Sandy Johnson, PHD

Title(s)Professor, Microbiology and Immunology
SchoolSchool of Medicine
Address600 16th Street, #N372D
San Francisco CA 94158
Phone415-502-7196
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    Collapse Overview 

    Collapse Research 
    Collapse Research Activities and Funding
    The transcriptional circuitry controlling biofilm development in Candida albicans
    NIH R01AI083311Jul 1, 2009 - Nov 30, 2020
    Role: Principal Investigator
    Chromosome loss in the fungal pathogen C. albicans
    NIH R01AI059401Mar 15, 2004 - Feb 28, 2010
    Role: Principal Investigator
    Regulatory Circuits and Virulence in Candida albicans
    NIH R01AI049187Mar 1, 2001 - Nov 30, 2016
    Role: Principal Investigator
    TRANSCRIPTIONAL REGULATION IN GROWTH,DIFF,DEVELOPMENT
    NIH R13HD038716Aug 4, 2000 - Jul 31, 2001
    Role: Principal Investigator
    Comprehensive Biology: Exploiting the Yeast Genome
    NIH P41RR011823Sep 30, 1996 - Jun 30, 2016
    Role: Co-Investigator
    CHROMOSOME POSITION EFFECTS ON GENE EXPRESSION IN YEAST
    NIH R01GM053452Sep 30, 1995 - Mar 31, 2000
    Role: Principal Investigator
    MEIOTIC PAIRING OF CHROMOSOMES IN YEAST
    NIH R01GM044532Apr 1, 1991 - Mar 31, 1994
    Role: Principal Investigator
    Mechanism of Yeast Transcriptional Regulators
    NIH R01GM037049Aug 1, 1986 - Mar 31, 2019
    Role: Principal Investigator
    Cell Biology, Genetics, and Biochemistry Training Grant
    NIH T32GM007810Jul 1, 1979 - Jun 30, 2021
    Role: Principal Investigator
    Molecular Biology of Eukaryotic Cells and Viruses
    NIH T32CA009270Sep 1, 1976 - Jun 30, 2006
    Role: Principal Investigator
    DNA-PROTEIN INTERACTIONS IN DNA-REPLICATION CONTROL
    NIH R01GM024020Sep 1, 1976 - Aug 31, 1996
    Role: Principal Investigator

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    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Variation in transcription regulator expression underlies differences in white-opaque switching between the SC5314 reference strain and the majority of Candida albicans clinical isolates. Genetics. 2023 11 01; 225(3). Lohse MB, Ziv N, Johnson AD. PMID: 37811798; PMCID: PMC10627253.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    2. Broad susceptibility of Candida auris strains to 8-hydroxyquinolines and mechanisms of resistance. mBio. 2023 08 31; 14(4):e0137623. Lohse MB, Laurie MT, Levan S, Ziv N, Ennis CL, Nobile CJ, DeRisi J, Johnson AD. PMID: 37493629; PMCID: PMC10470496.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    3. Ancient transcriptional regulators can easily evolve new pair-wise cooperativity. Proc Natl Acad Sci U S A. 2023 07 11; 120(28):e2302445120. Fowler KR, Leon F, Johnson AD. PMID: 37399378; PMCID: PMC10334809.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    4. Evolution of a new form of haploid-specific gene regulation appearing in a limited clade of ascomycete yeast species. Genetics. 2023 05 26; 224(2). Del Frate F, Garber ME, Johnson AD. PMID: 37119800; PMCID: PMC10484167.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    5. Cell-type memory in a single-cell eukaryote requires the continuous presence of a specific transcription regulator. Proc Natl Acad Sci U S A. 2023 05 23; 120(21):e2220568120. Lee CD, Ziv N, Johnson AD. PMID: 37186823; PMCID: PMC10214202.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    6. Broad sensitivity of Candida auris strains to quinolones and mechanisms of resistance. bioRxiv. 2023 Feb 17. Lohse MB, Laurie MT, Levan S, Ziv N, Ennis CL, Nobile CJ, DeRisi J, Johnson AD. PMID: 36824717; PMCID: PMC9949084.
      View in: PubMed   Mentions:
    7. Farnesol and phosphorylation of the transcriptional regulator Efg1 affect Candida albicans white-opaque switching rates. PLoS One. 2023; 18(1):e0280233. Brenes LR, Johnson AD, Lohse MB. PMID: 36662710; PMCID: PMC9858334.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    8. Evolution of the complex transcription network controlling biofilm formation in Candida species. Elife. 2021 04 07; 10. Mancera E, Nocedal I, Hammel S, Gulati M, Mitchell KF, Andes DR, Nobile CJ, Butler G, Johnson AD. PMID: 33825680; PMCID: PMC8075579.
      View in: PubMed   Mentions: 16     Fields:    Translation:Animals
    9. Lineage-specific selection and the evolution of virulence in the Candida clade. Proc Natl Acad Sci U S A. 2021 03 23; 118(12). Singh-Babak SD, Babak T, Fraser HB, Johnson AD. PMID: 33723044; PMCID: PMC8000421.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    10. A Screen for Small Molecules to Target Candida albicans Biofilms. J Fungi (Basel). 2020 Dec 27; 7(1). Lohse MB, Ennis CL, Hartooni N, Johnson AD, Nobile CJ. PMID: 33375490; PMCID: PMC7824004.
      View in: PubMed   Mentions: 2  
    11. An Opaque Cell-Specific Expression Program of Secreted Proteases and Transporters Allows Cell-Type Cooperation in Candida albicans. Genetics. 2020 10; 216(2):409-429. Lohse MB, Brenes LR, Ziv N, Winter MB, Craik CS, Johnson AD. PMID: 32839241; PMCID: PMC7536846.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    12. A Set of Diverse Genes Influence the Frequency of White-Opaque Switching in Candida albicans. G3 (Bethesda). 2020 08 05; 10(8):2593-2600. Brenes LR, Lohse MB, Hartooni N, Johnson AD. PMID: 32487674; PMCID: PMC7407467.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    13. Combination of Antifungal Drugs and Protease Inhibitors Prevent Candida albicans Biofilm Formation and Disrupt Mature Biofilms. Front Microbiol. 2020; 11:1027. Lohse MB, Gulati M, Craik CS, Johnson AD, Nobile CJ. PMID: 32523574; PMCID: PMC7261846.
      View in: PubMed   Mentions: 17  
    14. A Selective Serotonin Reuptake Inhibitor, a Proton Pump Inhibitor, and Two Calcium Channel Blockers Inhibit Candida albicans Biofilms. Microorganisms. 2020 May 18; 8(5). Nobile CJ, Ennis CL, Hartooni N, Johnson AD, Lohse MB. PMID: 32443498; PMCID: PMC7285287.
      View in: PubMed   Mentions: 7  
    15. Corrigendum: Genetic Modification of Closely Related Candida Species. Front Microbiol. 2020; 11:713. Mancera E, Frazer C, Porman AM, Ruiz-Castro S, Johnson AD, Bennett RJ. PMID: 32351495; PMCID: PMC7174835.
      View in: PubMed   Mentions:
    16. Protein-coding changes preceded cis-regulatory gains in a newly evolved transcription circuit. Science. 2020 01 03; 367(6473):96-100. Britton CS, Sorrells TR, Johnson AD. PMID: 31896718; PMCID: PMC8284397.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    17. A population shift between two heritable cell types of the pathogen Candida albicans is based both on switching and selective proliferation. Proc Natl Acad Sci U S A. 2019 Dec 26; 116(52):26918-26924. Dalal CK, Zuleta IA, Lohse MB, Zordan RE, El-Samad H, Johnson AD. PMID: 31822605; PMCID: PMC6936367.
      View in: PubMed   Mentions: 6     Fields:    
    18. Candida albicans white and opaque cells exhibit distinct spectra of organ colonization in mouse models of infection. PLoS One. 2019; 14(6):e0218037. Takagi J, Singh-Babak SD, Lohse MB, Dalal CK, Johnson AD. PMID: 31170229; PMCID: PMC6553767.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    19. Genetic Modification of Closely Related Candida Species. Front Microbiol. 2019; 10:357. Mancera E, Frazer C, Porman AM, Ruiz-Castro S, Johnson AD, Bennett RJ. PMID: 30941104; PMCID: PMC6433835.
      View in: PubMed   Mentions: 6  
    20. Intrinsic cooperativity potentiates parallel cis-regulatory evolution. Elife. 2018 09 10; 7. Sorrells TR, Johnson AN, Howard CJ, Britton CS, Fowler KR, Feigerle JT, Weil PA, Johnson AD. PMID: 30198843; PMCID: PMC6173580.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    21. The rewiring of transcription circuits in evolution. Curr Opin Genet Dev. 2017 Dec; 47:121-127. Johnson AD. PMID: 29120735; PMCID: PMC6901287.
      View in: PubMed   Mentions: 19     Fields:    Translation:Cells
    22. Development and regulation of single- and multi-species Candida albicans biofilms. Nat Rev Microbiol. 2018 Jan; 16(1):19-31. Lohse MB, Gulati M, Johnson AD, Nobile CJ. PMID: 29062072; PMCID: PMC5726514.
      View in: PubMed   Mentions: 203     Fields:    Translation:HumansAnimals
    23. Sensitivity of White and Opaque Candida albicans Cells to Antifungal Drugs. Antimicrob Agents Chemother. 2017 08; 61(8). Craik VB, Johnson AD, Lohse MB. PMID: 28507115; PMCID: PMC5527646.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    24. How transcription circuits explore alternative architectures while maintaining overall circuit output. Genes Dev. 2017 07 15; 31(14):1397-1405. Dalal CK, Johnson AD. PMID: 28860157; PMCID: PMC5588923.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    25. Assessment and Optimizations of Candida albicans In Vitro Biofilm Assays. Antimicrob Agents Chemother. 2017 05; 61(5). Lohse MB, Gulati M, Valle Arevalo A, Fishburn A, Johnson AD, Nobile CJ. PMID: 28289028; PMCID: PMC5404589.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimals
    26. Gene regulatory network plasticity predates a switch in function of a conserved transcription regulator. Elife. 2017 03 22; 6. Nocedal I, Mancera E, Johnson AD. PMID: 28327289; PMCID: PMC5391208.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    27. Sex differences in vascular dysfunction and cardiovascular outcomes: The cardiac, endothelial function, and arterial stiffness in ESRD (CERES) study. Hemodial Int. 2018 01; 22(1):93-102. Guajardo I, Ayer A, Johnson AD, Ganz P, Mills C, Donovan C, Scherzer R, Shah SJ, Peralta CA, Dubin RF. PMID: 28272770.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    28. Phenotypic Profiling Reveals that Candida albicans Opaque Cells Represent a Metabolically Specialized Cell State Compared to Default White Cells. mBio. 2016 11 22; 7(6). Ene IV, Lohse MB, Vladu AV, Morschhäuser J, Johnson AD, Bennett RJ. PMID: 27879329; PMCID: PMC5120136.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    29. Global Identification of Biofilm-Specific Proteolysis in Candida albicans. mBio. 2016 09 13; 7(5). Winter MB, Salcedo EC, Lohse MB, Hartooni N, Gulati M, Sanchez H, Takagi J, Hube B, Andes DR, Johnson AD, Craik CS, Nobile CJ. PMID: 27624133; PMCID: PMC5021810.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    30. Transcriptional rewiring over evolutionary timescales changes quantitative and qualitative properties of gene expression. Elife. 2016 09 10; 5. Dalal CK, Zuleta IA, Mitchell KF, Andes DR, El-Samad H, Johnson AD. PMID: 27614020; PMCID: PMC5067116.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansAnimalsCells
    31. Systematic Genetic Screen for Transcriptional Regulators of the Candida albicans White-Opaque Switch. Genetics. 2016 08; 203(4):1679-92. Lohse MB, Ene IV, Craik VB, Hernday AD, Mancera E, Morschhäuser J, Bennett RJ, Johnson AD. PMID: 27280690; PMCID: PMC4981270.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansAnimals
    32. Ssn6 Defines a New Level of Regulation of White-Opaque Switching in Candida albicans and Is Required For the Stochasticity of the Switch. mBio. 2016 Jan 26; 7(1):e01565-15. Hernday AD, Lohse MB, Nobile CJ, Noiman L, Laksana CN, Johnson AD. PMID: 26814177; PMCID: PMC4742700.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    33. Identification and Characterization of Wor4, a New Transcriptional Regulator of White-Opaque Switching. G3 (Bethesda). 2016 Jan 15; 6(3):721-9. Lohse MB, Johnson AD. PMID: 26772749; PMCID: PMC4777133.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    34. How Transcription Networks Evolve and Produce Biological Novelty. Cold Spring Harb Symp Quant Biol. 2015; 80:265-74. Nocedal I, Johnson AD. PMID: 26657905.
      View in: PubMed   Mentions: 13     Fields:    Translation:Animals
    35. N-Acetylglucosamine-Induced Cell Death in Candida albicans and Its Implications for Adaptive Mechanisms of Nutrient Sensing in Yeasts. mBio. 2015 Sep 08; 6(5):e01376-15. Du H, Guan G, Li X, Gulati M, Tao L, Cao C, Johnson AD, Nobile CJ, Huang G. PMID: 26350972; PMCID: PMC4600118.
      View in: PubMed   Mentions: 22     Fields:    Translation:Animals
    36. Intersecting transcription networks constrain gene regulatory evolution. Nature. 2015 Jul 16; 523(7560):361-5. Sorrells TR, Booth LN, Tuch BB, Johnson AD. PMID: 26153861; PMCID: PMC4531262.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    37. Making sense of transcription networks. Cell. 2015 May 07; 161(4):714-23. Sorrells TR, Johnson AD. PMID: 25957680; PMCID: PMC4531093.
      View in: PubMed   Mentions: 63     Fields:    Translation:AnimalsCells
    38. Destructin-1 is a collagen-degrading endopeptidase secreted by Pseudogymnoascus destructans, the causative agent of white-nose syndrome. Proc Natl Acad Sci U S A. 2015 Jun 16; 112(24):7478-83. O'Donoghue AJ, Knudsen GM, Beekman C, Perry JA, Johnson AD, DeRisi JL, Craik CS, Bennett RJ. PMID: 25944934; PMCID: PMC4475985.
      View in: PubMed   Mentions: 40     Fields:    Translation:AnimalsCells
    39. An expanded regulatory network temporally controls Candida albicans biofilm formation. Mol Microbiol. 2015 Jun; 96(6):1226-39. Fox EP, Bui CK, Nett JE, Hartooni N, Mui MC, Andes DR, Nobile CJ, Johnson AD. PMID: 25784162; PMCID: PMC4464956.
      View in: PubMed   Mentions: 88     Fields:    Translation:Animals
    40. Finding a Missing Gene: EFG1 Regulates Morphogenesis in Candida tropicalis. G3 (Bethesda). 2015 Mar 09; 5(5):849-56. Mancera E, Porman AM, Cuomo CA, Bennett RJ, Johnson AD. PMID: 25758825; PMCID: PMC4426371.
      View in: PubMed   Mentions: 21     Fields:    Translation:Animals
    41. Candida albicans Biofilms and Human Disease. Annu Rev Microbiol. 2015; 69:71-92. Nobile CJ, Johnson AD. PMID: 26488273; PMCID: PMC4930275.
      View in: PubMed   Mentions: 360     Fields:    Translation:HumansAnimals
    42. Mucins suppress virulence traits of Candida albicans. mBio. 2014 Nov 11; 5(6):e01911. Kavanaugh NL, Zhang AQ, Nobile CJ, Johnson AD, Ribbeck K. PMID: 25389175; PMCID: PMC4235211.
      View in: PubMed   Mentions: 56     Fields:    Translation:HumansAnimals
    43. Ancestral resurrection reveals evolutionary mechanisms of kinase plasticity. Elife. 2014 Oct 13; 3. Howard CJ, Hanson-Smith V, Kennedy KJ, Miller CJ, Lou HJ, Johnson AD, Turk BE, Holt LJ. PMID: 25310241; PMCID: PMC4228266.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansAnimalsCells
    44. Anaerobic bacteria grow within Candida albicans biofilms and induce biofilm formation in suspension cultures. Curr Biol. 2014 Oct 20; 24(20):2411-6. Fox EP, Cowley ES, Nobile CJ, Hartooni N, Newman DK, Johnson AD. PMID: 25308076; PMCID: PMC4252622.
      View in: PubMed   Mentions: 93     Fields:    Translation:AnimalsCells
    45. Structure of a new DNA-binding domain which regulates pathogenesis in a wide variety of fungi. Proc Natl Acad Sci U S A. 2014 Jul 22; 111(29):10404-10. Lohse MB, Rosenberg OS, Cox JS, Stroud RM, Finer-Moore JS, Johnson AD. PMID: 24994900; PMCID: PMC4115540.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    46. A histone deacetylase complex mediates biofilm dispersal and drug resistance in Candida albicans. mBio. 2014 Jun 10; 5(3):e01201-14. Nobile CJ, Fox EP, Hartooni N, Mitchell KF, Hnisz D, Andes DR, Kuchler K, Johnson AD. PMID: 24917598; PMCID: PMC4056552.
      View in: PubMed   Mentions: 41     Fields:    Translation:HumansAnimals
    47. How duplicated transcription regulators can diversify to govern the expression of nonoverlapping sets of genes. Genes Dev. 2014 Jun 15; 28(12):1272-7. Pérez JC, Fordyce PM, Lohse MB, Hanson-Smith V, DeRisi JL, Johnson AD. PMID: 24874988; PMCID: PMC4066398.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimalsCells
    48. Regulatory circuits that enable proliferation of the fungus Candida albicans in a mammalian host. PLoS Pathog. 2013; 9(12):e1003780. Pérez JC, Johnson AD. PMID: 24385896; PMCID: PMC3868511.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimals
    49. Following gene duplication, paralog interference constrains transcriptional circuit evolution. Science. 2013 Oct 04; 342(6154):104-8. Baker CR, Hanson-Smith V, Johnson AD. PMID: 24092741; PMCID: PMC3911913.
      View in: PubMed   Mentions: 61     Fields:    Translation:AnimalsCells
    50. Structure of the transcriptional network controlling white-opaque switching in Candida albicans. Mol Microbiol. 2013 Oct; 90(1):22-35. Hernday AD, Lohse MB, Fordyce PM, Nobile CJ, DeRisi JL, Johnson AD. PMID: 23855748; PMCID: PMC3888361.
      View in: PubMed   Mentions: 88     Fields:    Translation:HumansAnimalsCells
    51. Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains. Proc Natl Acad Sci U S A. 2013 May 07; 110(19):7660-5. Lohse MB, Hernday AD, Fordyce PM, Noiman L, Sorrells TR, Hanson-Smith V, Nobile CJ, DeRisi JL, Johnson AD. PMID: 23610392; PMCID: PMC3651432.
      View in: PubMed   Mentions: 53     Fields:    Translation:AnimalsCells
    52. Genetic control of conventional and pheromone-stimulated biofilm formation in Candida albicans. PLoS Pathog. 2013; 9(4):e1003305. Lin CH, Kabrawala S, Fox EP, Nobile CJ, Johnson AD, Bennett RJ. PMID: 23637598; PMCID: PMC3630098.
      View in: PubMed   Mentions: 57     Fields:    Translation:AnimalsCells
    53. White-opaque switching in natural MTLa/α isolates of Candida albicans: evolutionary implications for roles in host adaptation, pathogenesis, and sex. PLoS Biol. 2013; 11(3):e1001525. Xie J, Tao L, Nobile CJ, Tong Y, Guan G, Sun Y, Cao C, Hernday AD, Johnson AD, Zhang L, Bai FY, Huang G. PMID: 23555196; PMCID: PMC3608550.
      View in: PubMed   Mentions: 73     Fields:    Translation:AnimalsCells
    54. Candida albicans commensalism and pathogenicity are intertwined traits directed by a tightly knit transcriptional regulatory circuit. PLoS Biol. 2013; 11(3):e1001510. Pérez JC, Kumamoto CA, Johnson AD. PMID: 23526879; PMCID: PMC3601966.
      View in: PubMed   Mentions: 82     Fields:    Translation:HumansAnimals
    55. Candida albicans white and opaque cells undergo distinct programs of filamentous growth. PLoS Pathog. 2013 Mar; 9(3):e1003210. Si H, Hernday AD, Hirakawa MP, Johnson AD, Bennett RJ. PMID: 23505370; PMCID: PMC3591317.
      View in: PubMed   Mentions: 44     Fields:    Translation:AnimalsCells
    56. Protein modularity, cooperative binding, and hybrid regulatory states underlie transcriptional network diversification. Cell. 2012 Sep 28; 151(1):80-95. Baker CR, Booth LN, Sorrells TR, Johnson AD. PMID: 23021217; PMCID: PMC3519278.
      View in: PubMed   Mentions: 52     Fields:    Translation:Animals
    57. A recently evolved transcriptional network controls biofilm development in Candida albicans. Cell. 2012 Jan 20; 148(1-2):126-38. Nobile CJ, Fox EP, Nett JE, Sorrells TR, Mitrovich QM, Hernday AD, Tuch BB, Andes DR, Johnson AD. PMID: 22265407; PMCID: PMC3266547.
      View in: PubMed   Mentions: 367     Fields:    Translation:Animals
    58. A conserved transcriptional regulator governs fungal morphology in widely diverged species. Genetics. 2012 Feb; 190(2):511-21. Cain CW, Lohse MB, Homann OR, Sil A, Johnson AD. PMID: 22095082; PMCID: PMC3276625.
      View in: PubMed   Mentions: 45     Fields:    Translation:AnimalsCells
    59. Extensive DNA-binding specificity divergence of a conserved transcription regulator. Proc Natl Acad Sci U S A. 2011 May 03; 108(18):7493-8. Baker CR, Tuch BB, Johnson AD. PMID: 21498688; PMCID: PMC3088634.
      View in: PubMed   Mentions: 53     Fields:    Translation:AnimalsCells
    60. Intercalation of a new tier of transcription regulation into an ancient circuit. Nature. 2010 Dec 16; 468(7326):959-63. Booth LN, Tuch BB, Johnson AD. PMID: 21164485; PMCID: PMC3254258.
      View in: PubMed   Mentions: 46     Fields:    Translation:AnimalsCells
    61. Evolution of yeast noncoding RNAs reveals an alternative mechanism for widespread intron loss. Science. 2010 Nov 05; 330(6005):838-41. Mitrovich QM, Tuch BB, De La Vega FM, Guthrie C, Johnson AD. PMID: 21051641; PMCID: PMC3496775.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    62. Evolution of transcription networks--lessons from yeasts. Curr Biol. 2010 Sep 14; 20(17):R746-53. Li H, Johnson AD. PMID: 20833319; PMCID: PMC3438143.
      View in: PubMed   Mentions: 50     Fields:    Translation:AnimalsCells
    63. Temporal anatomy of an epigenetic switch in cell programming: the white-opaque transition of C. albicans. Mol Microbiol. 2010 Oct; 78(2):331-43. Lohse MB, Johnson AD. PMID: 20735781; PMCID: PMC3057202.
      View in: PubMed   Mentions: 26     Fields:    Translation:Animals
    64. The transcriptomes of two heritable cell types illuminate the circuit governing their differentiation. PLoS Genet. 2010 Aug 19; 6(8):e1001070. Tuch BB, Mitrovich QM, Homann OR, Hernday AD, Monighetti CK, De La Vega FM, Johnson AD. PMID: 20808890; PMCID: PMC2924316.
      View in: PubMed   Mentions: 99     Fields:    Translation:HumansAnimalsCells
    65. Distinct class of DNA-binding domains is exemplified by a master regulator of phenotypic switching in Candida albicans. Proc Natl Acad Sci U S A. 2010 Aug 10; 107(32):14105-10. Lohse MB, Zordan RE, Cain CW, Johnson AD. PMID: 20660774; PMCID: PMC2922561.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansAnimalsCells
    66. Systematic screens of a Candida albicans homozygous deletion library decouple morphogenetic switching and pathogenicity. Nat Genet. 2010 Jul; 42(7):590-8. Noble SM, French S, Kohn LA, Chen V, Johnson AD. PMID: 20543849; PMCID: PMC2893244.
      View in: PubMed   Mentions: 397     Fields:    Translation:HumansAnimalsCells
    67. MochiView: versatile software for genome browsing and DNA motif analysis. BMC Biol. 2010 Apr 21; 8:49. Homann OR, Johnson AD. PMID: 20409324; PMCID: PMC2867778.
      View in: PubMed   Mentions: 101     Fields:    Translation:Cells
    68. Genetics and molecular biology in Candida albicans. Methods Enzymol. 2010; 470:737-58. Hernday AD, Noble SM, Mitrovich QM, Johnson AD. PMID: 20946834.
      View in: PubMed   Mentions: 52     Fields:    Translation:Animals
    69. A phenotypic profile of the Candida albicans regulatory network. PLoS Genet. 2009 Dec; 5(12):e1000783. Homann OR, Dea J, Noble SM, Johnson AD. PMID: 20041210; PMCID: PMC2790342.
      View in: PubMed   Mentions: 274     Fields:    Translation:AnimalsCells
    70. White-opaque switching in Candida albicans. Curr Opin Microbiol. 2009 Dec; 12(6):650-4. Lohse MB, Johnson AD. PMID: 19853498; PMCID: PMC2812476.
      View in: PubMed   Mentions: 78     Fields:    Translation:AnimalsCells
    71. An RNA transport system in Candida albicans regulates hyphal morphology and invasive growth. PLoS Genet. 2009 Sep; 5(9):e1000664. Elson SL, Noble SM, Solis NV, Filler SG, Johnson AD. PMID: 19779551; PMCID: PMC2739428.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansAnimalsCells
    72. Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution. Science. 2009 Sep 25; 325(5948):1682-6. Holt LJ, Tuch BB, Villén J, Johnson AD, Gygi SP, Morgan DO. PMID: 19779198; PMCID: PMC2813701.
      View in: PubMed   Mentions: 521     Fields:    Translation:AnimalsCells
    73. Biofilm matrix regulation by Candida albicans Zap1. PLoS Biol. 2009 Jun; 7(6):e1000133. Nobile CJ, Nett JE, Hernday AD, Homann OR, Deneault JS, Nantel A, Andes DR, Johnson AD, Mitchell AP. PMID: 19529758; PMCID: PMC2688839.
      View in: PubMed   Mentions: 173     Fields:    Translation:AnimalsCells
    74. Phagocytosis of Candida albicans by RNAi-treated Drosophila S2 cells. Methods Mol Biol. 2009; 470:347-58. Stroschein-Stevenson SL, Foley E, O'Farrell PH, Johnson AD. PMID: 19089394.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    75. The parasexual cycle in Candida albicans provides an alternative pathway to meiosis for the formation of recombinant strains. PLoS Biol. 2008 May 06; 6(5):e110. Forche A, Alby K, Schaefer D, Johnson AD, Berman J, Bennett RJ. PMID: 18462019; PMCID: PMC2365976.
      View in: PubMed   Mentions: 172     Fields:    Translation:AnimalsCells
    76. Evolution of eukaryotic transcription circuits. Science. 2008 Mar 28; 319(5871):1797-9. Tuch BB, Li H, Johnson AD. PMID: 18369141.
      View in: PubMed   Mentions: 86     Fields:    Translation:HumansAnimalsCells
    77. The evolution of combinatorial gene regulation in fungi. PLoS Biol. 2008 Feb; 6(2):e38. Tuch BB, Galgoczy DJ, Hernday AD, Li H, Johnson AD. PMID: 18303948; PMCID: PMC2253631.
      View in: PubMed   Mentions: 152     Fields:    
    78. Differential phagocytosis of white versus opaque Candida albicans by Drosophila and mouse phagocytes. PLoS One. 2008 Jan 23; 3(1):e1473. Lohse MB, Johnson AD. PMID: 18213381; PMCID: PMC2198939.
      View in: PubMed   Mentions: 82     Fields:    Translation:AnimalsCells
    79. Interlocking transcriptional feedback loops control white-opaque switching in Candida albicans. PLoS Biol. 2007 Oct; 5(10):e256. Zordan RE, Miller MG, Galgoczy DJ, Tuch BB, Johnson AD. PMID: 17880264; PMCID: PMC1976629.
      View in: PubMed   Mentions: 175     Fields:    Translation:AnimalsCells
    80. Computational and experimental approaches double the number of known introns in the pathogenic yeast Candida albicans. Genome Res. 2007 Apr; 17(4):492-502. Mitrovich QM, Tuch BB, Guthrie C, Johnson AD. PMID: 17351132; PMCID: PMC1832096.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    81. Genetics of Candida albicans, a diploid human fungal pathogen. Annu Rev Genet. 2007; 41:193-211. Noble SM, Johnson AD. PMID: 17614788.
      View in: PubMed   Mentions: 54     Fields:    Translation:Animals
    82. The role of nutrient regulation and the Gpa2 protein in the mating pheromone response of C. albicans. Mol Microbiol. 2006 Oct; 62(1):100-19. Bennett RJ, Johnson AD. PMID: 16987174.
      View in: PubMed   Mentions: 48     Fields:    Translation:Animals
    83. Evolution of alternative transcriptional circuits with identical logic. Nature. 2006 Sep 28; 443(7110):415-20. Tsong AE, Tuch BB, Li H, Johnson AD. PMID: 17006507.
      View in: PubMed   Mentions: 156     Fields:    Translation:AnimalsCells
    84. Epigenetic properties of white-opaque switching in Candida albicans are based on a self-sustaining transcriptional feedback loop. Proc Natl Acad Sci U S A. 2006 Aug 22; 103(34):12807-12. Zordan RE, Galgoczy DJ, Johnson AD. PMID: 16899543; PMCID: PMC1535343.
      View in: PubMed   Mentions: 179     Fields:    Translation:AnimalsCells
    85. Identification of Drosophila gene products required for phagocytosis of Candida albicans. PLoS Biol. 2006 Jan; 4(1):e4. Stroschein-Stevenson SL, Foley E, O'Farrell PH, Johnson AD. PMID: 16336044; PMCID: PMC1310651.
      View in: PubMed   Mentions: 130     Fields:    Translation:Animals
    86. Transcriptional response of Candida albicans to nitric oxide and the role of the YHB1 gene in nitrosative stress and virulence. Mol Biol Cell. 2005 Oct; 16(10):4814-26. Hromatka BS, Noble SM, Johnson AD. PMID: 16030247; PMCID: PMC1237085.
      View in: PubMed   Mentions: 90     Fields:    Translation:AnimalsCells
    87. A human-curated annotation of the Candida albicans genome. PLoS Genet. 2005 Jul; 1(1):36-57. Braun BR, van Het Hoog M, d'Enfert C, Martchenko M, Dungan J, Kuo A, Inglis DO, Uhl MA, Hogues H, Berriman M, Lorenz M, Levitin A, Oberholzer U, Bachewich C, Harcus D, Marcil A, Dignard D, Iouk T, Zito R, Frangeul L, Tekaia F, Rutherford K, Wang E, Munro CA, Bates S, Gow NA, Hoyer LL, Köhler G, Morschhäuser J, Newport G, Znaidi S, Raymond M, Turcotte B, Sherlock G, Costanzo M, Ihmels J, Berman J, Sanglard D, Agabian N, Mitchell AP, Johnson AD, Whiteway M, Nantel A. PMID: 16103911; PMCID: PMC1183520.
      View in: PubMed   Mentions: 158     Fields:    
    88. Induction of the Candida albicans filamentous growth program by relief of transcriptional repression: a genome-wide analysis. Mol Biol Cell. 2005 Jun; 16(6):2903-12. Kadosh D, Johnson AD. PMID: 15814840; PMCID: PMC1142434.
      View in: PubMed   Mentions: 155     Fields:    Translation:Animals
    89. Genome-wide analysis of the functions of a conserved surface on the corepressor Tup1. Mol Biol Cell. 2005 Jun; 16(6):2605-13. Green SR, Johnson AD. PMID: 15788561; PMCID: PMC1142409.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    90. Nuclear fusion occurs during mating in Candida albicans and is dependent on the KAR3 gene. Mol Microbiol. 2005 Feb; 55(4):1046-59. Bennett RJ, Miller MG, Chua PR, Maxon ME, Johnson AD. PMID: 15686553.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    91. Strains and strategies for large-scale gene deletion studies of the diploid human fungal pathogen Candida albicans. Eukaryot Cell. 2005 Feb; 4(2):298-309. Noble SM, Johnson AD. PMID: 15701792; PMCID: PMC549318.
      View in: PubMed   Mentions: 338     Fields:    Translation:HumansAnimals
    92. Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2004 Dec 28; 101(52):18069-74. Galgoczy DJ, Cassidy-Stone A, Llinás M, O'Rourke SM, Herskowitz I, DeRisi JL, Johnson AD. PMID: 15604142; PMCID: PMC535907.
      View in: PubMed   Mentions: 58     Fields:    Translation:AnimalsCells
    93. Promoter-dependent roles for the Srb10 cyclin-dependent kinase and the Hda1 deacetylase in Tup1-mediated repression in Saccharomyces cerevisiae. Mol Biol Cell. 2004 Sep; 15(9):4191-202. Green SR, Johnson AD. PMID: 15240822; PMCID: PMC515351.
      View in: PubMed   Mentions: 44     Fields:    Translation:AnimalsCells
    94. Evolution of a combinatorial transcriptional circuit: a case study in yeasts. Cell. 2003 Nov 14; 115(4):389-99. Tsong AE, Miller MG, Raisner RM, Johnson AD. PMID: 14622594.
      View in: PubMed   Mentions: 142     Fields:    Translation:AnimalsCells
    95. Identification and characterization of a Candida albicans mating pheromone. Mol Cell Biol. 2003 Nov; 23(22):8189-201. Bennett RJ, Uhl MA, Miller MG, Johnson AD. PMID: 14585977; PMCID: PMC262406.
      View in: PubMed   Mentions: 87     Fields:    Translation:HumansAnimalsCells
    96. The biology of mating in Candida albicans. Nat Rev Microbiol. 2003 Nov; 1(2):106-16. Johnson A. PMID: 15035040.
      View in: PubMed   Mentions: 57     Fields:    Translation:HumansAnimals
    97. Haploinsufficiency-based large-scale forward genetic analysis of filamentous growth in the diploid human fungal pathogen C.albicans. EMBO J. 2003 Jun 02; 22(11):2668-78. Uhl MA, Biery M, Craig N, Johnson AD. PMID: 12773383; PMCID: PMC156753.
      View in: PubMed   Mentions: 107     Fields:    Translation:HumansAnimals
    98. Completion of a parasexual cycle in Candida albicans by induced chromosome loss in tetraploid strains. EMBO J. 2003 May 15; 22(10):2505-15. Bennett RJ, Johnson AD. PMID: 12743044; PMCID: PMC155993.
      View in: PubMed   Mentions: 163     Fields:    Translation:HumansAnimalsCells
    99. Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes. EMBO J. 2003 Apr 15; 22(8):1846-56. Simic R, Lindstrom DL, Tran HG, Roinick KL, Costa PJ, Johnson AD, Hartzog GA, Arndt KM. PMID: 12682017; PMCID: PMC154471.
      View in: PubMed   Mentions: 184     Fields:    Translation:AnimalsCells
    100. Ash1 protein, an asymmetrically localized transcriptional regulator, controls filamentous growth and virulence of Candida albicans. Mol Cell Biol. 2002 Dec; 22(24):8669-80. Inglis DO, Johnson AD. PMID: 12446785; PMCID: PMC139894.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    101. White-opaque switching in Candida albicans is controlled by mating-type locus homeodomain proteins and allows efficient mating. Cell. 2002 Aug 09; 110(3):293-302. Miller MG, Johnson AD. PMID: 12176317.
      View in: PubMed   Mentions: 283     Fields:    Translation:HumansAnimalsCells
    102. Development of Streptococcus thermophilus lacZ as a reporter gene for Candida albicans. Microbiology (Reading). 2001 May; 147(Pt 5):1189-1195. Uhl MA, Johnson AD. PMID: 11320122.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
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