Steven Mack, PhD

Title(s)Associate Professor, Pediatrics
SchoolSchool of Medicine
Address5700 Martin Luther King Jr Way
Oakland CA 94609
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    Collapse Research 
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    Integrated Exchange and Storage of Current- and Future-Generation Immunogenomic Data
    NIH R01AI128775Mar 1, 2017 - Feb 28, 2022
    Role: Co-Principal Investigator
    Integrated Exchange & Storage of Current and Future-Generation Immunogenomic Data
    NIH R01GM109030Apr 1, 2014 - Feb 28, 2019
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Standard reference sequences for submission of HLA genotyping for the 18th International HLA and Immunogenetics Workshop. HLA. 2021 Jun; 97(6):512-519. Matern BM, Mack SJ, Osoegawa K, Maiers M, Niemann M, Robinson J, Heidt S, Spierings E. PMID: 33719220.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    2. SNP-HLA Reference Consortium (SHLARC): HLA and SNP data sharing for promoting MHC-centric analyses in genomics. Genet Epidemiol. 2020 10; 44(7):733-740. Vince N, Douillard V, Geffard E, Meyer D, Castelli EC, Mack SJ, Limou S, Gourraud PA. PMID: 32681667.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    3. Preface: 17th International HLA and Immunogenetics Workshop. Hum Immunol. 2020 Feb - Mar; 81(2-3):52-58. Vayntrub TA, Mack SJ, Fernandez-Viña MA. PMID: 32051104.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    4. HLA alleles and haplotypes observed in 263 US families. Hum Immunol. 2019 Sep; 80(9):644-660. Osoegawa K, Mallempati KC, Gangavarapu S, Oki A, Gendzekhadze K, Marino SR, Brown NK, Bettinotti MP, Weimer ET, Montero-Martín G, Creary LE, Vayntrub TA, Chang CJ, Askar M, Mack SJ, Fernández-Viña MA. PMID: 31256909.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    5. Correction: High resolution HLA analysis reveals independent class I haplotypes and amino-acid motifs protective for multiple sclerosis. Genes Immun. 2019 04; 20(4):340. Mack SJ, Udell J, Cohen F, Osoegawa K, Hawbecker SK, Noonan DA, Ladner MB, Goodridge D, Trachtenberg EA, Oksenberg JR, Erlich HA. PMID: 29915315.
      View in: PubMed   Mentions: 1     Fields:    
    6. Quality control project of NGS HLA genotyping for the 17th International HLA and Immunogenetics Workshop. Hum Immunol. 2019 Apr; 80(4):228-236. Osoegawa K, Vayntrub TA, Wenda S, De Santis D, Barsakis K, Ivanova M, Hsu S, Barone J, Holdsworth R, Diviney M, Askar M, Willis A, Railton D, Laflin S, Gendzekhadze K, Oki A, Sacchi N, Mazzocco M, Andreani M, Ameen R, Stavropoulos-Giokas C, Dinou A, Torres M, Dos Santos Francisco R, Serra-Pages C, Goodridge D, Balladares S, Bettinotti MP, Iglehart B, Kashi Z, Martin R, Saw CL, Ragoussis J, Downing J, Navarrete C, Chong W, Saito K, Petrek M, Tokic S, Padros K, Beatriz Rodriguez M, Zakharova V, Shragina O, Marino SR, Brown NK, Shiina T, Suzuki S, Spierings E, Zhang Q, Yin Y, Morris GP, Hernandez A, Ruiz P, Khor SS, Tokunaga K, Geretz A, Thomas R, Yamamoto F, Mallempati KC, Gangavarapu S, Kanga U, Tyagi S, Marsh SGE, Bultitude WP, Liu X, Cao D, Penning M, Hurley CK, Cesbron A, Mueller C, Mytilineos J, Weimer ET, Bengtsson M, Fischer G, Hansen JA, Chang CJ, Mack SJ, Creary LE, Fernandez-Viña MA. PMID: 30738112.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    7. Tools for building, analyzing and evaluating HLA haplotypes from families. Hum Immunol. 2019 Sep; 80(9):633-643. Osoegawa K, Mack SJ, Prestegaard M, Fernández-Viña MA. PMID: 30735756.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    8. Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 496 adults from San Diego, California, USA. Hum Immunol. 2018 Dec; 79(12):821-822. Moore E, Grifoni A, Weiskopf D, Schulten V, Arlehamn CSL, Angelo M, Pham J, Leary S, Sidney J, Broide D, Frazier A, Phillips E, Mallal S, Mack SJ, Sette A. PMID: 30278218.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    9. High resolution HLA analysis reveals independent class I haplotypes and amino-acid motifs protective for multiple sclerosis. Genes Immun. 2019 04; 20(4):308-326. Mack SJ, Udell J, Cohen F, Osoegawa K, Hawbecker SK, Noonan DA, Ladner MB, Goodridge D, Trachtenberg EA, Oksenberg JR, Erlich HA. PMID: 29307888.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    10. Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 714 adults from Colombo, Sri Lanka. Hum Immunol. 2018 Feb; 79(2):87-88. Grifoni A, Weiskopf D, Lindestam Arlehamn CS, Angelo M, Leary S, Sidney J, Frazier A, Phillips E, Mallal S, Mack SJ, Tippalagama R, Goonewardana S, Premawansa S, Premawansa G, Wijewickrama A, De Silva AD, Sette A. PMID: 29289740.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    11. Collection and storage of HLA NGS genotyping data for the 17th International HLA and Immunogenetics Workshop. Hum Immunol. 2018 Feb; 79(2):77-86. Chang CJ, Osoegawa K, Milius RP, Maiers M, Xiao W, Fernandez-Vina M, Mack SJ. PMID: 29247682.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    12. Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 339 adults from Managua, Nicaragua. Hum Immunol. 2018 Jan; 79(1):1-2. Weiskopf D, Grifoni A, Arlehamn CSL, Angelo M, Leary S, Sidney J, Frazier A, Mack SJ, Phillips E, Mallal S, Cerpas C, Balmaseda A, Harris E, Sette A. PMID: 29122684.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    13. Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 100 Luo infants from the Boro area of Nyanza Province, Kenya. Hum Immunol. 2017 Apr; 78(4):325-326. Arlehamn CS, Copin R, Leary S, Mack SJ, Phillips E, Mallal S, Sette A, Blatner G, Siefers H, Ernst JD, TBRU-ASTRa Study Team . PMID: 28315719.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    14. Update on short population reports. Hum Immunol. 2016 Aug; 77(8):617. Mack SJ, Middleton D. PMID: 27449832.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    15. Bridging ImmunoGenomic Data Analysis Workflow Gaps (BIGDAWG): An integrated case-control analysis pipeline. Hum Immunol. 2016 Mar; 77(3):283-287. Pappas DJ, Marin W, Hollenbach JA, Mack SJ. PMID: 26708359.
      View in: PubMed   Mentions: 22     Fields:    Translation:Humans
    16. The GL service: Web service to exchange GL string encoded HLA & KIR genotypes with complete and accurate allele and genotype ambiguity. Hum Immunol. 2016 Mar; 77(3):249-256. Milius RP, Heuer M, George M, Pollack J, Hollenbach JA, Mack SJ, Maiers M. PMID: 26621609.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    17. HLA Haplotype Validator for quality assessments of HLA typing. Hum Immunol. 2016 Mar; 77(3):273-282. Osoegawa K, Mack SJ, Udell J, Noonan DA, Ozanne S, Trachtenberg E, Prestegaard M. PMID: 26546873.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    18. A gene feature enumeration approach for describing HLA allele polymorphism. Hum Immunol. 2015 Dec; 76(12):975-81. Mack SJ. PMID: 26416087.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    19. Minimum information for reporting next generation sequence genotyping (MIRING): Guidelines for reporting HLA and KIR genotyping via next generation sequencing. Hum Immunol. 2015 Dec; 76(12):954-62. Mack SJ, Milius RP, Gifford BD, Sauter J, Hofmann J, Osoegawa K, Robinson J, Groeneweg M, Turenchalk GS, Adai A, Holcomb C, Rozemuller EH, Penning MT, Heuer ML, Wang C, Salit ML, Schmidt AH, Parham PR, Müller C, Hague T, Fischer G, Fernandez-Vina M, Hollenbach JA, Norman PJ, Maiers M. PMID: 26407912.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    20. Histoimmunogenetics Markup Language 1.0: Reporting next generation sequencing-based HLA and KIR genotyping. Hum Immunol. 2015 Dec; 76(12):963-74. Milius RP, Heuer M, Valiga D, Doroschak KJ, Kennedy CJ, Bolon YT, Schneider J, Pollack J, Kim HR, Cereb N, Hollenbach JA, Mack SJ, Maiers M. PMID: 26319908.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    21. Introducing a new manuscript format: Enabling access to immunogenomic population data with short population reports. Hum Immunol. 2015 Jun; 76(6):393-4. Mack SJ, Middleton D. PMID: 25842055.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    22. HLA-DPB1 and HLA class I confer risk of and protection from narcolepsy. Am J Hum Genet. 2015 Jan 08; 96(1):136-46. Ollila HM, Ravel JM, Han F, Faraco J, Lin L, Zheng X, Plazzi G, Dauvilliers Y, Pizza F, Hong SC, Jennum P, Knudsen S, Kornum BR, Dong XS, Yan H, Hong H, Coquillard C, Mahlios J, Jolanki O, Einen M, Arnulf I, Lavault S, Högl B, Frauscher B, Crowe C, Partinen M, Huang YS, Bourgin P, Vaarala O, Désautels A, Montplaisir J, Mack SJ, Mindrinos M, Fernandez-Vina M, Mignot E. PMID: 25574827.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    23. Genome-wide association study and admixture mapping reveal new loci associated with total IgE levels in Latinos. J Allergy Clin Immunol. 2015 Jun; 135(6):1502-10. Pino-Yanes M, Gignoux CR, Galanter JM, Levin AM, Campbell CD, Eng C, Huntsman S, Nishimura KK, Gourraud PA, Mohajeri K, O'Roak BJ, Hu D, Mathias RA, Nguyen EA, Roth LA, Padhukasahasram B, Moreno-Estrada A, Sandoval K, Winkler CA, Lurmann F, Davis A, Farber HJ, Meade K, Avila PC, Serebrisky D, Chapela R, Ford JG, Lenoir MA, Thyne SM, Brigino-Buenaventura E, Borrell LN, Rodriguez-Cintron W, Sen S, Kumar R, Rodriguez-Santana JR, Bustamante CD, Martinez FD, Raby BA, Weiss ST, Nicolae DL, Ober C, Meyers DA, Bleecker ER, Mack SJ, Hernandez RD, Eichler EE, Barnes KC, Williams LK, Torgerson DG, Burchard EG. PMID: 25488688.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    24. Human immunology in the era of big data. Hum Immunol. 2014 Jan; 75(1):2-3. Mack SJ. PMID: 24333353.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    25. A sequence-based approach demonstrates that balancing selection in classical human leukocyte antigen (HLA) loci is asymmetric. Hum Mol Genet. 2013 Jan 15; 22(2):252-61. Bronson PG, Mack SJ, Erlich HA, Slatkin M. PMID: 23065702.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    26. Tracking human migrations by the analysis of the distribution of HLA alleles, lineages and haplotypes in closed and open populations. Philos Trans R Soc Lond B Biol Sci. 2012 Mar 19; 367(1590):820-9. Fernandez Vina MA, Hollenbach JA, Lyke KE, Sztein MB, Maiers M, Klitz W, Cano P, Mack S, Single R, Brautbar C, Israel S, Raimondi E, Khoriaty E, Inati A, Andreani M, Testi M, Moraes ME, Thomson G, Stastny P, Cao K. PMID: 22312049.
      View in: PubMed   Mentions: 35     Fields:    Translation:Humans
    27. Analytical methods for disease association studies with immunogenetic data. Methods Mol Biol. 2012; 882:245-66. Hollenbach JA, Mack SJ, Thomson G, Gourraud PA. PMID: 22665238.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    28. Standard methods for the management of immunogenetic data. Methods Mol Biol. 2012; 882:197-213. Gourraud PA, Hollenbach JA, Barnetche T, Single RM, Mack SJ. PMID: 22665236.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    29. Analytical methods for immunogenetic population data. Methods Mol Biol. 2012; 882:215-44. Mack SJ, Gourraud PA, Single RM, Thomson G, Hollenbach JA. PMID: 22665237.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    30. The CWD allele catalog in China. Hum Immunol. 2012 Jan; 73(1):60. Cano P, Mack SJ, Fernández-Viña M. PMID: 22056614.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    31. Immunogenetics as a tool in anthropological studies. Immunology. 2011 Jun; 133(2):143-64. Sanchez-Mazas A, Fernandez-Viña M, Middleton D, Hollenbach JA, Buhler S, Di D, Rajalingam R, Dugoujon JM, Mack SJ, Thorsby E. PMID: 21480890.
      View in: PubMed   Mentions: 33     Fields:    Translation:Humans
    32. Human leukocyte antigen-A, -B, -C, -DRB1 allele and haplotype frequencies in Americans originating from southern Europe: contrasting patterns of population differentiation between Italian and Spanish Americans. Hum Immunol. 2011 Feb; 72(2):144-9. Mack SJ, Tu B, Yang R, Masaberg C, Ng J, Hurley CK. PMID: 20974205.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    33. Sequence feature variant type (SFVT) analysis of the HLA genetic association in juvenile idiopathic arthritis. Pac Symp Biocomput. 2010; 359-70. Thomson G, Marthandan N, Hollenbach JA, Mack SJ, Erlich HA, Single RM, Waller MJ, Marsh SG, Guidry PA, Karp DR, Scheuermann RH, Thompson SD, Glass DN, Helmberg W. PMID: 19908388.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    34. Balancing selection and heterogeneity across the classical human leukocyte antigen loci: a meta-analytic review of 497 population studies. Hum Immunol. 2008 Jul; 69(7):443-64. Solberg OD, Mack SJ, Lancaster AK, Single RM, Tsai Y, Sanchez-Mazas A, Thomson G. PMID: 18638659.
      View in: PubMed   Mentions: 108     Fields:    Translation:Humans
    35. Genetic origin of the Swedish Sami inferred from HLA class I and class II allele frequencies. Eur J Hum Genet. 2008 Nov; 16(11):1341-9. Johansson A, Ingman M, Mack SJ, Erlich H, Gyllensten U. PMID: 18478041.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    36. HLA haplotypes in Singapore: a study of mothers and their cord blood units. Hum Immunol. 2007 May; 68(5):430-8. Tang TF, Hou L, Chen M, Belle I, Mack S, Lancaster A, Ho GY, Hwang WY, Alsagoff F, Ng J, Hurley CK. PMID: 17462511.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    37. Common and well-documented HLA alleles: report of the Ad-Hoc committee of the american society for histocompatiblity and immunogenetics. Hum Immunol. 2007 May; 68(5):392-417. Cano P, Klitz W, Mack SJ, Maiers M, Marsh SG, Noreen H, Reed EF, Senitzer D, Setterholm M, Smith A, Fernández-Viña M. PMID: 17462507.
      View in: PubMed   Mentions: 63     Fields:    Translation:Humans
    38. Signatures of demographic history and natural selection in the human major histocompatibility complex Loci. Genetics. 2006 Aug; 173(4):2121-42. Meyer D, Single RM, Mack SJ, Erlich HA, Thomson G. PMID: 16702436.
      View in: PubMed   Mentions: 39     Fields:    Translation:Humans
    39. Association of HLA class I and II alleles and extended haplotypes with nasopharyngeal carcinoma in Taiwan. J Natl Cancer Inst. 2002 Dec 04; 94(23):1780-9. Hildesheim A, Apple RJ, Chen CJ, Wang SS, Cheng YJ, Klitz W, Mack SJ, Chen IH, Hsu MM, Yang CS, Brinton LA, Levine PH, Erlich HA. PMID: 12464650.
      View in: PubMed   Mentions: 73     Fields:    Translation:Humans
    40. HLA antigens, alleles and haplotypes among the Yup'ik Alaska natives: report of the ASHI Minority Workshops, Part II. Hum Immunol. 2002 Jul; 63(7):614-25. Leffell MS, Fallin MD, Erlich HA, Fernandez-Vina M, Hildebrand WH, Mack SJ, Zachary AA. PMID: 12072196.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
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