Garcia-Garcia OR, LaVerne JA, Faddegon B, Schuemann J, Shin WG, Ramos-Méndez J. PMID: 37201533; PMCID: PMC10355172.
View in:
PubMed Mentions:
4 Fields:
Translation:
Cells
-
TOPAS-imaging: extensions to the TOPAS simulation toolkit for medical imaging systems. Phys Med Biol. 2023 04 03; 68(8).
Lee H, Cheon BW, Feld JW, Grogg K, Perl J, Ramos-Méndez JA, Faddegon B, Min CH, Paganetti H, Schuemann J. PMID: 36930985; PMCID: PMC10164408.
View in:
PubMed Mentions:
1 Fields:
Translation:
Humans
-
Impact of DNA Geometry and Scoring on Monte Carlo Track-Structure Simulations of Initial Radiation-Induced Damage. Radiat Res. 2022 09 01; 198(3):207-220.
Bertolet A, Ramos-Méndez J, McNamara A, Yoo D, Ingram S, Henthorn N, Warmenhoven JW, Faddegon B, Merchant M, McMahon SJ, Paganetti H, Schuemann J. PMID: 35767729; PMCID: PMC9458623.
View in:
PubMed Mentions:
6 Fields:
-
TOPAS-nBio simulation of temperature-dependent indirect DNA strand break yields. Phys Med Biol. 2022 07 08; 67(14).
Ramos-Méndez J, García-García O, Domínguez-Kondo J, LaVerne JA, Schuemann J, Moreno-Barbosa E, Faddegon B. PMID: 35714599; PMCID: PMC9512025.
View in:
PubMed Mentions:
5 Fields:
-
DNA damage modeled with Geant4-DNA: effects of plasmid DNA conformation and experimental conditions. Phys Med Biol. 2021 12 15; 66(24).
D-Kondo N, Moreno-Barbosa E, Štephán V, Stefanová K, Perrot Y, Villagrasa C, Incerti S, De Celis Alonso B, Schuemann J, Faddegon B, Ramos-Méndez J. PMID: 34787099; PMCID: PMC9765991.
View in:
PubMed Mentions:
5 Fields:
Translation:
Cells
-
TOPAS-nBio validation for simulating water radiolysis and DNA damage under low-LET irradiation. Phys Med Biol. 2021 09 03; 66(17).
Ramos-Méndez J, LaVerne JA, Domínguez-Kondo N, Milligan J, Štepán V, Stefanová K, Perrot Y, Villagrasa C, Shin WG, Incerti S, McNamara A, Paganetti H, Perl J, Schuemann J, Faddegon B. PMID: 34412044; PMCID: PMC8639218.
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PubMed Mentions:
11 Fields:
Translation:
Cells
-
Publisher's Note: "Dispersion calibration for the National Ignition Facility electron-positron-proton spectrometers for intense laser matter interactions" [Rev. Sci. Instrum. 92, 033516 (2021)]. Rev Sci Instrum. 2021 May 01; 92(5):059902.
von der Linden J, Ramos-Mendez J, Faddegon B, Massin D, Fiksel G, Holder JP, Willingale L, Peebles J, Edwards MR, Chen H. PMID: 34243233.
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PubMed Mentions: Fields:
-
Dispersion calibration for the National Ignition Facility electron-positron-proton spectrometers for intense laser matter interactions. Rev Sci Instrum. 2021 Mar 01; 92(3):033516.
von der Linden J, Ramos-Méndez J, Faddegon B, Massin D, Fiksel G, Holder JP, Willingale L, Peebles J, Edwards MR, Chen H. PMID: 33820046.
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PubMed Mentions: Fields:
-
Assessment of DNA damage with an adapted independent reaction time approach implemented in Geant4-DNA for the simulation of diffusion-controlled reactions between radio-induced reactive species and a chromatin fiber. Med Phys. 2021 Feb; 48(2):890-901.
Tran HN, Ramos-Méndez J, Shin WG, Perrot Y, Faddegon B, Okada S, Karamitros M, Davídková M, Štepán V, Incerti S, Villagrasa C. PMID: 33232522; PMCID: PMC7986154.
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PubMed Mentions:
6 Fields:
Translation:
Cells
-
Report on G4-Med, a Geant4 benchmarking system for medical physics applications developed by the Geant4 Medical Simulation Benchmarking Group. Med Phys. 2021 Jan; 48(1):19-56.
Arce P, Bolst D, Bordage MC, Brown JMC, Cirrone P, Cortés-Giraldo MA, Cutajar D, Cuttone G, Desorgher L, Dondero P, Dotti A, Faddegon B, Fedon C, Guatelli S, Incerti S, Ivanchenko V, Konstantinov D, Kyriakou I, Latyshev G, Le A, Mancini-Terracciano C, Maire M, Mantero A, Novak M, Omachi C, Pandola L, Perales A, Perrot Y, Petringa G, Quesada JM, Ramos-Méndez J, Romano F, Rosenfeld AB, Sarmiento LG, Sakata D, Sasaki T, Sechopoulos I, Simpson EC, Toshito T, Wright DH. PMID: 32392626; PMCID: PMC8054528.
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PubMed Mentions:
25 Fields:
-
Independent reaction times method in Geant4-DNA: Implementation and performance. Med Phys. 2020 Nov; 47(11):5919-5930.
Ramos-Méndez J, Shin WG, Karamitros M, Domínguez-Kondo J, Tran NH, Incerti S, Villagrasa C, Perrot Y, Štepán V, Okada S, Moreno-Barbosa E, Faddegon B. PMID: 32970844; PMCID: PMC7891885.
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PubMed Mentions:
17 Fields:
Translation:
Cells
-
LET-Dependent Intertrack Yields in Proton Irradiation at Ultra-High Dose Rates Relevant for FLASH Therapy. Radiat Res. 2020 10 02; 194(4):351-362.
Ramos-Méndez J, Domínguez-Kondo N, Schuemann J, McNamara A, Moreno-Barbosa E, Faddegon B. PMID: 32857855; PMCID: PMC7644138.
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PubMed Mentions:
21 Fields:
Translation:
HumansCells
-
A Millimeter-scale Single Charged Particle Dosimeter for Cancer Radiotherapy. IEEE J Solid-State Circuits. 2020 Nov; 55(11):2947-2958.
Lee K, Scholey J, Norman EB, Daftari IK, Mishra KK, Faddegon BA, Maharbiz MM, Anwar M. PMID: 33281206; PMCID: PMC7709948.
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PubMed Mentions:
-
Monte Carlo track-structure for the radionuclide Copper-64: characterization of S-values, nanodosimetry and quantification of direct damage to DNA. Phys Med Biol. 2020 07 27; 65(15):155005.
Carrasco-Hernández J, Ramos-Méndez J, Faddegon B, Jalilian AR, Moranchel M, Ávila-Rodríguez MA. PMID: 32303013; PMCID: PMC7757752.
View in:
PubMed Mentions:
4 Fields:
-
Cellular Response to Proton Irradiation: A Simulation Study with TOPAS-nBio. Radiat Res. 2020 07 08; 194(1):9-21.
Zhu H, McNamara AL, McMahon SJ, Ramos-Mendez J, Henthorn NT, Faddegon B, Held KD, Perl J, Li J, Paganetti H, Schuemann J. PMID: 32401689; PMCID: PMC7484135.
View in:
PubMed Mentions:
20 Fields:
Translation:
HumansCells
-
A parameter sensitivity study for simulating DNA damage after proton irradiation using TOPAS-nBio. Phys Med Biol. 2020 04 23; 65(8):085015.
Zhu H, McNamara AL, Ramos-Mendez J, McMahon SJ, Henthorn NT, Faddegon B, Held KD, Perl J, Li J, Paganetti H, Schuemann J. PMID: 32101803; PMCID: PMC7748977.
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PubMed Mentions:
13 Fields:
Translation:
Cells
-
The TOPAS tool for particle simulation, a Monte Carlo simulation tool for physics, biology and clinical research. Phys Med. 2020 Apr; 72:114-121.
Faddegon B, Ramos-Méndez J, Schuemann J, McNamara A, Shin J, Perl J, Paganetti H. PMID: 32247964; PMCID: PMC7192305.
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PubMed Mentions:
50 Fields:
Translation:
Humans
-
Beam modeling and beam model commissioning for Monte Carlo dose calculation-based radiation therapy treatment planning: Report of AAPM Task Group 157. Med Phys. 2020 Jan; 47(1):e1-e18.
Ma CMC, Chetty IJ, Deng J, Faddegon B, Jiang SB, Li J, Seuntjens J, Siebers JV, Traneus E. PMID: 31679157.
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PubMed Mentions:
15 Fields:
-
Three discipline collaborative radiation therapy (3DCRT) special debate: The United States needs at least one carbon ion facility. J Appl Clin Med Phys. 2019 Nov; 20(11):6-13.
Blakely EA, Faddegon B, Tinkle C, Bloch C, Dominello M, Griffin RJ, Joiner MC, Burmeister J. PMID: 31573146; PMCID: PMC6839391.
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PubMed Mentions:
3 Fields:
Translation:
Humans
-
Monte Carlo Processing on a Chip (MCoaC)-preliminary experiments toward the realization of optimal-hardware for TOPAS/Geant4 to drive discovery. Phys Med. 2019 Aug; 64:166-173.
Abhyankar YS, Dev S, Sarun OS, Saxena A, Joshi R, Darbari H, Sajish C, Sonavane UB, Gavane V, Deshpande A, Dixit T, Harsh R, Badwe R, Rath GK, Laskar S, Faddegon B, Perl J, Paganetti H, Schuemann J, Srivastava A, Obcemea C, Nath AK, Sharma A, Buchsbaum J. PMID: 31515016; PMCID: PMC7238758.
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PubMed Mentions:
1 Fields:
-
The microdosimetric extension in TOPAS: development and comparison with published data. Phys Med Biol. 2019 07 11; 64(14):145004.
Zhu H, Chen Y, Sung W, McNamara AL, Tran LT, Burigo LN, Rosenfeld AB, Li J, Faddegon B, Schuemann J, Paganetti H. PMID: 31117056; PMCID: PMC7182072.
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PubMed Mentions:
5 Fields:
Translation:
Humans
-
TOPAS-nBio: An Extension to the TOPAS Simulation Toolkit for Cellular and Sub-cellular Radiobiology. Radiat Res. 2019 02; 191(2):125-138.
Schuemann J, McNamara AL, Ramos-Méndez J, Perl J, Held KD, Paganetti H, Incerti S, Faddegon B. PMID: 30609382; PMCID: PMC6377808.
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PubMed Mentions:
69 Fields:
Translation:
HumansCells
-
Simultaneous optimization of RBE-weighted dose and nanometric ionization distributions in treatment planning with carbon ions. Phys Med Biol. 2019 01 04; 64(1):015015.
Burigo LN, Ramos-Méndez J, Bangert M, Schulte RW, Faddegon B. PMID: 30523890; PMCID: PMC7164666.
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PubMed Mentions:
3 Fields:
Translation:
Humans
-
Fast calculation of nanodosimetric quantities in treatment planning of proton and ion therapy. Phys Med Biol. 2018 Nov 28; 63(23):235015.
Ramos-Méndez J, Burigo LN, Schulte R, Chuang C, Faddegon B. PMID: 30484432; PMCID: PMC8691449.
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PubMed Mentions:
9 Fields:
Translation:
Humans
-
A New Standard DNA Damage (SDD) Data Format. Radiat Res. 2019 01; 191(1):76-92.
Schuemann J, McNamara AL, Warmenhoven JW, Henthorn NT, Kirkby KJ, Merchant MJ, Ingram S, Paganetti H, Held KD, Ramos-Mendez J, Faddegon B, Perl J, Goodhead DT, Plante I, Rabus H, Nettelbeck H, Friedland W, Kundrát P, Ottolenghi A, Baiocco G, Barbieri S, Dingfelder M, Incerti S, Villagrasa C, Bueno M, Bernal MA, Guatelli S, Sakata D, Brown JMC, Francis Z, Kyriakou I, Lampe N, Ballarini F, Carante MP, Davídková M, Štepán V, Jia X, Cucinotta FA, Schulte R, Stewart RD, Carlson DJ, Galer S, Kuncic Z, Lacombe S, Milligan J, Cho SH, Sawakuchi G, Inaniwa T, Sato T, Li W, Solov'yov AV, Surdutovich E, Durante M, Prise KM, McMahon SJ. PMID: 30407901; PMCID: PMC6407706.
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PubMed Mentions:
28 Fields:
Translation:
Cells
-
Clinical trials involving carbon-ion radiation therapy and the path forward. Cancer. 2018 12 01; 124(23):4467-4476.
Lazar AA, Schulte R, Faddegon B, Blakely EA, Roach M. PMID: 30307603; PMCID: PMC6540799.
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PubMed Mentions:
22 Fields:
Translation:
Humans
-
Geometrical structures for radiation biology research as implemented in the TOPAS-nBio toolkit. Phys Med Biol. 2018 09 06; 63(17):175018.
McNamara AL, Ramos-Méndez J, Perl J, Held K, Dominguez N, Moreno E, Henthorn NT, Kirkby KJ, Meylan S, Villagrasa C, Incerti S, Faddegon B, Paganetti H, Schuemann J. PMID: 30088810; PMCID: PMC6176684.
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PubMed Mentions:
23 Fields:
Translation:
Humans
-
Helium CT: Monte Carlo simulation results for an ideal source and detector with comparison to proton CT. Med Phys. 2018 Jul; 45(7):3264-3274.
Piersimoni P, Faddegon BA, Méndez JR, Schulte RW, Volz L, Seco J. PMID: 29727481; PMCID: PMC8145780.
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PubMed Mentions:
6 Fields:
-
Monte Carlo simulation of chemistry following radiolysis with TOPAS-nBio. Phys Med Biol. 2018 05 17; 63(10):105014.
Ramos-Méndez J, Perl J, Schuemann J, McNamara A, Paganetti H, Faddegon B. PMID: 29697057; PMCID: PMC6027650.
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PubMed Mentions:
35 Fields:
Translation:
HumansCells
-
Flagged uniform particle splitting for variance reduction in proton and carbon ion track-structure simulations. Phys Med Biol. 2017 Jul 06; 62(15):5908-5925.
Ramos-Méndez J, Schuemann J, Incerti S, Paganetti H, Schulte R, Faddegon B. PMID: 28594336; PMCID: PMC5785278.
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PubMed Mentions:
7 Fields:
Translation:
Humans
-
The effect of beam purity and scanner complexity on proton CT accuracy. Med Phys. 2017 Jan; 44(1):284-298.
Piersimoni P, Ramos-Méndez J, Geoghegan T, Bashkirov VA, Schulte RW, Faddegon BA. PMID: 28066887; PMCID: PMC5362942.
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PubMed Mentions:
9 Fields:
-
Validation of the radiobiology toolkit TOPAS-nBio in simple DNA geometries. Phys Med. 2017 Jan; 33:207-215.
McNamara A, Geng C, Turner R, Mendez JR, Perl J, Held K, Faddegon B, Paganetti H, Schuemann J. PMID: 28017738; PMCID: PMC5292291.
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PubMed Mentions:
29 Fields:
Translation:
Cells
-
Technical Note: Preferred dosimeter size and associated correction factors in commissioning high dose per pulse, flattening filter free x-ray beams. Med Phys. 2016 Mar; 43(3):1507-13.
Sudhyadhom A, Kirby N, Faddegon B, Chuang CF. PMID: 26936734.
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PubMed Mentions:
4 Fields:
-
New Clinical and Research Programs in Particle Beam Radiation Therapy: The University of California San Francisco Perspective. Int J Part Ther. 2016; 2(3):471-473.
Roach M, Schulte R, Mishra K, Faddegon B, Barani I, Lazar A, Blakely EA. PMID: 27099866; PMCID: PMC4834449.
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PubMed Mentions:
4
-
Dose assessment for the fetus considering scattered and secondary radiation from photon and proton therapy when treating a brain tumor of the mother. Phys Med Biol. 2016 Jan 21; 61(2):683-95.
Geng C, Moteabbed M, Seco J, Gao Y, Xu XG, Ramos-Méndez J, Faddegon B, Paganetti H. PMID: 26716718.
View in:
PubMed Mentions:
11 Fields:
Translation:
Humans
-
Experimental depth dose curves of a 67.5 MeV proton beam for benchmarking and validation of Monte Carlo simulation. Med Phys. 2015 Jul; 42(7):4199-210.
Faddegon BA, Shin J, Castenada CM, Ramos-Méndez J, Daftari IK. PMID: 26133619; PMCID: PMC4474955.
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PubMed Mentions:
5 Fields:
Translation:
PHPublic Health
-
Extension of TOPAS for the simulation of proton radiation effects considering molecular and cellular endpoints. Phys Med Biol. 2015 Jul 07; 60(13):5053-70.
Polster L, Schuemann J, Rinaldi I, Burigo L, McNamara AL, Stewart RD, Attili A, Carlson DJ, Sato T, Ramos Méndez J, Faddegon B, Perl J, Paganetti H. PMID: 26061666; PMCID: PMC4511084.
View in:
PubMed Mentions:
25 Fields:
Translation:
HumansAnimalsCells
-
Improved efficiency in Monte Carlo simulation for passive-scattering proton therapy. Phys Med Biol. 2015 Jul 07; 60(13):5019-35.
Méndez JR, Perl J, Schümann J, Shin J, Paganetti H, Faddegon B. PMID: 26061457; PMCID: PMC4498399.
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PubMed Mentions:
3 Fields:
-
A framework for implementation of organ effect models in TOPAS with benchmarks extended to proton therapy. Phys Med Biol. 2015 Jul 07; 60(13):5037-52.
Ramos-Méndez J, Perl J, Schümann J, Shin J, Paganetti H, Faddegon B. PMID: 26061583; PMCID: PMC4498397.
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PubMed Mentions:
2 Fields:
-
TH2-Polarized CD4(+) T Cells and Macrophages Limit Efficacy of Radiotherapy. Cancer Immunol Res. 2015 May; 3(5):518-25.
Shiao SL, Ruffell B, DeNardo DG, Faddegon BA, Park CC, Coussens LM. PMID: 25716473; PMCID: PMC4420686.
View in:
PubMed Mentions:
137 Fields:
Translation:
AnimalsCells
-
Experimental validation of the TOPAS Monte Carlo system for passive scattering proton therapy. Med Phys. 2013 Dec; 40(12):121719.
Testa M, Schümann J, Lu HM, Shin J, Faddegon B, Perl J, Paganetti H. PMID: 24320505; PMCID: PMC4109425.
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PubMed Mentions:
36 Fields:
Translation:
Humans
-
Geometrical splitting technique to improve the computational efficiency in Monte Carlo calculations for proton therapy. Med Phys. 2013 Apr; 40(4):041718.
Ramos-Méndez J, Perl J, Faddegon B, Schümann J, Paganetti H. PMID: 23556888; PMCID: PMC3618101.
View in:
PubMed Mentions:
15 Fields:
Translation:
Humans
-
TOPAS: an innovative proton Monte Carlo platform for research and clinical applications. Med Phys. 2012 Nov; 39(11):6818-37.
Perl J, Shin J, Schumann J, Faddegon B, Paganetti H. PMID: 23127075; PMCID: PMC3493036.
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PubMed Mentions:
248 Fields:
Translation:
Humans
-
Genetically mediated Nf1 loss in mice promotes diverse radiation-induced tumors modeling second malignant neoplasms. Cancer Res. 2012 Dec 15; 72(24):6425-34.
Choi G, Huang B, Pinarbasi E, Braunstein SE, Horvai AE, Kogan S, Bhatia S, Faddegon B, Nakamura JL. PMID: 23071067; PMCID: PMC3787120.
View in:
PubMed Mentions:
16 Fields:
Translation:
Animals
-
SU-E-T-500: Pencil-Beam versus Monte Carlo Based Dose Calculation for Proton Therapy Patients with Complex Geometries. Clinical Use of the TOPAS Monte Carlo System. Med Phys. 2012 Jun; 39(6Part18):3820.
Schuemann J, Shin J, Perl J, Grassberger C, Verburg J, Faddegon B, Paganetti H. PMID: 28518479.
View in:
PubMed Mentions:
3 Fields:
-
SU-E-T-478: Geometrical Splitting Technique to Improve the Computational Efficiency in Monte Carlo Calculations for Proton Therapy. Med Phys. 2012 Jun; 39(6Part17):3815.
Ramos-Mendez J, Perl J, Faddegon B, Paganetti H. PMID: 28517444.
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PubMed Mentions: Fields:
-
SU-E-T-473: Performance Assessment of the TOPAS Tool for Particle Simulation for Proton Therapy Applications. Med Phys. 2012 Jun; 39(6Part17):3814.
Perl J, Shin J, Schuemann J, Faddegon B, Paganetti H. PMID: 28517451.
View in:
PubMed Mentions: Fields:
-
Efficient voxel navigation for proton therapy dose calculation in TOPAS and Geant4. Phys Med Biol. 2012 Jun 07; 57(11):3281-93.
Schümann J, Paganetti H, Shin J, Faddegon B, Perl J. PMID: 22572154; PMCID: PMC3367506.
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PubMed Mentions:
22 Fields:
Translation:
Humans
-
A modular method to handle multiple time-dependent quantities in Monte Carlo simulations. Phys Med Biol. 2012 Jun 07; 57(11):3295-308.
Shin J, Perl J, Schümann J, Paganetti H, Faddegon BA. PMID: 22572201; PMCID: PMC4477630.
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PubMed Mentions:
11 Fields:
-
Sensitivity analysis of an asymmetric Monte Carlo beam model of a Siemens Primus accelerator. J Appl Clin Med Phys. 2012 Mar 08; 13(2):3402.
Schreiber EC, Sawkey DL, Faddegon BA. PMID: 22402376; PMCID: PMC5716413.
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PubMed Mentions:
2 Fields:
Translation:
Humans
-
Characterization of an extendable multi-leaf collimator for clinical electron beams. Phys Med Biol. 2011 Dec 07; 56(23):7621-38.
O'Shea TP, Ge Y, Foley MJ, Faddegon BA. PMID: 22086242.
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PubMed Mentions:
2 Fields:
Translation:
Humans
-
Study of intensity-modulated photon-electron radiation therapy using digital phantoms. Phys Med Biol. 2011 Oct 21; 56(20):6693-708.
Ge Y, Faddegon BA. PMID: 21965269.
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PubMed Mentions:
1 Fields:
-
Accounting for the fringe magnetic field from the bending magnet in a Monte Carlo accelerator treatment head simulation. Med Phys. 2011 Jun; 38(6):3260-9.
O'Shea TP, Foley MJ, Faddegon BA. PMID: 21815400.
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PubMed Mentions: Fields:
Translation:
Humans
-
Dose-dependent effects of focal fractionated irradiation on secondary malignant neoplasms in Nf1 mutant mice. Cancer Res. 2011 Jan 01; 71(1):106-15.
Nakamura JL, Phong C, Pinarbasi E, Kogan SC, Vandenberg S, Horvai AE, Faddegon BA, Fiedler D, Shokat K, Houseman BT, Chao R, Pieper RO, Shannon K. PMID: 21199799; PMCID: PMC3077533.
View in:
PubMed Mentions:
18 Fields:
Translation:
AnimalsCells
-
Practical quantitative measurement of graticule misalignment relative to collimator axis of rotation. J Appl Clin Med Phys. 2010 Aug 15; 11(4):3318.
Halabi T, Faddegon B. PMID: 21081892; PMCID: PMC5720415.
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PubMed Mentions:
2 Fields:
Translation:
Humans
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Monte Carlo commissioning of clinical electron beams using large field measurements. Phys Med Biol. 2010 Jul 21; 55(14):4083-105.
O'Shea TP, Sawkey DL, Foley MJ, Faddegon BA. PMID: 20601775.
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3 Fields:
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Comparison of patient megavoltage cone beam CT images acquired with an unflattened beam from a carbon target and a flattened treatment beam. Med Phys. 2010 Apr; 37(4):1737-41.
Faddegon BA, Aubin M, Bani-Hashemi A, Gangadharan B, Gottschalk AR, Morin O, Sawkey D, Wu V, Yom SS. PMID: 20443494.
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8 Fields:
Translation:
Humans
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A diamond target for megavoltage cone-beam CT. Med Phys. 2010 Mar; 37(3):1246-53.
Sawkey D, Lu M, Morin O, Aubin M, Yom SS, Gottschalk AR, Bani-Hashemi A, Faddegon BA. PMID: 20384262.
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3 Fields:
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Fast, accurate photon beam accelerator modeling using BEAMnrc: a systematic investigation of efficiency enhancing methods and cross-section data. Med Phys. 2009 Dec; 36(12):5451-66.
Fragoso M, Kawrakow I, Faddegon BA, Solberg TD, Chetty IJ. PMID: 20095258; PMCID: PMC2787063.
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5 Fields:
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Simulation of large x-ray fields using independently measured source and geometry details. Med Phys. 2009 Dec; 36(12):5622-32.
Sawkey D, Faddegon BA. PMID: 20095275; PMCID: PMC2792331.
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PubMed Mentions:
6 Fields:
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Treatment head disassembly to improve the accuracy of large electron field simulation. Med Phys. 2009 Oct; 36(10):4577-91.
Faddegon BA, Sawkey D, O'Shea T, McEwen M, Ross C. PMID: 19928089; PMCID: PMC2771714.
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2 Fields:
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The accuracy of EGSnrc, Geant4 and PENELOPE Monte Carlo systems for the simulation of electron scatter in external beam radiotherapy. Phys Med Biol. 2009 Oct 21; 54(20):6151-63.
Faddegon BA, Kawrakow I, Kubyshin Y, Perl J, Sempau J, Urban L. PMID: 19779217; PMCID: PMC3462739.
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22 Fields:
Translation:
Humans
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Validation of the final aperture superposition technique to calculate electron output factors and depth dose curves. Med Phys. 2009 Aug; 36(8):3397-405.
Chen J, Irion J, Faddegon BA. PMID: 19746772.
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Humans
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Image quality & dosimetric property of an investigational imaging beam line MV-CBCT. J Appl Clin Med Phys. 2009 Jun 17; 10(3):37-48.
Beltran C, Lukose R, Gangadharan B, Bani-Hashemi A, Faddegon BA. PMID: 19692984; PMCID: PMC5720554.
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PubMed Mentions:
18 Fields:
Translation:
Humans
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Determination of electron energy, spectral width, and beam divergence at the exit window for clinical megavoltage x-ray beams. Med Phys. 2009 Mar; 36(3):698-707.
Sawkey DL, Faddegon BA. PMID: 19378730; PMCID: PMC2673678.
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PubMed Mentions:
10 Fields:
Translation:
Humans
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Low dose megavoltage cone beam computed tomography with an unflattened 4 MV beam from a carbon target. Med Phys. 2008 Dec; 35(12):5777-86.
Faddegon BA, Wu V, Pouliot J, Gangadharan B, Bani-Hashemi A. PMID: 19175135.
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PubMed Mentions:
30 Fields:
Translation:
Humans
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Algorithm for X-ray scatter, beam-hardening, and beam profile correction in diagnostic (kilovoltage) and treatment (megavoltage) cone beam CT. IEEE Trans Med Imaging. 2008 Dec; 27(12):1791-810.
Maltz JS, Gangadharan B, Bose S, Hristov DH, Faddegon BA, Paidi A, Bani-Hashemi AR. PMID: 19033095.
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PubMed Mentions:
14 Fields:
Translation:
Humans
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Benchmarking of Monte Carlo simulation of bremsstrahlung from thick targets at radiotherapy energies. Med Phys. 2008 Oct; 35(10):4308-17.
Faddegon BA, Asai M, Perl J, Ross C, Sempau J, Tinslay J, Salvat F. PMID: 18975676; PMCID: PMC2736754.
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13 Fields:
Translation:
Cells
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Measurement of multiple scattering of 13 and 20 MeV electrons by thin foils. Med Phys. 2008 Sep; 35(9):4121-31.
Ross CK, McEwen MR, McDonald AF, Cojocaru CD, Faddegon BA. PMID: 18841865; PMCID: PMC2673663.
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PubMed Mentions:
6 Fields:
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Sci-Fri PM: Planning-01: Measured electron and x-ray angular distribution data for benchmarking Monte Carlo codes. Med Phys. 2008 Jul; 35(7Part3):3412.
Cojocaru CD, Ross CK, McEwen MR, McDonald AF, Faddegon BA. PMID: 28512874; PMCID: PMC7986574.
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Focused beam-stop array for the measurement of scatter in megavoltage portal and cone beam CT imaging. Med Phys. 2008 Jun; 35(6):2452-62.
Maltz JS, Gangadharan B, Vidal M, Paidi A, Bose S, Faddegon BA, Aubin M, Morin O, Pouliot J, Zheng Z, Svatos MM, Bani-Hashemi AR. PMID: 18649478.
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PubMed Mentions:
10 Fields:
Translation:
HumansCells
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Prototyping a large field size IORT applicator for a mobile linear accelerator. Phys Med Biol. 2008 Apr 21; 53(8):2089-102.
Janssen RW, Faddegon BA, Dries WJ. PMID: 18369280.
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PubMed Mentions:
3 Fields:
Translation:
Humans
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Monte Carlo simulation of large electron fields. Phys Med Biol. 2008 Mar 07; 53(5):1497-510.
Faddegon BA, Perl J, Asai M. PMID: 18296775; PMCID: PMC2900835.
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8 Fields:
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Report of the AAPM Task Group No. 105: Issues associated with clinical implementation of Monte Carlo-based photon and electron external beam treatment planning. Med Phys. 2007 Dec; 34(12):4818-53.
Chetty IJ, Curran B, Cygler JE, DeMarco JJ, Ezzell G, Faddegon BA, Kawrakow I, Keall PJ, Liu H, Ma CM, Rogers DW, Seuntjens J, Sheikh-Bagheri D, Siebers JV. PMID: 18196810.
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PubMed Mentions:
174 Fields:
Translation:
Humans
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Response of intracerebral human glioblastoma xenografts to multifraction radiation exposures. Int J Radiat Oncol Biol Phys. 2006 Sep 01; 66(1):263-70.
Ozawa T, Faddegon BA, Hu LJ, Bollen AW, Lamborn KR, Deen DF. PMID: 16904526.
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PubMed Mentions:
14 Fields:
Translation:
HumansAnimalsCells
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A pulse-rate dependence of dose per monitor unit and its significant effect on wedged-shaped fields delivered with variable dose rate and a moving jaw. Med Phys. 2006 Aug; 33(8):3063-5.
Faddegon BA, Garde E. PMID: 16964884.
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1 Fields:
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Intraoperative radiation therapy using mobile electron linear accelerators: report of AAPM Radiation Therapy Committee Task Group No. 72. Med Phys. 2006 May; 33(5):1476-89.
Beddar AS, Biggs PJ, Chang S, Ezzell GA, Faddegon BA, Hensley FW, Mills MD. PMID: 16752582.
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PubMed Mentions:
27 Fields:
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Final Aperture Superposition Technique applied to fast calculation of electron output factors and depth dose curves. Med Phys. 2005 Nov; 32(11):3286-94.
Faddegon BA, Villarreal-Barajas JE. PMID: 16370417.
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PubMed Mentions:
1 Fields:
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Monte Carlo simulation of large electron fields. Phys Med Biol. 2005 Mar 07; 50(5):741-53.
Faddegon B, Schreiber E, Ding X. PMID: 15798251.
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8 Fields:
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Sensitivity of large-field electron beams to variations in a Monte Carlo accelerator model. Phys Med Biol. 2005 Mar 07; 50(5):769-78.
Schreiber EC, Faddegon BA. PMID: 15798253.
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7 Fields:
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A comparison of Monte Carlo and Fermi-Eyges-Hogstrom estimates of heart and lung dose from breast electron boost treatment. Int J Radiat Oncol Biol Phys. 2005 Feb 01; 61(2):621-8.
Coleman J, Park C, Villarreal-Barajas JE, Petti P, Faddegon B. PMID: 15667984.
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3 Fields:
Translation:
Humans
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Dosimetry of a prototype retractable eMLC for fixed-beam electron therapy. Med Phys. 2004 Mar; 31(3):443-62.
Hogstrom KR, Boyd RA, Antolak JA, Svatos MM, Faddegon BA, Rosenman JG. PMID: 15070241.
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19 Fields:
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Comparison of beam characteristics of a gold x-ray target and a tungsten replacement target. Med Phys. 2004 Jan; 31(1):91-7.
Faddegon B, Egley B, Steinberg T. PMID: 14761025.
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PubMed Mentions:
2 Fields:
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Description and dosimetric verification of the PEREGRINE Monte Carlo dose calculation system for photon beams incident on a water phantom. Med Phys. 2001 Jul; 28(7):1322-37.
Hartmann Siantar CL, Walling RS, Daly TP, Faddegon B, Albright N, Bergstrom P, Bielajew AF, Chuang C, Garrett D, House RK, Knapp D, Wieczorek DJ, Verhey LJ. PMID: 11488562.
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PubMed Mentions:
21 Fields:
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Electron spectra derived from depth dose distributions. Med Phys. 2000 Mar; 27(3):514-26.
Faddegon BA, Blevis I. PMID: 10757603.
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PubMed Mentions:
2 Fields:
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The flatness of Siemens linear accelerator x-ray fields. Med Phys. 1999 Feb; 26(2):220-8.
Faddegon BA, O'Brien P, Mason DL. PMID: 10076978.
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PubMed Mentions:
4 Fields:
Translation:
HumansCells
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Megavoltage imaging with low Z targets: implementation and characterization of an investigational system. Med Phys. 1998 Oct; 25(10):1910-8.
Ostapiak OZ, O'Brien PF, Faddegon BA. PMID: 9800698.
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11 Fields:
Translation:
Humans
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Accurate characterization of Monte Carlo calculated electron beams for radiotherapy. Med Phys. 1997 Mar; 24(3):401-16.
Ma CM, Faddegon BA, Rogers DW, Mackie TR. PMID: 9089592.
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PubMed Mentions:
12 Fields:
Translation:
Humans
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Monte Carlo based phase-space evolution for electron dose calculation. Med Phys. 1997 Feb; 24(2):177-87.
Scora D, Faddegon BA. PMID: 9048357.
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PubMed Mentions: Fields:
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Calculation of x-ray spectra for radiosurgical beams. Med Phys. 1995 Oct; 22(10):1657-61.
Sixel KE, Faddegon BA. PMID: 8551991.
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PubMed Mentions:
10 Fields:
Translation:
Humans
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BEAM: a Monte Carlo code to simulate radiotherapy treatment units. Med Phys. 1995 May; 22(5):503-24.
Rogers DW, Faddegon BA, Ding GX, Ma CM, We J, Mackie TR. PMID: 7643786.
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PubMed Mentions:
194 Fields:
Translation:
Humans
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Angular distribution of bremsstrahlung from 15-MeV electrons incident on thick targets of Be, Al, and Pb. Med Phys. 1991 Jul-Aug; 18(4):727-39.
Faddegon BA, Ross CK, Rogers DW. PMID: 1921878.
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6 Fields:
Translation:
Humans
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Forward-directed bremsstrahlung of 10- to 30-MeV electrons incident on thick targets of Al and Pb. Med Phys. 1990 Sep-Oct; 17(5):773-85.
Faddegon BA, Ross CK, Rogers DW. PMID: 2233563.
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5 Fields:
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Computer aided design and verification of megavoltage tissue compensators for oblique beams. Med Phys. 1988 Sep-Oct; 15(5):757-62.
Faddegon BA, Pfalzner P. PMID: 3141758.
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Humans
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The effect of misonidazole as a hypoxic radiosensitizer at low dose. Radiat Res. 1984 Nov; 100(2):340-7.
Palcic B, Faddegon B, Skarsgard LD. PMID: 6494445.
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PubMed Mentions:
1 Fields:
Translation:
AnimalsCells