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Joe Qi, PhD

Title(s)Associate Professor, Laboratory Medicine
SchoolSchool of Medicine
Address185 Berry Street Bldg B
San Francisco CA 94158
Phone415-514-6831
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    University of California, San FranciscoPostdoctoral StudiesGraduate Division

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Acute myeloid leukemia with inv(16)(p13.1q22) and deletion of the 5'MYH11/3'CBFB gene fusion: a report of two cases and literature review. Mol Cytogenet. 2020; 13:4. Lv L, Yu J, Qi Z. PMID: 32015759.
      View in: PubMed   Mentions:
    2. [Introduction of the American Board of Medical Genetics and Genomics (ABMGG) Certification Exams and maintenance of certification]. Zhonghua Yi Xue Yi Chuan Xue Za Zhi. 2019 Jan 10; 36(1):13-22. Qi Z, Xiang B, Tsai AC, Yu J. PMID: 30722087.
      View in: PubMed   Mentions:    Fields:    
    3. Investigating human placentation and pregnancy using first trimester chorionic villi. Placenta. 2018 05; 65:65-75. Hannibal RL, Cardoso-Moreira M, Chetty SP, Lau J, Qi Z, Gonzalez-Maldonado E, Cherry AM, Yu J, Norton ME, Baker JC. PMID: 29908643.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    4. Acute myeloid leukemia with t(14;21) involving RUNX1 and SYNE2: A novel favorable-risk translocation? Cancer Genet. 2017 Oct; 216-217:74-78. Foley N, Van Ziffle J, Yu J, Qi Z, Grenert JP, Yeh I, Bastian B, Kogan S, Mannis GN. PMID: 29025598.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    5. False negative fetal cell free DNA screening for microdeletion syndromes in the presence of an unbalanced translocation involving monosomy 4p. Prenat Diagn. 2017 04; 37(4):420-422. Qi Z, Madaan S, Chetty S, Yu J, Wiita AP. PMID: 28207935.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    6. The human chorion contains definitive hematopoietic stem cells from the fifteenth week of gestation. Development. 2017 04 15; 144(8):1399-1411. Muench MO, Kapidzic M, Gormley M, Gutierrez AG, Ponder KL, Fomin ME, Beyer AI, Stolp H, Qi Z, Fisher SJ, Bárcena A. PMID: 28255007.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    7. False positive cell free DNA screening for microdeletions due to non-pathogenic copy number variants. Prenat Diagn. 2016 Jun; 36(6):584-6. Mather CA, Qi Z, Wiita AP. PMID: 27061292.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    8. YAP Induces Human Naive Pluripotency. Cell Rep. 2016 Mar 15; 14(10):2301-12. Qin H, Hejna M, Liu Y, Percharde M, Wossidlo M, Blouin L, Durruthy-Durruthy J, Wong P, Qi Z, Yu J, Qi LS, Sebastiano V, Song JS, Ramalho-Santos M. PMID: 26947063.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansCells
    9. TALENs Facilitate Single-step Seamless SDF Correction of F508del CFTR in Airway Epithelial Submucosal Gland Cell-derived CF-iPSCs. Mol Ther Nucleic Acids. 2016 Jan 05; 5:e273. Suzuki S, Sargent RG, Illek B, Fischer H, Esmaeili-Shandiz A, Yezzi MJ, Lee A, Yang Y, Kim S, Renz P, Qi Z, Yu J, Muench MO, Beyer AI, Guimarães AO, Ye L, Chang J, Fine EJ, Cradick TJ, Bao G, Rahdar M, Porteus MH, Shuto T, Kai H, Kan YW, Gruenert DC. PMID: 26730810.
      View in: PubMed   Mentions:
    10. Trisomy Xp and partial tetrasomy Xq resulting from gain of a rearranged X chromosome in a female fetus: pathogenic or not? Mol Cytogenet. 2015; 8:53. Yiu M, Qi Z, Ki A, Yu J. PMID: 26213575.
      View in: PubMed   Mentions:
    11. Haploinsufficiency and triploinsensitivity of the same 6p25.1p24.3 region in a family. BMC Med Genomics. 2015 Jul 15; 8:38. Qi Z, Jeng LJ, Slavotinek A, Yu J. PMID: 26174853.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    12. BCL6 expression correlates with the t(1;19) translocation in B-lymphoblastic leukemia. Am J Clin Pathol. 2015 Apr; 143(4):547-57. Deucher AM, Qi Z, Yu J, George TI, Etzell JE. PMID: 25780007.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    13. Self-enforcing feedback activation between BCL6 and pre-B cell receptor signaling defines a distinct subtype of acute lymphoblastic leukemia. Cancer Cell. 2015 Mar 09; 27(3):409-25. Geng H, Hurtz C, Lenz KB, Chen Z, Baumjohann D, Thompson S, Goloviznina NA, Chen WY, Huan J, LaTocha D, Ballabio E, Xiao G, Lee JW, Deucher A, Qi Z, Park E, Huang C, Nahar R, Kweon SM, Shojaee S, Chan LN, Yu J, Kornblau SM, Bijl JJ, Ye BH, Ansel KM, Paietta E, Melnick A, Hunger SP, Kurre P, Tyner JW, Loh ML, Roeder RG, Druker BJ, Burger JA, Milne TA, Chang BH, Müschen M. PMID: 25759025.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCells
    14. Seamless modification of wild-type induced pluripotent stem cells to the natural CCR5?32 mutation confers resistance to HIV infection. Proc Natl Acad Sci U S A. 2014 Jul 01; 111(26):9591-6. Ye L, Wang J, Beyer AI, Teque F, Cradick TJ, Qi Z, Chang JC, Bao G, Muench MO, Yu J, Levy JA, Kan YW. PMID: 24927590.
      View in: PubMed   Mentions: 91     Fields:    Translation:HumansCells
    15. Ago1 Interacts with RNA polymerase II and binds to the promoters of actively transcribed genes in human cancer cells. PLoS Genet. 2013; 9(9):e1003821. Huang V, Zheng J, Qi Z, Wang J, Place RF, Yu J, Li H, Li LC. PMID: 24086155.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansCells
    16. Blood cell-derived induced pluripotent stem cells free of reprogramming factors generated by Sendai viral vectors. Stem Cells Transl Med. 2013 Aug; 2(8):558-66. Ye L, Muench MO, Fusaki N, Beyer AI, Wang J, Qi Z, Yu J, Kan YW. PMID: 23847002.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimalsCells
    17. Transcriptional analysis of pluripotency reveals the Hippo pathway as a barrier to reprogramming. Hum Mol Genet. 2012 May 01; 21(9):2054-67. Qin H, Blaschke K, Wei G, Ohi Y, Blouin L, Qi Z, Yu J, Yeh RF, Hebrok M, Ramalho-Santos M. PMID: 22286172.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansAnimalsCells
    18. Endothelial lipase mediates HDL levels in normal and hyperlipidemic rabbits. J Atheroscler Thromb. 2012; 19(3):213-26. Zhang J, Yu Y, Nakamura K, Koike T, Waqar AB, Zhang X, Liu E, Nishijima K, Kitajima S, Shiomi M, Qi Z, Yu J, Graham MJ, Crooke RM, Ishida T, Hirata K, Hurt-Camejo E, Chen YE, Fan J. PMID: 22240910.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    19. Upregulation of Cyclin B1 by miRNA and its implications in cancer. Nucleic Acids Res. 2012 Feb; 40(4):1695-707. Huang V, Place RF, Portnoy V, Wang J, Qi Z, Jia Z, Yu A, Shuman M, Yu J, Li LC. PMID: 22053081.
      View in: PubMed   Mentions: 111     Fields:    Translation:AnimalsCells
    20. Transgenic expression of entire hepatitis B virus in mice induces hepatocarcinogenesis independent of chronic liver injury. PLoS One. 2011; 6(10):e26240. Na B, Huang Z, Wang Q, Qi Z, Tian Y, Lu CC, Yu J, Hanes MA, Kakar S, Huang EJ, Ou JH, Liu L, Yen TS. PMID: 22022578.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    21. Presence of complex t(6;9;22;15) four-way chromosome rearrangement plus rare t(1;6) translocation with favorable response to imatinib therapy in chronic myelogenous leukemia. Leuk Lymphoma. 2011 Nov; 52(11):2182-4. Lu CM, Zhou L, Feng S, Kohn PH, Qi Z, Yu J. PMID: 21718138.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    22. Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells. Nat Cell Biol. 2011 May; 13(5):541-9. Ohi Y, Qin H, Hong C, Blouin L, Polo JM, Guo T, Qi Z, Downey SL, Manos PD, Rossi DJ, Yu J, Hebrok M, Hochedlinger K, Costello JF, Song JS, Ramalho-Santos M. PMID: 21499256.
      View in: PubMed   Mentions: 244     Fields:    Translation:HumansCells
    23. Generation of induced pluripotent stem cells using site-specific integration with phage integrase. Proc Natl Acad Sci U S A. 2010 Nov 09; 107(45):19467-72. Ye L, Chang JC, Lin C, Qi Z, Yu J, Kan YW. PMID: 20974949.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimalsCells
    24. Methylation-mediated downregulation of the B-cell translocation gene 3 (BTG3) in breast cancer cells. Gene Expr. 2008; 14(3):173-82. Yu J, Zhang Y, Qi Z, Kurtycz D, Vacano G, Patterson D. PMID: 18590053.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    25. Prevalence of the C677T substitution of the methylenetetrahydrofolate reductase (MTHFR) gene in Wisconsin. Genet Med. 2003 Nov-Dec; 5(6):458-9. Qi Z, Hoffman G, Kurtycz D, Yu J. PMID: 14614398.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
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