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Pycro-Manager: open-source software for customized and reproducible microscope control. Nat Methods. 2021 03; 18(3):226-228.
Pinkard H, Stuurman N, Ivanov IE, Anthony NM, Ouyang W, Li B, Yang B, Tsuchida MA, Chhun B, Zhang G, Mei R, Anderson M, Shepherd DP, Hunt-Isaak I, Dunn RL, Jahr W, Kato S, Royer LA, Thiagarajah JR, Eliceiri KW, Lundberg E, Mehta SB, Waller L. PMID: 33674797.
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PubMed Mentions: Fields:
-
High-content imaging-based pooled CRISPR screens in mammalian cells. J Cell Biol. 2021 Feb 01; 220(2).
Yan X, Stuurman N, Ribeiro SA, Tanenbaum ME, Horlbeck MA, Liem CR, Jost M, Weissman JS, Vale RD. PMID: 33465779.
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PubMed Mentions:
1 Fields:
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A 6-nm ultra-photostable DNA FluoroCube for fluorescence imaging. Nat Methods. 2020 04; 17(4):437-441.
Niekamp S, Stuurman N, Vale RD. PMID: 32203385.
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PubMed Mentions:
1 Fields:
Translation:
Humans
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Epi-illumination SPIM for volumetric imaging with high spatial-temporal resolution. Nat Methods. 2019 06; 16(6):501-504.
Yang B, Chen X, Wang Y, Feng S, Pessino V, Stuurman N, Cho NH, Cheng KW, Lord SJ, Xu L, Xie D, Mullins RD, Leonetti MD, Huang B. PMID: 31061492.
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PubMed Mentions:
16 Fields:
Translation:
HumansAnimalsCells
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Nanometer-accuracy distance measurements between fluorophores at the single-molecule level. Proc Natl Acad Sci U S A. 2019 03 05; 116(10):4275-4284.
Niekamp S, Sung J, Huynh W, Bhabha G, Vale RD, Stuurman N. PMID: 30770448.
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PubMed Mentions:
6 Fields:
Translation:
Cells
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Cellular aspect ratio and cell division mechanics underlie the patterning of cell progeny in diverse mammalian epithelia. Elife. 2018 06 13; 7.
McKinley KL, Stuurman N, Royer LA, Schartner C, Castillo-Azofeifa D, Delling M, Klein OD, Vale RD. PMID: 29897330.
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PubMed Mentions:
9 Fields:
Translation:
AnimalsCells
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Visualizing Calcium Flux in Freely Moving Nematode Embryos. Biophys J. 2017 May 09; 112(9):1975-1983.
Ardiel EL, Kumar A, Marbach J, Christensen R, Gupta R, Duncan W, Daniels JS, Stuurman N, Colón-Ramos D, Shroff H. PMID: 28494967.
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PubMed Mentions:
9 Fields:
Translation:
AnimalsCells
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An acquisition and analysis pipeline for scanning angle interference microscopy. Nat Methods. 2016 10 31; 13(11):897-898.
Carbone CB, Vale RD, Stuurman N. PMID: 27798596.
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PubMed Mentions:
4 Fields:
Translation:
Humans
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Micro-Magellan: open-source, sample-adaptive, acquisition software for optical microscopy. Nat Methods. 2016 09 29; 13(10):807-809.
Pinkard H, Stuurman N, Corbin K, Vale R, Krummel MF. PMID: 27684577.
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PubMed Mentions:
3 Fields:
Translation:
Humans
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Impact of New Camera Technologies on Discoveries in Cell Biology. Biol Bull. 2016 08; 231(1):5-13.
Stuurman N, Vale RD. PMID: 27638691.
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PubMed Mentions:
4 Fields:
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Quantitative evaluation of software packages for single-molecule localization microscopy. Nat Methods. 2015 Aug; 12(8):717-24.
Sage D, Kirshner H, Pengo T, Stuurman N, Min J, Manley S, Unser M. PMID: 26076424.
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PubMed Mentions:
85 Fields:
Translation:
AnimalsCells
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High-resolution imaging of cardiomyocyte behavior reveals two distinct steps in ventricular trabeculation. Development. 2014 Feb; 141(3):585-93.
Staudt DW, Liu J, Thorn KS, Stuurman N, Liebling M, Stainier DY. PMID: 24401373.
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PubMed Mentions:
46 Fields:
Translation:
AnimalsCells
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Advanced methods of microscope control using µManager software. J Biol Methods. 2014; 1(2).
Edelstein AD, Tsuchida MA, Amodaj N, Pinkard H, Vale RD, Stuurman N. PMID: 25606571.
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PubMed Mentions:
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Genes involved in centrosome-independent mitotic spindle assembly in Drosophila S2 cells. Proc Natl Acad Sci U S A. 2013 Dec 03; 110(49):19808-13.
Moutinho-Pereira S, Stuurman N, Afonso O, Hornsveld M, Aguiar P, Goshima G, Vale RD, Maiato H. PMID: 24255106.
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PubMed Mentions:
22 Fields:
Translation:
AnimalsCells
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Chromophore-assisted laser inactivation in neural development. Neurosci Bull. 2012 Aug; 28(4):333-41.
Li W, Stuurman N, Ou G. PMID: 22833033.
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PubMed Mentions:
2 Fields:
Translation:
HumansAnimalsCells
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Biological imaging software tools. Nat Methods. 2012 Jun 28; 9(7):697-710.
Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B, Stuurman N, Stuurmann N, Swedlow JR, Tomancak P, Carpenter AE. PMID: 22743775.
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PubMed Mentions:
156 Fields:
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Software tools, data structures, and interfaces for microscope imaging. Cold Spring Harb Protoc. 2012 Jan 01; 2012(1):50-61.
Stuurman N, Swedlow JR. PMID: 22194261.
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PubMed Mentions:
3 Fields:
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Computer control of microscopes using µManager. Curr Protoc Mol Biol. 2010 Oct; Chapter 14:Unit14.20.
Edelstein A, Amodaj N, Hoover K, Vale R, Stuurman N. PMID: 20890901.
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PubMed Mentions:
575 Fields:
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Polarized myosin produces unequal-size daughters during asymmetric cell division. Science. 2010 Oct 29; 330(6004):677-80.
Ou G, Stuurman N, D'Ambrosio M, Vale RD. PMID: 20929735.
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PubMed Mentions:
65 Fields:
Translation:
AnimalsCells
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Imaging single molecular motor motility with total internal reflection fluorescence microscopy (TIRFM). Cold Spring Harb Protoc. 2010 Mar; 2010(3):pdb.prot5399.
Reck-Peterson SL, Derr ND, Stuurman N. PMID: 20194468.
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PubMed Mentions:
1 Fields:
Translation:
Cells
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Imaging single molecules using total internal reflection fluorescence microscopy (TIRFM). Cold Spring Harb Protoc. 2010 Mar; 2010(3):pdb.top73.
Reck-Peterson SL, Derr ND, Stuurman N. PMID: 20194477.
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PubMed Mentions:
10 Fields:
Translation:
Cells
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Determining single-molecule intensity as a function of power density. Cold Spring Harb Protoc. 2010 Mar; 2010(3):pdb.prot5398.
Reck-Peterson SL, Derr ND, Stuurman N. PMID: 20194467.
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PubMed Mentions:
2 Fields:
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Augmin: a protein complex required for centrosome-independent microtubule generation within the spindle. J Cell Biol. 2008 May 05; 181(3):421-9.
Goshima G, Mayer M, Zhang N, Stuurman N, Vale RD. PMID: 18443220.
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PubMed Mentions:
151 Fields:
Translation:
HumansAnimalsCells
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Functional genomic screen reveals genes involved in lipid-droplet formation and utilization. Nature. 2008 May 29; 453(7195):657-61.
Guo Y, Walther TC, Rao M, Stuurman N, Goshima G, Terayama K, Wong JS, Vale RD, Walter P, Farese RV. PMID: 18408709.
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PubMed Mentions:
283 Fields:
Translation:
AnimalsCells
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High throughput microscopy: from raw images to discoveries. J Cell Sci. 2007 Nov 01; 120(Pt 21):3715-22.
Wollman R, Stuurman N. PMID: 17959627.
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PubMed Mentions:
25 Fields:
Translation:
HumansCells
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Spindly, a novel protein essential for silencing the spindle assembly checkpoint, recruits dynein to the kinetochore. J Cell Biol. 2007 Jun 18; 177(6):1005-15.
Griffis ER, Stuurman N, Vale RD. PMID: 17576797.
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PubMed Mentions:
103 Fields:
Translation:
AnimalsCells
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Genes required for mitotic spindle assembly in Drosophila S2 cells. Science. 2007 Apr 20; 316(5823):417-21.
Goshima G, Wollman R, Goodwin SS, Zhang N, Scholey JM, Vale RD, Stuurman N. PMID: 17412918.
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PubMed Mentions:
263 Fields:
Translation:
AnimalsCells
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Single-molecule observations of neck linker conformational changes in the kinesin motor protein. Nat Struct Mol Biol. 2006 Oct; 13(10):887-94.
Tomishige M, Stuurman N, Vale RD. PMID: 17013387.
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PubMed Mentions:
37 Fields:
Translation:
Cells
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Length control of the metaphase spindle. Curr Biol. 2005 Nov 22; 15(22):1979-88.
Goshima G, Wollman R, Stuurman N, Scholey JM, Vale RD. PMID: 16303556.
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PubMed Mentions:
122 Fields:
Translation:
AnimalsCells
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Use of RNA interference in Drosophila S2 cells to identify host pathways controlling compartmentalization of an intracellular pathogen. Proc Natl Acad Sci U S A. 2005 Sep 20; 102(38):13646-51.
Cheng LW, Viala JP, Stuurman N, Wiedemann U, Vale RD, Portnoy DA. PMID: 16157870.
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PubMed Mentions:
51 Fields:
Translation:
AnimalsCells
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Distinct pathways control recruitment and maintenance of myosin II at the cleavage furrow during cytokinesis. Proc Natl Acad Sci U S A. 2005 Sep 20; 102(38):13473-8.
Dean SO, Rogers SL, Stuurman N, Vale RD, Spudich JA. PMID: 16174742.
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PubMed Mentions:
53 Fields:
Translation:
AnimalsCells
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Molecular requirements for actin-based lamella formation in Drosophila S2 cells. J Cell Biol. 2003 Sep 15; 162(6):1079-88.
Rogers SL, Wiedemann U, Stuurman N, Vale RD. PMID: 12975351.
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PubMed Mentions:
195 Fields:
Translation:
AnimalsCells
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Mitochondrial positioning in fission yeast is driven by association with dynamic microtubules and mitotic spindle poles. Proc Natl Acad Sci U S A. 2003 Sep 30; 100(20):11424-8.
Yaffe MP, Stuurman N, Vale RD. PMID: 12972644.
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PubMed Mentions:
25 Fields:
Translation:
AnimalsCells
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Role of phosphatidylinositol(4,5)bisphosphate organization in membrane transport by the Unc104 kinesin motor. Cell. 2002 May 03; 109(3):347-58.
Klopfenstein DR, Tomishige M, Stuurman N, Vale RD. PMID: 12015984.
View in:
PubMed Mentions:
113 Fields:
Translation:
AnimalsCells
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In vivo association of lamins with nucleic acids in Drosophila melanogaster. J Cell Sci. 1998 Jan; 111 ( Pt 1):121-9.
Rzepecki R, Bogachev SS, Kokoza E, Stuurman N, Fisher PA. PMID: 9394018.
View in:
PubMed Mentions:
19 Fields:
Translation:
AnimalsCells
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Binding of matrix attachment regions to nuclear lamin is mediated by the rod domain and depends on the lamin polymerization state. FEBS Lett. 1996 Feb 12; 380(1-2):161-4.
Zhao K, Harel A, Stuurman N, Guedalia D, Gruenbaum Y. PMID: 8603728.
View in:
PubMed Mentions:
25 Fields:
Translation:
AnimalsCells