Nico Stuurman • UCSF Profiles

Nico Stuurman, PhD

Title(s)	Collaborator, Resource Management
School	Chancellor/EVC/FAS
Phone	--
ORCID	0000-0002-6179-8613
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Bibliographic

Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

Three-color single-molecule imaging reveals conformational dynamics of dynein undergoing motility. Proc Natl Acad Sci U S A. 2021 08 03; 118(31). Niekamp S, Stuurman N, Zhang N, Vale RD. PMID: 34326255; PMCID: PMC8346880.

View in: PubMed Mentions: Fields:
Sci Science
Translation:Cells
Pycro-Manager: open-source software for customized and reproducible microscope control. Nat Methods. 2021 03; 18(3):226-228. Pinkard H, Stuurman N, Ivanov IE, Anthony NM, Ouyang W, Li B, Yang B, Tsuchida MA, Chhun B, Zhang G, Mei R, Anderson M, Shepherd DP, Hunt-Isaak I, Dunn RL, Jahr W, Kato S, Royer LA, Thiagarajah JR, Eliceiri KW, Lundberg E, Mehta SB, Waller L. PMID: 33674797; PMCID: PMC8532176.

View in: PubMed Mentions: 8 Fields:
Cli Clinical Laboratory Techniques
High-content imaging-based pooled CRISPR screens in mammalian cells. J Cell Biol. 2021 02 01; 220(2). Yan X, Stuurman N, Ribeiro SA, Tanenbaum ME, Horlbeck MA, Liem CR, Jost M, Weissman JS, Vale RD. PMID: 33465779; PMCID: PMC7821101.

View in: PubMed Mentions: 8 Fields:
Cel Cell Biology
Translation:Humans Cells
A 6-nm ultra-photostable DNA FluoroCube for fluorescence imaging. Nat Methods. 2020 04; 17(4):437-441. Niekamp S, Stuurman N, Vale RD. PMID: 32203385; PMCID: PMC7138518.

View in: PubMed Mentions: 8 Fields:
Cli Clinical Laboratory Techniques
Translation:Humans
Epi-illumination SPIM for volumetric imaging with high spatial-temporal resolution. Nat Methods. 2019 06; 16(6):501-504. Yang B, Chen X, Wang Y, Feng S, Pessino V, Stuurman N, Cho NH, Cheng KW, Lord SJ, Xu L, Xie D, Mullins RD, Leonetti MD, Huang B. PMID: 31061492; PMCID: PMC6557432.

View in: PubMed Mentions: 33 Fields:
Cli Clinical Laboratory Techniques
Translation:Humans Animals Cells
Nanometer-accuracy distance measurements between fluorophores at the single-molecule level. Proc Natl Acad Sci U S A. 2019 03 05; 116(10):4275-4284. Niekamp S, Sung J, Huynh W, Bhabha G, Vale RD, Stuurman N. PMID: 30770448; PMCID: PMC6410877.

View in: PubMed Mentions: 7 Fields:
Sci Science
Translation:Cells
Cellular aspect ratio and cell division mechanics underlie the patterning of cell progeny in diverse mammalian epithelia. Elife. 2018 06 13; 7. McKinley KL, Stuurman N, Royer LA, Schartner C, Castillo-Azofeifa D, Delling M, Klein OD, Vale RD. PMID: 29897330; PMCID: PMC6023609.

View in: PubMed Mentions: 16 Fields:
Bio Biology
Translation:Animals Cells
Visualizing Calcium Flux in Freely Moving Nematode Embryos. Biophys J. 2017 May 09; 112(9):1975-1983. Ardiel EL, Kumar A, Marbach J, Christensen R, Gupta R, Duncan W, Daniels JS, Stuurman N, Colón-Ramos D, Shroff H. PMID: 28494967; PMCID: PMC5425378.

View in: PubMed Mentions: 12 Fields:
Bio Biophysics
Translation:Animals Cells
An acquisition and analysis pipeline for scanning angle interference microscopy. Nat Methods. 2016 10 31; 13(11):897-898. Carbone CB, Vale RD, Stuurman N. PMID: 27798596; PMCID: PMC5100979.

View in: PubMed Mentions: 4 Fields:
Cli Clinical Laboratory Techniques
Translation:Humans
Micro-Magellan: open-source, sample-adaptive, acquisition software for optical microscopy. Nat Methods. 2016 09 29; 13(10):807-809. Pinkard H, Stuurman N, Corbin K, Vale R, Krummel MF. PMID: 27684577; PMCID: PMC5100821.

View in: PubMed Mentions: 6 Fields:
Cli Clinical Laboratory Techniques
Translation:Humans
Impact of New Camera Technologies on Discoveries in Cell Biology. Biol Bull. 2016 08; 231(1):5-13. Stuurman N, Vale RD. PMID: 27638691; PMCID: PMC5100698.

View in: PubMed Mentions: 6 Fields:
Bio Biology
Quantitative evaluation of software packages for single-molecule localization microscopy. Nat Methods. 2015 Aug; 12(8):717-24. Sage D, Kirshner H, Pengo T, Stuurman N, Min J, Manley S, Unser M. PMID: 26076424.

View in: PubMed Mentions: 111 Fields:
Cli Clinical Laboratory Techniques
Translation:Animals Cells
High-resolution imaging of cardiomyocyte behavior reveals two distinct steps in ventricular trabeculation. Development. 2014 Feb; 141(3):585-93. Staudt DW, Liu J, Thorn KS, Stuurman N, Liebling M, Stainier DY. PMID: 24401373; PMCID: PMC3899815.

View in: PubMed Mentions: 56 Fields:
Bio Biology Emb Embryology
Translation:Animals Cells
Advanced methods of microscope control using μManager software. J Biol Methods. 2014; 1(2). Edelstein AD, Tsuchida MA, Amodaj N, Pinkard H, Vale RD, Stuurman N. PMID: 25606571; PMCID: PMC4297649.

View in: PubMed Mentions: 547
Genes involved in centrosome-independent mitotic spindle assembly in Drosophila S2 cells. Proc Natl Acad Sci U S A. 2013 Dec 03; 110(49):19808-13. Moutinho-Pereira S, Stuurman N, Afonso O, Hornsveld M, Aguiar P, Goshima G, Vale RD, Maiato H. PMID: 24255106; PMCID: PMC3856817.

View in: PubMed Mentions: 24 Fields:
Sci Science
Translation:Animals Cells
Chromophore-assisted laser inactivation in neural development. Neurosci Bull. 2012 Aug; 28(4):333-41. Li W, Stuurman N, Ou G. PMID: 22833033; PMCID: PMC5561893.

View in: PubMed Mentions: 2 Fields:
Neu Neurology
Translation:Humans Animals Cells
Biological imaging software tools. Nat Methods. 2012 Jun 28; 9(7):697-710. Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B, Stuurman N, Stuurmann N, Swedlow JR, Tomancak P, Carpenter AE. PMID: 22743775; PMCID: PMC3659807.

View in: PubMed Mentions: 178 Fields:
Cli Clinical Laboratory Techniques
Software tools, data structures, and interfaces for microscope imaging. Cold Spring Harb Protoc. 2012 Jan 01; 2012(1):50-61. Stuurman N, Swedlow JR. PMID: 22194261.

View in: PubMed Mentions: 3 Fields:
Cli Clinical Laboratory Techniques
Computer control of microscopes using µManager. Curr Protoc Mol Biol. 2010 Oct; Chapter 14:Unit14.20. Edelstein A, Amodaj N, Hoover K, Vale R, Stuurman N. PMID: 20890901; PMCID: PMC3065365.

View in: PubMed Mentions: 703 Fields:
Mol Molecular Biology
Polarized myosin produces unequal-size daughters during asymmetric cell division. Science. 2010 Oct 29; 330(6004):677-80. Ou G, Stuurman N, D'Ambrosio M, Vale RD. PMID: 20929735; PMCID: PMC3032534.

View in: PubMed Mentions: 73 Fields:
Sci Science
Translation:Animals Cells
Imaging single molecular motor motility with total internal reflection fluorescence microscopy (TIRFM). Cold Spring Harb Protoc. 2010 Mar; 2010(3):pdb.prot5399. Reck-Peterson SL, Derr ND, Stuurman N. PMID: 20194468.

View in: PubMed Mentions: 1 Fields:
Cli Clinical Laboratory Techniques
Translation:Cells
Imaging single molecules using total internal reflection fluorescence microscopy (TIRFM). Cold Spring Harb Protoc. 2010 Mar; 2010(3):pdb.top73. Reck-Peterson SL, Derr ND, Stuurman N. PMID: 20194477.

View in: PubMed Mentions: 11 Fields:
Cli Clinical Laboratory Techniques
Translation:Cells
Determining single-molecule intensity as a function of power density. Cold Spring Harb Protoc. 2010 Mar; 2010(3):pdb.prot5398. Reck-Peterson SL, Derr ND, Stuurman N. PMID: 20194467.

View in: PubMed Mentions: 2 Fields:
Cli Clinical Laboratory Techniques
Augmin: a protein complex required for centrosome-independent microtubule generation within the spindle. J Cell Biol. 2008 May 05; 181(3):421-9. Goshima G, Mayer M, Zhang N, Stuurman N, Vale RD. PMID: 18443220; PMCID: PMC2364697.

View in: PubMed Mentions: 178 Fields:
Cel Cell Biology
Translation:Humans Animals Cells
Functional genomic screen reveals genes involved in lipid-droplet formation and utilization. Nature. 2008 May 29; 453(7195):657-61. Guo Y, Walther TC, Rao M, Stuurman N, Goshima G, Terayama K, Wong JS, Vale RD, Walter P, Farese RV. PMID: 18408709; PMCID: PMC2734507.

View in: PubMed Mentions: 310 Fields:
Sci Science
Translation:Animals Cells
High throughput microscopy: from raw images to discoveries. J Cell Sci. 2007 Nov 01; 120(Pt 21):3715-22. Wollman R, Stuurman N. PMID: 17959627.

View in: PubMed Mentions: 28 Fields:
Cel Cell Biology
Translation:Humans Cells
Spindly, a novel protein essential for silencing the spindle assembly checkpoint, recruits dynein to the kinetochore. J Cell Biol. 2007 Jun 18; 177(6):1005-15. Griffis ER, Stuurman N, Vale RD. PMID: 17576797; PMCID: PMC2064361.

View in: PubMed Mentions: 121 Fields:
Cel Cell Biology
Translation:Animals Cells
Genes required for mitotic spindle assembly in Drosophila S2 cells. Science. 2007 Apr 20; 316(5823):417-21. Goshima G, Wollman R, Goodwin SS, Zhang N, Scholey JM, Vale RD, Stuurman N. PMID: 17412918; PMCID: PMC2837481.

View in: PubMed Mentions: 291 Fields:
Sci Science
Translation:Animals Cells
Single-molecule observations of neck linker conformational changes in the kinesin motor protein. Nat Struct Mol Biol. 2006 Oct; 13(10):887-94. Tomishige M, Stuurman N, Vale RD. PMID: 17013387.

View in: PubMed Mentions: 42 Fields:
Mol Molecular Biology
Translation:Cells
Length control of the metaphase spindle. Curr Biol. 2005 Nov 22; 15(22):1979-88. Goshima G, Wollman R, Stuurman N, Scholey JM, Vale RD. PMID: 16303556.

View in: PubMed Mentions: 131 Fields:
Bio Biology
Translation:Animals Cells
Use of RNA interference in Drosophila S2 cells to identify host pathways controlling compartmentalization of an intracellular pathogen. Proc Natl Acad Sci U S A. 2005 Sep 20; 102(38):13646-51. Cheng LW, Viala JP, Stuurman N, Wiedemann U, Vale RD, Portnoy DA. PMID: 16157870; PMCID: PMC1224656.

View in: PubMed Mentions: 58 Fields:
Sci Science
Translation:Animals Cells
Distinct pathways control recruitment and maintenance of myosin II at the cleavage furrow during cytokinesis. Proc Natl Acad Sci U S A. 2005 Sep 20; 102(38):13473-8. Dean SO, Rogers SL, Stuurman N, Vale RD, Spudich JA. PMID: 16174742; PMCID: PMC1200093.

View in: PubMed Mentions: 56 Fields:
Sci Science
Translation:Animals Cells
Molecular requirements for actin-based lamella formation in Drosophila S2 cells. J Cell Biol. 2003 Sep 15; 162(6):1079-88. Rogers SL, Wiedemann U, Stuurman N, Vale RD. PMID: 12975351; PMCID: PMC2172842.

View in: PubMed Mentions: 206 Fields:
Cel Cell Biology
Translation:Animals Cells
Mitochondrial positioning in fission yeast is driven by association with dynamic microtubules and mitotic spindle poles. Proc Natl Acad Sci U S A. 2003 Sep 30; 100(20):11424-8. Yaffe MP, Stuurman N, Vale RD. PMID: 12972644; PMCID: PMC208773.

View in: PubMed Mentions: 29 Fields:
Sci Science
Translation:Animals Cells
Role of phosphatidylinositol(4,5)bisphosphate organization in membrane transport by the Unc104 kinesin motor. Cell. 2002 May 03; 109(3):347-58. Klopfenstein DR, Tomishige M, Stuurman N, Vale RD. PMID: 12015984; PMCID: PMC2851634.

View in: PubMed Mentions: 122 Fields:
Cel Cell Biology
Translation:Animals Cells
In vivo association of lamins with nucleic acids in Drosophila melanogaster. J Cell Sci. 1998 Jan; 111 ( Pt 1):121-9. Rzepecki R, Bogachev SS, Kokoza E, Stuurman N, Fisher PA. PMID: 9394018.

View in: PubMed Mentions: 20 Fields:
Cel Cell Biology
Translation:Animals Cells
Binding of matrix attachment regions to nuclear lamin is mediated by the rod domain and depends on the lamin polymerization state. FEBS Lett. 1996 Feb 12; 380(1-2):161-4. Zhao K, Harel A, Stuurman N, Guedalia D, Gruenbaum Y. PMID: 8603728.

View in: PubMed Mentions: 25 Fields:
Bio Biochemistry
Translation:Animals Cells
Interphase phosphorylation of the Drosophila nuclear lamin: site-mapping using a monoclonal antibody. J Cell Sci. 1995 Sep; 108 ( Pt 9):3137-44. Stuurman N, Maus N, Fisher PA. PMID: 8537453.

View in: PubMed Mentions: 31 Fields:
Cel Cell Biology
Translation:Animals Cells