Nariman Naber, PhD

Title(s)Research Biochemist, Biochemistry and Biophysics
SchoolSchool of Medicine
Address600 16th St
San Francisco CA 94158
Phone415-476-1975
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. The role of the super-relaxed state of myosin in human metabolism. Metabol Open. 2021 Mar; 9:100068. Wilson C, Naber N, Cooke R. PMID: 33364594; PMCID: PMC7753139.
      View in: PubMed   Mentions: 2  
    2. Piperine, an alkaloid inhibiting the super-relaxed state of myosin, binds to the myosin regulatory light chain. Arch Biochem Biophys. 2018 12 01; 659:75-84. Tolkatchev D, Elnatan D, Nogara L, Ly T, Naber N, Haak K, Meech R, Cooke R, Kostyukova AS. PMID: 30287237; PMCID: PMC6699511.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    3. Piperine's mitigation of obesity and diabetes can be explained by its up-regulation of the metabolic rate of resting muscle. Proc Natl Acad Sci U S A. 2016 11 15; 113(46):13009-13014. Nogara L, Naber N, Pate E, Canton M, Reggiani C, Cooke R. PMID: 27799519; PMCID: PMC5135373.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    4. Spectroscopic Studies of the Super Relaxed State of Skeletal Muscle. PLoS One. 2016; 11(8):e0160100. Nogara L, Naber N, Pate E, Canton M, Reggiani C, Cooke R. PMID: 27479128; PMCID: PMC4968846.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    5. A novel N-terminal extension in mitochondrial TRAP1 serves as a thermal regulator of chaperone activity. Elife. 2014 Dec 22; 3. Partridge JR, Lavery LA, Elnatan D, Naber N, Cooke R, Agard DA. PMID: 25531069; PMCID: PMC4381864.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    6. The myosin inhibitor blebbistatin stabilizes the super-relaxed state in skeletal muscle. Biophys J. 2014 Oct 07; 107(7):1637-46. Wilson C, Naber N, Pate E, Cooke R. PMID: 25296316; PMCID: PMC4190596.
      View in: PubMed   Mentions: 42     Fields:    Translation:AnimalsCells
    7. The histone H4 tail regulates the conformation of the ATP-binding pocket in the SNF2h chromatin remodeling enzyme. J Mol Biol. 2014 May 15; 426(10):2034-44. Racki LR, Naber N, Pate E, Leonard JD, Cooke R, Narlikar GJ. PMID: 24607692; PMCID: PMC4059342.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    8. A conformational switch in HP1 releases auto-inhibition to drive heterochromatin assembly. Nature. 2013 Apr 18; 496(7445):377-81. Canzio D, Liao M, Naber N, Pate E, Larson A, Wu S, Marina DB, Garcia JF, Madhani HD, Cooke R, Schuck P, Cheng Y, Narlikar GJ. PMID: 23485968; PMCID: PMC3907283.
      View in: PubMed   Mentions: 76     Fields:    Translation:AnimalsCells
    9. Conformational changes at the nucleotide site in the presence of bound ADP do not set the velocity of fast Drosophila myosins. J Muscle Res Cell Motil. 2013 Feb; 34(1):35-42. Eldred CC, Naber N, Pate E, Cooke R, Swank DM. PMID: 23203294; PMCID: PMC3552063.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    10. The loop 5 element structurally and kinetically coordinates dimers of the human kinesin-5, Eg5. Biophys J. 2011 Dec 07; 101(11):2760-9. Waitzman JS, Larson AG, Cochran JC, Naber N, Cooke R, Jon Kull F, Pate E, Rice SE. PMID: 22261065; PMCID: PMC3297777.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansCells
    11. Analysis of the interaction of the Eg5 Loop5 with the nucleotide site. J Theor Biol. 2011 Nov 21; 289:107-15. Harrington TD, Naber N, Larson AG, Cooke R, Rice SE, Pate E. PMID: 21872609; PMCID: PMC3191284.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    12. Slow myosin ATP turnover in the super-relaxed state in tarantula muscle. J Mol Biol. 2011 Sep 02; 411(5):943-50. Naber N, Cooke R, Pate E. PMID: 21763701; PMCID: PMC3156359.
      View in: PubMed   Mentions: 42     Fields:    Translation:AnimalsCells
    13. EPR spectra and molecular dynamics agree that the nucleotide pocket of myosin V is closed and that it opens on binding actin. J Mol Biol. 2011 Aug 05; 411(1):16-26. Purcell TJ, Naber N, Sutton S, Cooke R, Pate E. PMID: 21640122; PMCID: PMC3143297.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    14. Multiple conformations of the nucleotide site of Kinesin family motors in the triphosphate state. J Mol Biol. 2011 May 13; 408(4):628-42. Naber N, Larson A, Rice S, Cooke R, Pate E. PMID: 21277856; PMCID: PMC4262519.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    15. Nucleotide pocket thermodynamics measured by EPR reveal how energy partitioning relates myosin speed to efficiency. J Mol Biol. 2011 Mar 18; 407(1):79-91. Purcell TJ, Naber N, Franks-Skiba K, Dunn AR, Eldred CC, Berger CL, Málnási-Csizmadia A, Spudich JA, Swank DM, Pate E, Cooke R. PMID: 21185304; PMCID: PMC3347976.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    16. The conserved L5 loop establishes the pre-powerstroke conformation of the Kinesin-5 motor, eg5. Biophys J. 2010 Jun 02; 98(11):2619-27. Larson AG, Naber N, Cooke R, Pate E, Rice SE. PMID: 20513406; PMCID: PMC2877332.
      View in: PubMed   Mentions: 22     Fields:    Translation:Cells
    17. Combining EPR with fluorescence spectroscopy to monitor conformational changes at the myosin nucleotide pocket. J Mol Biol. 2010 Mar 05; 396(4):937-48. Naber N, Málnási-Csizmadia A, Purcell TJ, Cooke R, Pate E. PMID: 20036250.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    18. The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes. Nature. 2009 Dec 24; 462(7276):1016-21. Racki LR, Yang JG, Naber N, Partensky PD, Acevedo A, Purcell TJ, Cooke R, Cheng Y, Narlikar GJ. PMID: 20033039; PMCID: PMC2869534.
      View in: PubMed   Mentions: 98     Fields:    Translation:HumansAnimalsCells
    19. The fate of free radicals in a cellulose based hydrogel: detection by electron paramagnetic resonance spectroscopy. J Pharm Sci. 2009 Jul; 98(7):2464-71. Basumallick L, Ji JA, Naber N, Wang YJ. PMID: 19090570.
      View in: PubMed   Mentions: 3     Fields:    
    20. The Kinesin-1 tail conformationally restricts the nucleotide pocket. Biophys J. 2009 Apr 08; 96(7):2799-807. Wong YL, Dietrich KA, Naber N, Cooke R, Rice SE. PMID: 19348763; PMCID: PMC2711265.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    21. Structural dynamics of the actomyosin complex probed by a bifunctional spin label that cross-links SH1 and SH2. Biophys J. 2008 Dec; 95(11):5238-46. Thompson AR, Naber N, Wilson C, Cooke R, Thomas DD. PMID: 18805936; PMCID: PMC2586570.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    22. Dynamics of the nucleotide pocket of myosin measured by spin-labeled nucleotides. Biophys J. 2007 Jan 01; 92(1):172-84. Naber N, Purcell TJ, Pate E, Cooke R. PMID: 17028139; PMCID: PMC1697850.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    23. Conformational variations in an infectious protein determine prion strain differences. Nature. 2004 Mar 18; 428(6980):323-8. Tanaka M, Chien P, Naber N, Cooke R, Weissman JS. PMID: 15029196.
      View in: PubMed   Mentions: 385     Fields:    Translation:AnimalsCells
    24. Closing of the nucleotide pocket of kinesin-family motors upon binding to microtubules. Science. 2003 May 02; 300(5620):798-801. Naber N, Minehardt TJ, Rice S, Chen X, Grammer J, Matuska M, Vale RD, Kollman PA, Car R, Yount RG, Cooke R, Pate E. PMID: 12730601.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimalsCells
    25. EPR spectroscopy shows a microtubule-dependent conformational change in the kinesin switch 1 domain. Biophys J. 2003 May; 84(5):3190-6. Naber N, Rice S, Matuska M, Vale RD, Cooke R, Pate E. PMID: 12719248; PMCID: PMC1302879.
      View in: PubMed   Mentions: 17     Fields:    Translation:Cells
    26. Two conformations in the human kinesin power stroke defined by X-ray crystallography and EPR spectroscopy. Nat Struct Biol. 2002 Nov; 9(11):844-8. Sindelar CV, Budny MJ, Rice S, Naber N, Fletterick R, Cooke R. PMID: 12368902.
      View in: PubMed   Mentions: 60     Fields:    Translation:Cells
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