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Diane Barber, PhD

TitleProfessor
SchoolUCSF School of Dentistry
DepartmentCell and Tissue Biology
Address513 Parnassus Ave
San Francisco CA 94143
Phone415-476-3764
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    Collapse Research 
    Collapse Research Activities and Funding
    Roles for Intracellular pH Dynamics in Cancer
    NIH/NCI R01CA197855Jun 1, 2016 - May 31, 2021
    Role: Principal Investigator
    Regulation of Epithelial Plasticity
    NIH/NIGMS R01GM116384Jul 1, 2015 - Jun 30, 2019
    Role: Principal Investigator
    Retention of somatic mutations in cancers by changes in pH sensing
    NIH/NCI R21CA178706Jul 1, 2013 - Jun 30, 2015
    Role: Principal Investigator
    Mechanotransduction in Fibroblast
    NIH/NIGMS R01GM071526Feb 1, 2007 - Sep 30, 2011
    Role: Principal Investigator
    Actions of the Sodium-Hydrogen Exchanger Subtype, NHE1
    NIH/NIGMS R01GM058642Aug 1, 1999 - Nov 30, 2013
    Role: Principal Investigator
    Mechanisms of Receptor Regulated Na+-H+ Exchange
    NIH/NIGMS R01GM047413Jan 1, 1993 - May 31, 2015
    Role: Principal Investigator
    MECHANISMS REGULATING INTESTINAL NEUROTENSIN EXPRESSION
    NIH/NIDDK R01DK041371May 1, 1989 - Apr 30, 1993
    Role: Principal Investigator
    SIGNALING MECHANISMS OF SOMATOSTATIN RECEPTORS
    NIH/NIDDK R01DK040259Sep 21, 1987 - Dec 31, 2002
    Role: Principal Investigator
    REGULATION OF NEUROTENSIN-CONTAINING ENTERIC CELLS
    NIH/NIDDK R29DK040259Sep 21, 1987 - Mar 31, 1993
    Role: Principal Investigator
    VIP RELEASE FROM ENTERIC NEURONS IN CULTURE
    NIH/NIDDK F32DK007662Sep 1, 1986
    Role: Principal Investigator
    VIP RELEASE FROM ENTERIC NEURONS IN CULTURE
    NIH/NIADDK F32AM007662Sep 1, 1985
    Role: Principal Investigator

    Collapse ORNG Applications 
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    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. White KA, Ruiz DG, Szpiech ZA, Strauli NB, Hernandez RD, Jacobson MP, Barber DL. Cancer-associated arginine-to-histidine mutations confer a gain in pH sensing to mutant proteins. Sci Signal. 2017 Sep 05; 10(495). PMID: 28874603.
      View in: PubMed
    2. Szpiech ZA, Strauli NB, White KA, Ruiz DG, Jacobson MP, Barber DL, Hernandez RD. Prominent features of the amino acid mutation landscape in cancer. PLoS One. 2017; 12(8):e0183273. PMID: 28837668.
      View in: PubMed
    3. Webb BA, Dosey AM, Wittmann T, Kollman JM, Barber DL. The glycolytic enzyme phosphofructokinase-1 assembles into filaments. J Cell Biol. 2017 Aug 07; 216(8):2305-2313. PMID: 28646105.
      View in: PubMed
    4. White KA, Grillo-Hill BK, Barber DL. Cancer cell behaviors mediated by dysregulated pH dynamics at a glance. J Cell Sci. 2017 Feb 15; 130(4):663-669. PMID: 28202602.
      View in: PubMed
    5. Ulmschneider B, Grillo-Hill BK, Benitez M, Azimova DR, Barber DL, Nystul TG. Increased intracellular pH is necessary for adult epithelial and embryonic stem cell differentiation. J Cell Biol. 2016 Nov 7; 215(3):345-355. PMID: 27821494.
      View in: PubMed
    6. Webb BA, Forouhar F, Szu FE, Seetharaman J, Tong L, Barber DL. Structures of human phosphofructokinase-1 and atomic basis of cancer-associated mutations. Nature. 2015 Jul 2; 523(7558):111-4. PMID: 25985179; PMCID: PMC4510984 [Available on 01/02/16].
    7. Grillo-Hill BK, Choi C, Jimenez-Vidal M, Barber DL. Increased H? efflux is sufficient to induce dysplasia and necessary for viability with oncogene expression. Elife. 2015; 4. PMID: 25793441; PMCID: PMC4392478.
    8. Rana MK, Srivastava J, Yang M, Chen CS, Barber DL. Hypoxia increases the abundance but not the assembly of extracellular fibronectin during epithelial cell transdifferentiation. J Cell Sci. 2015 Mar 15; 128(6):1083-9. PMID: 25616899; PMCID: PMC4359919 [Available on 03/15/16].
    9. LeClaire LL, Rana M, Baumgartner M, Barber DL. The Nck-interacting kinase NIK increases Arp2/3 complex activity by phosphorylating the Arp2 subunit. J Cell Biol. 2015 Jan 19; 208(2):161-70. PMID: 25601402; PMCID: PMC4298681.
    10. Broz ML, Binnewies M, Boldajipour B, Nelson AE, Pollack JL, Erle DJ, Barczak A, Rosenblum MD, Daud A, Barber DL, Amigorena S, Van't Veer LJ, Sperling AI, Wolf DM, Krummel MF. Dissecting the tumor myeloid compartment reveals rare activating antigen-presenting cells critical for T cell immunity. Cancer Cell. 2014 Nov 10; 26(5):638-52. PMID: 25446897; PMCID: PMC4254577.
    11. Grillo-Hill BK, Webb BA, Barber DL. Ratiometric imaging of pH probes. Methods Cell Biol. 2014; 123:429-48. PMID: 24974041.
      View in: PubMed
    12. Choi CH, Webb BA, Chimenti MS, Jacobson MP, Barber DL. pH sensing by FAK-His58 regulates focal adhesion remodeling. J Cell Biol. 2013 Sep 16; 202(6):849-59. PMID: 24043700; PMCID: PMC3776353.
    13. Crevenna AH, Naredi-Rainer N, Schönichen A, Dzubiella J, Barber DL, Lamb DC, Wedlich-Söldner R. Electrostatics control actin filament nucleation and elongation kinetics. J Biol Chem. 2013 Apr 26; 288(17):12102-13. PMID: 23486468; PMCID: PMC3636895.
    14. Schönichen A, Webb BA, Jacobson MP, Barber DL. Considering protonation as a posttranslational modification regulating protein structure and function. Annu Rev Biophys. 2013; 42:289-314. PMID: 23451893; PMCID: PMC4041481.
    15. Choi CH, Thomason PA, Zaki M, Insall RH, Barber DL. Phosphorylation of actin-related protein 2 (Arp2) is required for normal development and cAMP chemotaxis in Dictyostelium. J Biol Chem. 2013 Jan 25; 288(4):2464-74. PMID: 23223240; PMCID: PMC3554915.
    16. Nunomura W, Denker SP, Barber DL, Takakuwa Y, Gascard P. Characterization of cytoskeletal protein 4.1R interaction with NHE1 (Na(+)/H(+) exchanger isoform 1). Biochem J. 2012 Sep 15; 446(3):427-35. PMID: 22731252; PMCID: PMC4338608.
    17. Narayanan A, LeClaire LL, Barber DL, Jacobson MP. Phosphorylation of the Arp2 subunit relieves auto-inhibitory interactions for Arp2/3 complex activation. PLoS Comput Biol. 2011 Nov; 7(11):e1002226. PMID: 22125478; PMCID: PMC3220268.
    18. Haynes J, Srivastava J, Madson N, Wittmann T, Barber DL. Dynamic actin remodeling during epithelial-mesenchymal transition depends on increased moesin expression. Mol Biol Cell. 2011 Dec; 22(24):4750-64. PMID: 22031288; PMCID: PMC3237619.
    19. Webb BA, Chimenti M, Jacobson MP, Barber DL. Dysregulated pH: a perfect storm for cancer progression. Nat Rev Cancer. 2011 Sep; 11(9):671-7. PMID: 21833026.
      View in: PubMed
    20. Bandyopadhyay S, Chiang CY, Srivastava J, Gersten M, White S, Bell R, Kurschner C, Martin C, Smoot M, Sahasrabudhe S, Barber DL, Chanda SK, Ideker T. A human MAP kinase interactome. Nat Methods. 2010 Oct; 7(10):801-5. PMID: 20936779; PMCID: PMC2967489.
    21. Jiménez-Vidal M, Srivastava J, Putney LK, Barber DL. Nuclear-localized calcineurin homologous protein CHP1 interacts with upstream binding factor and inhibits ribosomal RNA synthesis. J Biol Chem. 2010 Nov 19; 285(47):36260-6. PMID: 20720019; PMCID: PMC2978553.
    22. Choi CH, Patel H, Barber DL. Expression of actin-interacting protein 1 suppresses impaired chemotaxis of Dictyostelium cells lacking the Na+-H+ exchanger NHE1. Mol Biol Cell. 2010 Sep 15; 21(18):3162-70. PMID: 20668166; PMCID: PMC2938382.
    23. Meima ME, Webb BA, Witkowska HE, Barber DL. The sodium-hydrogen exchanger NHE1 is an Akt substrate necessary for actin filament reorganization by growth factors. J Biol Chem. 2009 Sep 25; 284(39):26666-75. PMID: 19622752; PMCID: PMC2785354.
    24. Karydis A, Jimenez-Vidal M, Denker SP, Barber DL. Mislocalized scaffolding by the Na-H exchanger NHE1 dominantly inhibits fibronectin production and TGF-beta activation. Mol Biol Cell. 2009 Apr; 20(8):2327-36. PMID: 19225158; PMCID: PMC2669038.
    25. Frantz C, Barreiro G, Dominguez L, Chen X, Eddy R, Condeelis J, Kelly MJ, Jacobson MP, Barber DL. Cofilin is a pH sensor for actin free barbed end formation: role of phosphoinositide binding. J Cell Biol. 2008 Dec 1; 183(5):865-79. PMID: 19029335; PMCID: PMC2592832.
    26. Srivastava J, Barreiro G, Groscurth S, Gingras AR, Goult BT, Critchley DR, Kelly MJ, Jacobson MP, Barber DL. Structural model and functional significance of pH-dependent talin-actin binding for focal adhesion remodeling. Proc Natl Acad Sci U S A. 2008 Sep 23; 105(38):14436-41. PMID: 18780792; PMCID: PMC2532973.
    27. LeClaire LL, Baumgartner M, Iwasa JH, Mullins RD, Barber DL. Phosphorylation of the Arp2/3 complex is necessary to nucleate actin filaments. J Cell Biol. 2008 Aug 25; 182(4):647-54. PMID: 18725535; PMCID: PMC2518704.
    28. Srivastava J, Barber D. Actin co-sedimentation assay; for the analysis of protein binding to F-actin. J Vis Exp. 2008; (13). PMID: 19066573; PMCID: PMC2586866.
    29. Frantz C, Karydis A, Nalbant P, Hahn KM, Barber DL. Positive feedback between Cdc42 activity and H+ efflux by the Na-H exchanger NHE1 for polarity of migrating cells. J Cell Biol. 2007 Nov 5; 179(3):403-10. PMID: 17984318; PMCID: PMC2064788.
    30. Meima ME, Mackley JR, Barber DL. Beyond ion translocation: structural functions of the sodium-hydrogen exchanger isoform-1. Curr Opin Nephrol Hypertens. 2007 Jul; 16(4):365-72. PMID: 17565280.
      View in: PubMed
    31. Srivastava J, Barber DL, Jacobson MP. Intracellular pH sensors: design principles and functional significance. Physiology (Bethesda). 2007 Feb; 22:30-9. PMID: 17289928.
      View in: PubMed
    32. Baumgartner M, Sillman AL, Blackwood EM, Srivastava J, Madson N, Schilling JW, Wright JH, Barber DL. The Nck-interacting kinase phosphorylates ERM proteins for formation of lamellipodium by growth factors. Proc Natl Acad Sci U S A. 2006 Sep 5; 103(36):13391-6. PMID: 16938849; PMCID: PMC1569174.
    33. Patel H, Barber DL. A developmentally regulated Na-H exchanger in Dictyostelium discoideum is necessary for cell polarity during chemotaxis. J Cell Biol. 2005 Apr 25; 169(2):321-9. PMID: 15851518; PMCID: PMC2171856.
    34. Baumgartner M, Patel H, Barber DL. Na(+)/H(+) exchanger NHE1 as plasma membrane scaffold in the assembly of signaling complexes. Am J Physiol Cell Physiol. 2004 Oct; 287(4):C844-50. PMID: 15355855.
      View in: PubMed
    35. Putney LK, Barber DL. Expression profile of genes regulated by activity of the Na-H exchanger NHE1. BMC Genomics. 2004 Jul 16; 5(1):46. PMID: 15257760; PMCID: PMC499544.
    36. Putney LK, Barber DL. Na-H exchange-dependent increase in intracellular pH times G2/M entry and transition. J Biol Chem. 2003 Nov 7; 278(45):44645-9. PMID: 12947095.
      View in: PubMed
    37. Lin CY, Varma MG, Joubel A, Madabushi S, Lichtarge O, Barber DL. Conserved motifs in somatostatin, D2-dopamine, and alpha 2B-adrenergic receptors for inhibiting the Na-H exchanger, NHE1. J Biol Chem. 2003 Apr 25; 278(17):15128-35. PMID: 12566440.
      View in: PubMed
    38. Denker SP, Barber DL. Cell migration requires both ion translocation and cytoskeletal anchoring by the Na-H exchanger NHE1. J Cell Biol. 2002 Dec 23; 159(6):1087-96. PMID: 12486114; PMCID: PMC2173980.
    39. Buchan AM, Lin CY, Choi J, Barber DL. Somatostatin, acting at receptor subtype 1, inhibits Rho activity, the assembly of actin stress fibers, and cell migration. J Biol Chem. 2002 Aug 9; 277(32):28431-8. PMID: 12045195.
      View in: PubMed
    40. Denker SP, Barber DL. Ion transport proteins anchor and regulate the cytoskeleton. Curr Opin Cell Biol. 2002 Apr; 14(2):214-20. PMID: 11891121.
      View in: PubMed
    41. Putney LK, Denker SP, Barber DL. The changing face of the Na+/H+ exchanger, NHE1: structure, regulation, and cellular actions. Annu Rev Pharmacol Toxicol. 2002; 42:527-52. PMID: 11807182.
      View in: PubMed
    42. Nguyen MH, Ho JM, Beattie BK, Barber DL. TEL-JAK2 mediates constitutive activation of the phosphatidylinositol 3'-kinase/protein kinase B signaling pathway. J Biol Chem. 2001 Aug 31; 276(35):32704-13. PMID: 11435425.
      View in: PubMed
    43. Yan W, Nehrke K, Choi J, Barber DL. The Nck-interacting kinase (NIK) phosphorylates the Na+-H+ exchanger NHE1 and regulates NHE1 activation by platelet-derived growth factor. J Biol Chem. 2001 Aug 17; 276(33):31349-56. PMID: 11369779.
      View in: PubMed
    44. Zhang MY, Barber DL, Alessi DR, Bell LL, Stine C, Nguyen MH, Beattie BK, Cheung JY, Miller BA. A minimal cytoplasmic subdomain of the erythropoietin receptor mediates p70 S6 kinase phosphorylation. Exp Hematol. 2001 Apr; 29(4):432-40. PMID: 11301183.
      View in: PubMed
    45. Denker SP, Huang DC, Orlowski J, Furthmayr H, Barber DL. Direct binding of the Na--H exchanger NHE1 to ERM proteins regulates the cortical cytoskeleton and cell shape independently of H(+) translocation. Mol Cell. 2000 Dec; 6(6):1425-36. PMID: 11163215.
      View in: PubMed
    46. Mason JM, Beattie BK, Liu Q, Dumont DJ, Barber DL. The SH2 inositol 5-phosphatase Ship1 is recruited in an SH2-dependent manner to the erythropoietin receptor. J Biol Chem. 2000 Feb 11; 275(6):4398-406. PMID: 10660611.
      View in: PubMed
    47. Denker SP, Yan W, Barber DL. Effect of Rho GTPases on Na-H exchanger in mammalian cells. Methods Enzymol. 2000; 325:334-48. PMID: 11036616.
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    48. Chaudhry FA, Reimer RJ, Krizaj D, Barber D, Storm-Mathisen J, Copenhagen DR, Edwards RH. Molecular analysis of system N suggests novel physiological roles in nitrogen metabolism and synaptic transmission. Cell. 1999 Dec 23; 99(7):769-80. PMID: 10619430.
      View in: PubMed
    49. Lin X, Sikkink RA, Rusnak F, Barber DL. Inhibition of calcineurin phosphatase activity by a calcineurin B homologous protein. J Biol Chem. 1999 Dec 17; 274(51):36125-31. PMID: 10593895.
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    50. Ho JM, Beattie BK, Squire JA, Frank DA, Barber DL. Fusion of the ets transcription factor TEL to Jak2 results in constitutive Jak-Stat signaling. Blood. 1999 Jun 15; 93(12):4354-64. PMID: 10361134.
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    51. Tominaga T, Ishizaki T, Narumiya S, Barber DL. p160ROCK mediates RhoA activation of Na-H exchange. EMBO J. 1998 Aug 17; 17(16):4712-22. PMID: 9707430; PMCID: PMC1170800.
    52. Tominaga T, Barber DL. Na-H exchange acts downstream of RhoA to regulate integrin-induced cell adhesion and spreading. Mol Biol Cell. 1998 Aug; 9(8):2287-303. PMID: 9693382; PMCID: PMC25483.
    53. Boussiotis VA, Freeman GJ, Berezovskaya A, Barber DL, Nadler LM. Maintenance of human T cell anergy: blocking of IL-2 gene transcription by activated Rap1. Science. 1997 Oct 3; 278(5335):124-8. PMID: 9311917.
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    54. Barber DL, Corless CN, Xia K, Roberts TM, D'Andrea AD. Erythropoietin activates Raf1 by an Shc-independent pathway in CTLL-EPO-R cells. Blood. 1997 Jan 1; 89(1):55-64. PMID: 8978277.
      View in: PubMed
    55. Lin X, Barber DL. A calcineurin homologous protein inhibits GTPase-stimulated Na-H exchange. Proc Natl Acad Sci U S A. 1996 Oct 29; 93(22):12631-6. PMID: 8901634; PMCID: PMC38044.
    56. Xia K, Mukhopadhyay NK, Inhorn RC, Barber DL, Rose PE, Lee RS, Narsimhan RP, D'Andrea AD, Griffin JD, Roberts TM. The cytokine-activated tyrosine kinase JAK2 activates Raf-1 in a p21ras-dependent manner. Proc Natl Acad Sci U S A. 1996 Oct 15; 93(21):11681-6. PMID: 8876196; PMCID: PMC38118.
    57. Lin X, Voyno-Yasenetskaya TA, Hooley R, Lin CY, Orlowski J, Barber DL. Galpha12 differentially regulates Na+-H+ exchanger isoforms. J Biol Chem. 1996 Sep 13; 271(37):22604-10. PMID: 8798430.
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    58. Vexler ZS, Symons M, Barber DL. Activation of Na+-H+ exchange is necessary for RhoA-induced stress fiber formation. J Biol Chem. 1996 Sep 13; 271(37):22281-4. PMID: 8798382.
      View in: PubMed
    59. Shikama Y, Barber DL, D'Andrea AD, Sieff CA. A constitutively activated chimeric cytokine receptor confers factor-independent growth in hematopoietic cell lines. Blood. 1996 Jul 15; 88(2):455-64. PMID: 8695792.
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    60. Hooley R, Yu CY, Symons M, Barber DL. G alpha 13 stimulates Na+-H+ exchange through distinct Cdc42-dependent and RhoA-dependent pathways. J Biol Chem. 1996 Mar 15; 271(11):6152-8. PMID: 8626403.
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    61. Yamashita T, Barber DL, Zhu Y, Wu N, D'Andrea AD. The Fanconi anemia polypeptide FACC is localized to the cytoplasm. Proc Natl Acad Sci U S A. 1994 Jul 5; 91(14):6712-6. PMID: 7517562; PMCID: PMC44273.
    62. Hou C, Gilbert RL, Barber DL. Subtype-specific signaling mechanisms of somatostatin receptors SSTR1 and SSTR2. J Biol Chem. 1994 Apr 8; 269(14):10357-62. PMID: 8144617.
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    63. Barber DL, DeMartino JC, Showers MO, D'Andrea AD. A dominant negative erythropoietin (EPO) receptor inhibits EPO-dependent growth and blocks F-gp55-dependent transformation. Mol Cell Biol. 1994 Apr; 14(4):2257-65. PMID: 8139531; PMCID: PMC358592.
    64. Voyno-Yasenetskaya T, Conklin BR, Gilbert RL, Hooley R, Bourne HR, Barber DL. G alpha 13 stimulates Na-H exchange. J Biol Chem. 1994 Feb 18; 269(7):4721-4. PMID: 8106440.
      View in: PubMed
    65. Barber D, Ganz MB. Guanine nucleotides regulate beta-adrenergic activation of Na-H exchange independently of receptor coupling to Gs. J Biol Chem. 1992 Oct 15; 267(29):20607-12. PMID: 1328204.
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    66. Barber D, D'Andrea AD. The erythropoietin receptor and the molecular basis of signal transduction. Semin Hematol. 1992 Oct; 29(4):293-304. PMID: 1485183.
      View in: PubMed
    67. Barber D, Ganz MB, Bongiorno PB, Strader CD. Mutant constructs of the beta-adrenergic receptor that are uncoupled from adenylyl cyclase retain functional activation of Na-H exchange. Mol Pharmacol. 1992 Jun; 41(6):1056-60. PMID: 1319545.
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    68. Barber DL, Cacace AM, Raucci DT, Ganz MB. Fatty acids stereospecifically stimulate neurotensin release and increase [Ca2+]i in enteric endocrine cells. Am J Physiol. 1991 Sep; 261(3 Pt 1):G497-503. PMID: 1887896.
      View in: PubMed
    69. Barber D. Mechanisms of receptor-mediated regulation of Na-H exchange. Cell Signal. 1991; 3(5):387-97. PMID: 1662062.
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    70. Ganz MB, Pachter JA, Barber D. Multiple receptors coupled to adenylate cyclase regulate Na-H exchange independent of cAMP. J Biol Chem. 1990 Jun 5; 265(16):8989-92. PMID: 2160951.
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    71. Barber D, McGuire ME, Ganz MB. Beta-adrenergic and somatostatin receptors regulate Na-H exchange independent of cAMP. J Biol Chem. 1989 Dec 15; 264(35):21038-42. PMID: 2574175.
      View in: PubMed
    72. Barber D, Buchan AM, Leeman SE, Soll AH. Canine enteric submucosal cultures: transmitter release from neurotensin-immunoreactive neurons. Neuroscience. 1989; 32(1):245-53. PMID: 2511502.
      View in: PubMed
    73. Barber D, Gregor M, Soll AH. Somatostatin and muscarinic inhibition of canine enteric endocrine cells: cellular mechanisms. Am J Physiol. 1987 Nov; 253(5 Pt 1):G684-9. PMID: 2446508.
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    74. Buchan AM, Barber D, Gregor M, Soll AH. Morphologic and physiologic studies of canine ileal enteroglucagon-containing cells in short-term culture. Gastroenterology. 1987 Oct; 93(4):791-800. PMID: 2887480.
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    75. Dobner PR, Barber DL, Villa-Komaroff L, McKiernan C. Cloning and sequence analysis of cDNA for the canine neurotensin/neuromedin N precursor. Proc Natl Acad Sci U S A. 1987 May; 84(10):3516-20. PMID: 3472221; PMCID: PMC304902.
    76. Buchan AM, Barber D. Neurotensin-containing neurons in the canine enteric innervation. Neurosci Lett. 1987 Apr 23; 76(1):13-7. PMID: 2884606.
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    77. Barber D, Buchan AM, Walsh JH, Soll AH. Regulation of neurotensin release from canine enteric primary cell cultures. Am J Physiol. 1986 Mar; 250(3 Pt 1):G385-90. PMID: 2869696.
      View in: PubMed
    78. Barber DL, Buchan AM, Walsh JH, Soll AH. Isolated canine ileal mucosal cells in short-term culture: a model for study of neurotensin release. Am J Physiol. 1986 Mar; 250(3 Pt 1):G374-84. PMID: 3513618.
      View in: PubMed
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