Vaibhav Upadhyay, MD, PhD
|
| Title(s) | Assistant Professor, Medicine |
|---|
| School | School of Medicine |
|---|
| Address | 513 Parnassus Avenue, HSW, #1526
San Francisco CA 94143
|
|---|
| Phone | 415-476-1528 ext. 2129 |
|---|
ORCID
.gif) | 0000-0002-7652-1043  |
|---|
| vCard | Download vCard |
|---|
|
|
Biography
| University of Chicago, Chicago | MD | 2015 | Medicine |
| University of Chicago, Chicago | PhD | 2013 | Immunology |
| Duke University, Durham | BS | 2007 | Biochemistry |
| UCSF, San Francisco | | 2018 | Internal Medicine |
| UCSF, San Francisco | | 2021 | Pulmonary and Critical Care |
| UCSF, San Francisco | Chief Fellow | 2021 | Pulmonary and Critical Care |
| Duke University | 2006 | | Phi Beta Kappa |
| Duke University | 2006 | | American Chemistry Society Analytical Division Undergraduate Award |
| Duke University | 2007 | | Summa cum laude |
| ASCI/APSA Conference | 2012 | | Best Poster |
| American Association of Immunologists | 2012 | | Travel award |
| Keystone Symposia | 2013 | | Travel scholarship |
| University of Chicago, Committee on Immunology | 2013 | | Best Dissertation |
| University of Chicago | 2014 | | Alpha omega alpha |
| University of Chicago, Pritzker School of Medicine | 2015 | | Graduation with Honors |
| University of Chicago, Pritzker School of Medicine | 2015 | | John Van Prohaska Award |
| University of Chicago, Prtizker School of Medicine | 2015 | | Best poster describing basic science investgiation |
| UCSF, Internal Medicine Residency | 2018 | | Jeffrey Weingarten Award |
| UCSF Resident Research Symposium | 2018 | | Abstract selected for oral presentation |
| ZSFG Department of Medicine | 2019 | | Nominated for Clinical Fellow of the Year (one of a group of finalists) |
| UCSF Department of Medicine | 2019 | | Pulmonary Division Clinical Fellow Award |
| UCSF Department of Medicine | 2020 | | Pulmonary Division Clinical Fellow Award |
| UCSF Department of Medicine | 2020 | | UCSF Fellows Leadership Cohort |
| UCSF Pulmonary and Critical Care Division | 2021 | | Jeffrey Golden Outstanding Clinical Fellow Award |
| ATS | 2022 | | ATS RCMB Abstract Scholarship |
Overview
I'm a K08 funded physician scientist studying impact of gut microorganisms on human health and applying multi-omic technologies to the study of chronic diseases with clinical focus in pulmonary medicine.
Research
ORNG Applications
Bibliographic
Altmetrics Details
PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media.
(Note that publications are often cited in additional ways that are not shown here.)
Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication.
Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication.
Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.)
Click a Field or Translation tag to filter the publications.
-
Cell-Type Specificity of Mosaic Chromosome 1q Gain Resolved by snRNA-seq in a Case of Epilepsy With Hyaline Protoplasmic Astrocytopathy. Neurol Genet. 2024 Apr; 10(2):e200142.
Leng K, Cadwell CR, Devine WP, Tihan T, Qi Z, Singhal NS, Glenn OA, Kamiya S, Wiita AP, Berger AC, Shieh JT, Titus EW, Paredes MF, Upadhyay V. PMID: 38586598; PMCID: PMC10997208.
View in:
PubMed Mentions:
-
Cell type specificity of mosaic chromosome 1q gain resolved by snRNA-seq in a case of epilepsy with hyaline protoplasmic astrocytopathy. bioRxiv. 2024 Jan 25.
Leng K, Cadwell CR, Patrick Devine W, Tihan T, Qi Z, Singhal N, Glenn O, Kamiya S, Wiita A, Berger A, Shieh JT, Titus EW, Paredes MF, Upadhyay V. PMID: 38328093; PMCID: PMC10849466.
View in:
PubMed Mentions:
-
Rationale and protocol for a safety, tolerability and feasibility randomized, parallel group, double-blind, placebo-controlled, pilot study of a novel ketone ester targeting frailty via immunometabolic geroscience mechanisms. medRxiv. 2023 Oct 26.
Stubbs BJ, Alvarez-Azanedo G, Peralta S, Roa-Diaz S, Gray W, Alexander L, Silverman-Martin W, Garcia T, Blonquist TM, Upadhyay V, Turnbaugh PJ, Johnson JB, Newman JC. PMID: 37961234; PMCID: PMC10635199.
View in:
PubMed Mentions:
-
Variety of Fruit and Vegetables and Alcohol Intake are Associated with Gut Microbial Species and Gene Abundance in Colorectal Cancer Survivors. Am J Clin Nutr. 2023 09; 118(3):518-529.
Kyaw TS, Upadhyay V, Tolstykh I, Van Loon K, Laffan A, Stanfield D, Gempis D, Kenfield SA, Chan JM, Piawah S, Atreya CE, Ng K, Venook A, Kidder W, Turnbaugh PJ, Van Blarigan EL. PMID: 37474105; PMCID: PMC10550847.
View in:
PubMed Mentions:
1 Fields:
Translation:
HumansAnimals
-
Mild SARS-CoV-2 infection results in long-lasting microbiota instability. mBio. 2023 08 31; 14(4):e0088923.
Upadhyay V, Suryawanshi RK, Tasoff P, McCavitt-Malvido M, Kumar RG, Murray VW, Noecker C, Bisanz JE, Hswen Y, Ha CWY, Sreekumar B, Chen IP, Lynch SV, Ott M, Lee S, Turnbaugh PJ. PMID: 37294090; PMCID: PMC10470529.
View in:
PubMed Mentions:
3 Fields:
Translation:
AnimalsCells
-
Mild SARS-CoV-2 infection results in long-lasting microbiota instability. bioRxiv. 2022 Dec 08.
Upadhyay V, Suryawanshi R, Tasoff P, McCavitt-Malvido M, Kumar GR, Murray VW, Noecker C, Bisanz JE, Hswen Y, Ha C, Sreekumar B, Chen IP, Lynch SV, Ott M, Lee S, Turnbaugh PJ. PMID: 36523400; PMCID: PMC9753784.
View in:
PubMed Mentions:
2
-
nicX-ing bad habits with your microbial friends. Nat Metab. 2022 Nov; 4(11):1442-1443.
Upadhyay V, Turnbaugh PJ. PMID: 36333489.
View in:
PubMed Mentions: Fields:
Translation:
Humans
-
View in:
PubMed Mentions:
58 Fields:
Translation:
HumansAnimalsCells
-
Reporting guidelines for human microbiome research: the STORMS checklist. Nat Med. 2021 11; 27(11):1885-1892.
Mirzayi C, Renson A, Genomic Standards Consortium, Massive Analysis and Quality Control Society, Zohra F, Elsafoury S, Geistlinger L, Kasselman LJ, Eckenrode K, van de Wijgert J, Loughman A, Marques FZ, MacIntyre DA, Arumugam M, Azhar R, Beghini F, Bergstrom K, Bhatt A, Bisanz JE, Braun J, Bravo HC, Buck GA, Bushman F, Casero D, Clarke G, Collado MC, Cotter PD, Cryan JF, Demmer RT, Devkota S, Elinav E, Escobar JS, Fettweis J, Finn RD, Fodor AA, Forslund S, Franke A, Furlanello C, Gilbert J, Grice E, Haibe-Kains B, Handley S, Herd P, Holmes S, Jacobs JP, Karstens L, Knight R, Knights D, Koren O, Kwon DS, Langille M, Lindsay B, McGovern D, McHardy AC, McWeeney S, Mueller NT, Nezi L, Olm M, Palm N, Pasolli E, Raes J, Redinbo MR, Rühlemann M, Balfour Sartor R, Schloss PD, Schriml L, Segal E, Shardell M, Sharpton T, Smirnova E, Sokol H, Sonnenburg JL, Srinivasan S, Thingholm LB, Turnbaugh PJ, Upadhyay V, Walls RL, Wilmes P, Yamada T, Zeller G, Zhang M, Zhao N, Zhao L, Bao W, Culhane A, Devanarayan V, Dopazo J, Fan X, Fischer M, Jones W, Kusko R, Mason CE, Mercer TR, Sansone SA, Scherer A, Shi L, Thakkar S, Tong W, Wolfinger R, Hunter C, Segata N, Huttenhower C, Dowd JB, Jones HE, Waldron L. PMID: 34789871; PMCID: PMC9105086.
View in:
PubMed Mentions:
99 Fields:
Translation:
Humans
-
The East Asian gut microbiome is distinct from colocalized White subjects and connected to metabolic health. Elife. 2021 10 07; 10.
Ang QY, Alba DL, Upadhyay V, Bisanz JE, Cai J, Lee HL, Barajas E, Wei G, Noecker C, Patterson AD, Koliwad SK, Turnbaugh PJ. PMID: 34617511; PMCID: PMC8612731.
View in:
PubMed Mentions:
20 Fields:
Translation:
Cells
-
-
Ketogenic Diets Alter the Gut Microbiome Resulting in Decreased Intestinal Th17 Cells. Cell. 2020 06 11; 181(6):1263-1275.e16.
Ang QY, Alexander M, Newman JC, Tian Y, Cai J, Upadhyay V, Turnbaugh JA, Verdin E, Hall KD, Leibel RL, Ravussin E, Rosenbaum M, Patterson AD, Turnbaugh PJ. PMID: 32437658; PMCID: PMC7293577.
View in:
PubMed Mentions:
187 Fields:
Translation:
HumansAnimalsCells
-
Meta-Analysis Reveals Reproducible Gut Microbiome Alterations in Response to a High-Fat Diet. Cell Host Microbe. 2019 08 14; 26(2):265-272.e4.
Bisanz JE, Upadhyay V, Turnbaugh JA, Ly K, Turnbaugh PJ. PMID: 31324413; PMCID: PMC6708278.
View in:
PubMed Mentions:
123 Fields:
Translation:
HumansAnimalsCells
-
Interprofessional primary care electronic intervention to reduce hypoglycaemic agent use in high-risk veterans with diabetes. BMJ Open Qual. 2018; 7(3):e000221.
Upadhyay V, Walker E, Govea A, Rife T, Jimenez I, Dulay M, Beaman J. PMID: 30272031; PMCID: PMC6157516.
View in:
PubMed Mentions:
1 Fields:
-
Type 3 innate lymphoid cell-derived lymphotoxin prevents microbiota-dependent inflammation. Cell Mol Immunol. 2018 07; 15(7):697-709.
Zhang Y, Kim TJ, Wroblewska JA, Tesic V, Upadhyay V, Weichselbaum RR, Tumanov AV, Tang H, Guo X, Tang H, Fu YX. PMID: 28579615; PMCID: PMC6123485.
View in:
PubMed Mentions:
8 Fields:
Translation:
AnimalsCells
-
Innate lymphoid cells facilitate NK cell development through a lymphotoxin-mediated stromal microenvironment. J Exp Med. 2014 Jun 30; 211(7):1421-31.
Kim TJ, Upadhyay V, Kumar V, Lee KM, Fu YX. PMID: 24913234; PMCID: PMC4076579.
View in:
PubMed Mentions:
9 Fields:
Translation:
AnimalsCells
-
Lymphotoxin organizes contributions to host defense and metabolic illness from innate lymphoid cells. Cytokine Growth Factor Rev. 2014 Apr; 25(2):227-33.
Upadhyay V, Fu YX. PMID: 24411493; PMCID: PMC3999173.
View in:
PubMed Mentions:
9 Fields:
Translation:
HumansAnimalsCells
-
Linking the microbiota and metabolic disease with lymphotoxin. Int Immunol. 2013 Jul; 25(7):397-403.
Upadhyay V, Fu YX. PMID: 23657002; PMCID: PMC4719164.
View in:
PubMed Mentions:
2 Fields:
Translation:
HumansAnimalsCells
-
From infection to colonization: the role of microbiota in transplantation. Am J Transplant. 2013 Apr; 13(4):829.
Upadhyay V, Fu YX, Bromberg JS. PMID: 23551627; PMCID: PMC3914761.
View in:
PubMed Mentions:
3 Fields:
-
Lymphotoxin signalling in immune homeostasis and the control of microorganisms. Nat Rev Immunol. 2013 Apr; 13(4):270-9.
Upadhyay V, Fu YX. PMID: 23524463; PMCID: PMC3900493.
View in:
PubMed Mentions:
58 Fields:
Translation:
HumansAnimalsCells
-
Lymphotoxin regulates commensal responses to enable diet-induced obesity. Nat Immunol. 2012 Oct; 13(10):947-53.
Upadhyay V, Poroyko V, Kim TJ, Devkota S, Fu S, Liu D, Tumanov AV, Koroleva EP, Deng L, Nagler C, Chang EB, Tang H, Fu YX. PMID: 22922363; PMCID: PMC3718316.
View in:
PubMed Mentions:
69 Fields:
Translation:
AnimalsCells
This graph shows the total number of publications by year. To see the data as text,
click here.
This graph shows the total number of publications by year. To return to the graph,
click here.
| Year | Publications |
|---|
| 2012 | 1 |
| 2013 | 4 |
| 2014 | 1 |
| 2017 | 1 |
| 2018 | 1 |
| 2019 | 1 |
| 2020 | 2 |
| 2021 | 3 |
| 2022 | 2 |
| 2023 | 3 |
| 2024 | 2 |
This graph shows the number and percent of publications by field.
Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
To see the data as text,
click here.
This graph shows the number and percent of publications by field.
Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
To see the data as text,
click here.
newest
oldest
line numbers
double spacing
all authors
publication IDs
With one click, see people who:
See more options in the Advanced Search tab