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David Erle, MD

TitleProfessor
SchoolUCSF School of Medicine
DepartmentMedicine
Address1550 4th Street, Bldg 19B
San Francisco CA 94158
Phone415-514-4370
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    Dr. Erle received an A.B. degree (Biochemistry) from Harvard College in 1980 and an M.D. degree from UCSF in 1984. He was trained in internal medicine and in pulmonary disease at UCSF. As a CVRI research fellow training at the UCSF Lung Biology Center, he studied leukocyte integrins with Robert Pytela and Dean Sheppard. He joined the Lung Biology Center faculty in 1990. His academic activities include laboratory research and clinical teaching. He is the Director of the Functional Genomics Core Facility, UCSF Sandler Center for Basic Research in Asthma. He is a member of the UCSF Program in Immunology and the Cardiovascular Research Institute. He serves as an Attending Physician in the San Francisco General Hospital Medical ICU and the Pulmonary Consultation Service.

    Research Interests:

    Asthma: role of airway epithelial cells. The airway epithelium is increasingly recognized as a key participant in asthma and other major lung diseases. Our group has developed models to understand how IL-13 and other cytokines produced during airway inflammation act on epithelial cells to produce disease. Ongoing work is investigating how specialized molecules in the endoplasmic reticulum contribute to mucus overproduction in asthma and how micro-RNAs affect airway epithelial cell differentiation and function.

    Functional genomics. Powerful genomics tools such as next generation sequencing and microarrays offer new opportunities for understanding lung biology and disease. Members of our group have extensive experience with these technologies. Projects within the lab and collaborative projects with many investigators at UCSF and beyond are using these technologies to investigate pulmonary cell biology, mouse disease models, and samples from humans with asthma and other diseases. We are also pursuing novel genomics approaches, including development of a system for high-throughput analysis of the function of sequences from 3’ untranslated regions of mRNAs.


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    Collapse Research Activities and Funding
    Airway Epithelial Reprogramming in Asthma
    NIH/NHLBI R01HL138424Aug 1, 2017 - Jun 30, 2021
    Role: Principal Investigator
    Empiric deconvolution of functional RNA elements
    NIH/NIGMS R01GM110251Aug 15, 2014 - Mar 31, 2018
    Role: Co-Principal Investigator
    Defining A Comprehensive Reference Profile of Circulating Human Extracellular RNA
    NIH/NHLBI U01HL126493Aug 1, 2014 - Apr 30, 2019
    Role: Co-Principal Investigator
    Massively parallel identification of functional 3' UTR variants in asthma
    NIH/NHLBI R01HL124285Aug 1, 2014 - Jun 30, 2018
    Role: Principal Investigator
    Combined Transcriptomics and Genomics to Find Asthma Genes in Admixed Populations
    NIH R01HL118267Feb 1, 2014 - Jan 31, 2018
    Role: Subcontract PI
    UCSF Career Development Program in Omics of Lung Diseases
    NIH/NHLBI K12HL119997Sep 1, 2013 - May 31, 2018
    Role: Principal Investigator
    Micro-RNAs in airway epithelial differentiation and asthma
    NIH/NHLBI R21HL108596Apr 6, 2011 - Mar 31, 2014
    Role: Principal Investigator
    Specialized molecules with essential roles in mucus production
    NIH/NHLBI R01HL099101Jan 1, 2010 - Dec 31, 2013
    Role: Principal Investigator
    Tools for high-throughput functional analysis of 3'UTR cis-regulatory elements
    NIH/NHGRI R21HG004665May 1, 2008 - Apr 30, 2010
    Role: Principal Investigator
    IL-13 and IL-17 dynamics in the asthmatic airway
    NIH/NIAID U19AI077439Apr 1, 2008 - Mar 31, 2018
    Role: Project leader
    Airway Epithelial Responses to Allergic Inflammation
    NIH/NHLBI R01HL085089Jul 21, 2006 - Jun 30, 2012
    Role: Principal Investigator
    Shared Microarray Facility
    NIH/NHLBI R01HL072301Sep 30, 2002 - Jul 31, 2007
    Role: Principal Investigator
    INTEGRIN ALPHA 4 BETA 7 AND REGULATION OF GUT IMMUNITY
    NIH/NIDDK R01DK054212May 1, 1999 - Apr 30, 2005
    Role: Principal Investigator
    Interactions of Lymphocytes, Cytokines and Airway Cells
    NIH/NHLBI P50HL056385Sep 30, 1996 - Aug 31, 2006
    Role: Co-Investigator
    MECHANISMS OF PERSISTENT AIRWAY INFLAMMATION IN ASTHMA
    NIH/NHLBI P01HL056385Sep 30, 1996 - Aug 31, 2001
    Role: Co-Investigator
    CHEMOKINES AS REGULATORS OF LEUKOCYTE INTEGRIN ACTIVITY
    NIH/NHLBI R01HL050024Feb 16, 1994 - Nov 30, 2004
    Role: Principal Investigator
    MULTIPURPOSE ARTHRITIS AND MUSCULOSKELETAL DISEASES CTR
    NIH/NIAMS P60AR020684Sep 15, 1977 - Dec 31, 2003
    Role: Co-Investigator
    Multidisciplinary Training Program in Lung Disease
    NIH/NHLBI T32HL007185Jul 1, 1976 - Jun 30, 2022
    Role: Co-Principal Investigator

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    Collapse Global Health
    Collapse Featured Publications

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Bhakta NR, Christenson SA, Nerella S, Solberg OD, Nguyen CP, Choy DF, Jung KL, Garudadri S, Bonser LR, Pollack JL, Zlock LT, Erle D, Langelier C, Derisi JL, Arron JR, Fahy JV, Woodruff PG. Interferon-stimulated Gene Expression, Type-2 Inflammation and Endoplasmic Reticulum Stress in Asthma. Am J Respir Crit Care Med. 2017 Oct 24. PMID: 29064281.
      View in: PubMed
    2. Naz S, Kolmert J, Yang M, Reinke SN, Kamleh MA, Snowden S, Heyder T, Levänen B, Erle D, Sköld CM, Wheelock ÅM, Wheelock CE. Metabolomics analysis identifies sex-associated metabotypes of oxidative stress and the autotaxin-lysoPA axis in COPD. Eur Respir J. 2017 Jun; 49(6). PMID: 28642310.
      View in: PubMed
    3. Myers DR, Lau T, Markegard E, Lim HW, Kasler H, Zhu M, Barczak A, Huizar JP, Zikherman J, Erle D, Zhang W, Verdin E, Roose JP. Tonic LAT-HDAC7 Signals Sustain Nur77 and Irf4 Expression to Tune Naive CD4 T Cells. Cell Rep. 2017 May 23; 19(8):1558-1571. PMID: 28538176.
      View in: PubMed
    4. Van Dyken SJ, Liang HE, Naikawadi RP, Woodruff PG, Wolters PJ, Erle D, Locksley RM. Spontaneous Chitin Accumulation in Airways and Age-Related Fibrotic Lung Disease. Cell. 2017 Apr 20; 169(3):497-509.e13. PMID: 28431248.
      View in: PubMed
    5. Yi L, Cheng D, Zhang K, Huo X, Mo Y, Shi H, Di H, Zou Y, Zhang H, Zhao J, Xu Y, Erle D, Zhen G. Intelectin contributes to allergen-induced IL-25, IL-33, and TSLP expression and type 2 response in asthma and atopic dermatitis. Mucosal Immunol. 2017 Feb 22. PMID: 28224996.
      View in: PubMed
    6. Van Dyken SJ, Nussbaum JC, Lee J, Molofsky AB, Liang HE, Pollack JL, Gate RE, Haliburton GE, Ye CJ, Marson A, Erle D, Locksley RM. A tissue checkpoint regulates type 2 immunity. Nat Immunol. 2016 Dec; 17(12):1381-1387. PMID: 27749840.
      View in: PubMed
    7. Khosravi AR, Erle D. Chitin-Induced Airway Epithelial Cell Innate Immune Responses Are Inhibited by Carvacrol/Thymol. PLoS One. 2016; 11(7):e0159459. PMID: 27463381; PMCID: PMC4962986.
    8. Disayabutr S, Kim EK, Cha SI, Green G, Naikawadi RP, Jones KD, Golden JA, Schroeder A, Matthay MA, Kukreja J, Erle D, Collard HR, Wolters PJ. miR-34 miRNAs Regulate Cellular Senescence in Type II Alveolar Epithelial Cells of Patients with Idiopathic Pulmonary Fibrosis. PLoS One. 2016; 11(6):e0158367. PMID: 27362652; PMCID: PMC4928999.
    9. Bonser LR, Zlock L, Finkbeiner W, Erle D. Epithelial tethering of MUC5AC-rich mucus impairs mucociliary transport in asthma. J Clin Invest. 2016 Jun 01; 126(6):2367-71. PMID: 27183390; PMCID: PMC4887179.
    10. Balgoma D, Yang M, Sjödin M, Snowden S, Karimi R, Levänen B, Merikallio H, Kaarteenaho R, Palmberg L, Larsson K, Erle D, Dahlén SE, Dahlén B, Sköld CM, Wheelock ÅM, Wheelock CE. Linoleic acid-derived lipid mediators increase in a female-dominated subphenotype of COPD. Eur Respir J. 2016 Jun; 47(6):1645-56. PMID: 26965288.
      View in: PubMed
    11. Biton A, Torgerson D, Letonqueze O, Zhao W, Zaitlen N, Erle D. Massively Parallel Identification of Regulatory Variants in Asthma. Ann Am Thorac Soc. 2016 Mar; 13 Suppl 1:S104. PMID: 27027944; PMCID: PMC5015739 [Available on 03/01/17].
    12. Pua HH, Steiner DF, Patel S, Gonzalez JR, Ortiz-Carpena JF, Kageyama R, Chiou NT, Gallman A, de Kouchkovsky D, Jeker LT, McManus MT, Erle D, Ansel KM. MicroRNAs 24 and 27 Suppress Allergic Inflammation and Target a Network of Regulators of T Helper 2 Cell-Associated Cytokine Production. Immunity. 2016 Apr 19; 44(4):821-32. PMID: 26850657; PMCID: PMC4838571 [Available on 04/19/17].
    13. Bonser LR, Schroeder BW, Ostrin LA, Baumlin N, Olson JL, Salathe M, Erle D. The Endoplasmic Reticulum Resident Protein AGR3. Required for Regulation of Ciliary Beat Frequency in the Airway. Am J Respir Cell Mol Biol. 2015 Oct; 53(4):536-43. PMID: 25751668; PMCID: PMC4742895 [Available on 10/01/16].
    14. Khan IS, Park CY, Mavropoulos A, Shariat N, Pollack JL, Barczak AJ, Erle D, McManus MT, Anderson MS, Jeker LT. Identification of MiR-205 As a MicroRNA That Is Highly Expressed in Medullary Thymic Epithelial Cells. PLoS One. 2015; 10(8):e0135440. PMID: 26270036; PMCID: PMC4535774.
    15. Kangelaris KN, Prakash A, Liu KD, Aouizerat B, Woodruff PG, Erle D, Rogers A, Seeley EJ, Chu J, Liu T, Osterberg-Deiss T, Zhuo H, Matthay MA, Calfee CS. Increased expression of neutrophil-related genes in patients with early sepsis-induced ARDS. Am J Physiol Lung Cell Mol Physiol. 2015 Jun 01; 308(11):L1102-13. PMID: 25795726; PMCID: PMC4451399.
    16. Broz ML, Binnewies M, Boldajipour B, Nelson AE, Pollack JL, Erle D, Barczak A, Rosenblum MD, Daud A, Barber DL, Amigorena S, Van't Veer LJ, Sperling AI, Wolf DM, Krummel MF. Dissecting the Tumor Myeloid Compartment Reveals Rare Activating Antigen-Presenting Cells Critical for T Cell Immunity. Cancer Cell. 2014 Dec 08; 26(6):938. PMID: 28898680.
      View in: PubMed
    17. Broz ML, Binnewies M, Boldajipour B, Nelson AE, Pollack JL, Erle D, Barczak A, Rosenblum MD, Daud A, Barber DL, Amigorena S, Van't Veer LJ, Sperling AI, Wolf DM, Krummel MF. Dissecting the tumor myeloid compartment reveals rare activating antigen-presenting cells critical for T cell immunity. Cancer Cell. 2014 Nov 10; 26(5):638-52. PMID: 25446897; PMCID: PMC4254577.
    18. Cheng D, Xue Z, Yi L, Shi H, Zhang K, Huo X, Bonser LR, Zhao J, Xu Y, Erle D, Zhen G. Epithelial interleukin-25 is a key mediator in Th2-high, corticosteroid-responsive asthma. Am J Respir Crit Care Med. 2014 Sep 15; 190(6):639-48. PMID: 25133876; PMCID: PMC4214109.
    19. Bhakta NR, Erle D. IL-17 and "TH2-high" asthma: Adding fuel to the fire? J Allergy Clin Immunol. 2014 Nov; 134(5):1187-8. PMID: 25174869.
      View in: PubMed
    20. Minagawa S, Lou J, Seed RI, Cormier A, Wu S, Cheng Y, Murray L, Tsui P, Connor J, Herbst R, Govaerts C, Barker T, Cambier S, Yanagisawa H, Goodsell A, Hashimoto M, Brand OJ, Cheng R, Ma R, McKnelly KJ, Wen W, Hill A, Jablons D, Wolters P, Kitamura H, Araya J, Barczak AJ, Erle D, Reichardt LF, Marks JD, Baron JL, Nishimura SL. Selective targeting of TGF-ß activation to treat fibroinflammatory airway disease. Sci Transl Med. 2014 Jun 18; 6(241):241ra79. PMID: 24944194; PMCID: PMC4341974.
    21. Erle D, Sheppard D. The cell biology of asthma. J Cell Biol. 2014 Jun 09; 205(5):621-31. PMID: 24914235; PMCID: PMC4050726.
    22. Zhao W, Pollack JL, Blagev DP, Zaitlen N, McManus MT, Erle D. Massively parallel functional annotation of 3' untranslated regions. Nat Biotechnol. 2014 Apr; 32(4):387-91. PMID: 24633241; PMCID: PMC3981918.
    23. Waterfield M, Khan IS, Cortez JT, Fan U, Metzger T, Greer A, Fasano K, Martinez-Llordella M, Pollack JL, Erle D, Su M, Anderson MS. The transcriptional regulator Aire coopts the repressive ATF7ip-MBD1 complex for the induction of immunotolerance. Nat Immunol. 2014 Mar; 15(3):258-65. PMID: 24464130; PMCID: PMC4172453.
    24. McErlean P, Berdnikovs S, Favoreto S, Shen J, Biyasheva A, Barbeau R, Eisley C, Barczak A, Ward T, Schleimer RP, Erle D, Boushey HA, Avila PC. Asthmatics with exacerbation during acute respiratory illness exhibit unique transcriptional signatures within the nasal mucosa. Genome Med. 2014; 6(1):1. PMID: 24433494; PMCID: PMC3971347.
    25. Reisdorph N, Stearman R, Kechris K, Phang TL, Reisdorph R, Prenni J, Erle D, Coldren C, Schey K, Nesvizhskii A, Geraci M. Hands-on workshops as an effective means of learning advanced technologies including genomics, proteomics and bioinformatics. Genomics Proteomics Bioinformatics. 2013 Dec; 11(6):368-77. PMID: 24316330; PMCID: PMC4049090.
    26. Publicover J, Gaggar A, Nishimura S, Van Horn CM, Goodsell A, Muench MO, Reinhardt RL, van Rooijen N, Wakil AE, Peters M, Cyster JG, Erle D, Rosenthal P, Cooper S, Baron JL. Age-dependent hepatic lymphoid organization directs successful immunity to hepatitis B. J Clin Invest. 2013 Sep; 123(9):3728-39. PMID: 23925290; PMCID: PMC3754256.
    27. Park SW, Lee EH, Lee EJ, Kim HJ, Bae DJ, Han S, Kim D, Jang AS, Uh ST, Kim YH, Erle D, Park CS. Apolipoprotein A1 potentiates lipoxin A4 synthesis and recovery of allergen-induced disrupted tight junctions in the airway epithelium. Clin Exp Allergy. 2013 Aug; 43(8):914-27. PMID: 23889245.
      View in: PubMed
    28. Rahmutula D, Marcus GM, Wilson EE, Ding CH, Xiao Y, Paquet AC, Barbeau R, Barczak AJ, Erle D, Olgin JE. Molecular basis of selective atrial fibrosis due to overexpression of transforming growth factor-ß1. Cardiovasc Res. 2013 Sep 01; 99(4):769-79. PMID: 23612580; PMCID: PMC3746950.
    29. Bronevetsky Y, Villarino AV, Eisley CJ, Barbeau R, Barczak AJ, Heinz GA, Kremmer E, Heissmeyer V, McManus MT, Erle D, Rao A, Ansel KM. T cell activation induces proteasomal degradation of Argonaute and rapid remodeling of the microRNA repertoire. J Exp Med. 2013 Feb 11; 210(2):417-32. PMID: 23382546; PMCID: PMC3570096.
    30. Levänen B, Bhakta NR, Torregrosa Paredes P, Barbeau R, Hiltbrunner S, Pollack JL, Sköld CM, Svartengren M, Grunewald J, Gabrielsson S, Eklund A, Larsson BM, Woodruff PG, Erle D, Wheelock ÅM. Altered microRNA profiles in bronchoalveolar lavage fluid exosomes in asthmatic patients. J Allergy Clin Immunol. 2013 Mar; 131(3):894-903. PMID: 23333113; PMCID: PMC4013392.
    31. Seumois G, Vijayanand P, Eisley CJ, Omran N, Kalinke L, North M, Ganesan AP, Simpson LJ, Hunkapiller N, Moltzahn F, Woodruff PG, Fahy JV, Erle D, Djukanovic R, Blelloch R, Ansel KM. An integrated nano-scale approach to profile miRNAs in limited clinical samples. Am J Clin Exp Immunol. 2012 Nov 30; 1(2):70-89. PMID: 23304658.
      View in: PubMed
    32. Solberg OD, Ostrin EJ, Love MI, Peng JC, Bhakta NR, Hou L, Nguyen C, Solon M, Nguyen C, Barczak AJ, Zlock LT, Blagev DP, Finkbeiner WE, Ansel KM, Arron JR, Erle D, Woodruff PG. Airway epithelial miRNA expression is altered in asthma. Am J Respir Crit Care Med. 2012 Nov 15; 186(10):965-74. PMID: 22955319; PMCID: PMC3530212.
    33. Diez D, Goto S, Fahy JV, Erle D, Woodruff PG, Wheelock ÅM, Wheelock CE. Network analysis identifies a putative role for the PPAR and type 1 interferon pathways in glucocorticoid actions in asthmatics. BMC Med Genomics. 2012 Jun 19; 5:27. PMID: 22713245; PMCID: PMC3408345.
    34. Schroeder BW, Verhaeghe C, Park SW, Nguyenvu LT, Huang X, Zhen G, Erle D. AGR2 is induced in asthma and promotes allergen-induced mucin overproduction. Am J Respir Cell Mol Biol. 2012 Aug; 47(2):178-85. PMID: 22403803; PMCID: PMC3423459.
    35. Sugimoto K, Kudo M, Sundaram A, Ren X, Huang K, Bernstein X, Wang Y, Raymond WW, Erle D, Abrink M, Caughey GH, Huang X, Sheppard D. The avß6 integrin modulates airway hyperresponsiveness in mice by regulating intraepithelial mast cells. J Clin Invest. 2012 Feb; 122(2):748-58. PMID: 22232213; PMCID: PMC3266785.
    36. Wang BT, Ducker GS, Barczak AJ, Barbeau R, Erle D, Shokat KM. The mammalian target of rapamycin regulates cholesterol biosynthetic gene expression and exhibits a rapamycin-resistant transcriptional profile. Proc Natl Acad Sci U S A. 2011 Sep 13; 108(37):15201-6. PMID: 21876130; PMCID: PMC3174577.
    37. Zhao W, Blagev D, Pollack JL, Erle D. Toward a systematic understanding of mRNA 3' untranslated regions. Proc Am Thorac Soc. 2011 May; 8(2):163-6. PMID: 21543795; PMCID: PMC3131834.
    38. Ritner C, Wong SS, King FW, Mihardja SS, Liszewski W, Erle D, Lee RJ, Bernstein HS. An engineered cardiac reporter cell line identifies human embryonic stem cell-derived myocardial precursors. PLoS One. 2011 Jan 04; 6(1):e16004. PMID: 21245908; PMCID: PMC3014940.
    39. Kirstein F, Horsnell WG, Kuperman DA, Huang X, Erle D, Lopata AL, Brombacher F. Expression of IL-4 receptor alpha on smooth muscle cells is not necessary for development of experimental allergic asthma. J Allergy Clin Immunol. 2010 Aug; 126(2):347-54. PMID: 20579713; PMCID: PMC2917502.
    40. Price AE, Liang HE, Sullivan BM, Reinhardt RL, Eisley CJ, Erle D, Locksley RM. Systemically dispersed innate IL-13-expressing cells in type 2 immunity. Proc Natl Acad Sci U S A. 2010 Jun 22; 107(25):11489-94. PMID: 20534524; PMCID: PMC2895098.
    41. Gu N, Kang G, Jin C, Xu Y, Zhang Z, Erle D, Zhen G. Intelectin is required for IL-13-induced monocyte chemotactic protein-1 and -3 expression in lung epithelial cells and promotes allergic airway inflammation. Am J Physiol Lung Cell Mol Physiol. 2010 Mar; 298(3):L290-6. PMID: 19965981; PMCID: PMC2838671.
    42. Kim JK, Klinger M, Benjamin J, Xiao Y, Erle D, Littman DR, Killeen N. Impact of the TCR signal on regulatory T cell homeostasis, function, and trafficking. PLoS One. 2009 Aug 11; 4(8):e6580. PMID: 19668367; PMCID: PMC2719063.
    43. Park SW, Verhaeghe C, Nguyenvu LT, Barbeau R, Eisley CJ, Nakagami Y, Huang X, Woodruff PG, Fahy JV, Erle D. Distinct roles of FOXA2 and FOXA3 in allergic airway disease and asthma. Am J Respir Crit Care Med. 2009 Oct 01; 180(7):603-10. PMID: 19628779; PMCID: PMC2753788.
    44. Klinger M, Kim JK, Chmura SA, Barczak A, Erle D, Killeen N. Thymic OX40 expression discriminates cells undergoing strong responses to selection ligands. J Immunol. 2009 Apr 15; 182(8):4581-9. PMID: 19342632; PMCID: PMC2736618.
    45. Park SW, Zhen G, Verhaeghe C, Nakagami Y, Nguyenvu LT, Barczak AJ, Killeen N, Erle D. The protein disulfide isomerase AGR2 is essential for production of intestinal mucus. Proc Natl Acad Sci U S A. 2009 Apr 28; 106(17):6950-5. PMID: 19359471; PMCID: PMC2678445.
    46. Medoff BD, Seung E, Hong S, Thomas SY, Sandall BP, Duffield JS, Kuperman DA, Erle D, Luster AD. CD11b+ myeloid cells are the key mediators of Th2 cell homing into the airway in allergic inflammation. J Immunol. 2009 Jan 01; 182(1):623-35. PMID: 19109196; PMCID: PMC2718444.
    47. Nakagami Y, Favoreto S, Zhen G, Park SW, Nguyenvu LT, Kuperman DA, Dolganov GM, Huang X, Boushey HA, Avila PC, Erle D. The epithelial anion transporter pendrin is induced by allergy and rhinovirus infection, regulates airway surface liquid, and increases airway reactivity and inflammation in an asthma model. J Immunol. 2008 Aug 01; 181(3):2203-10. PMID: 18641360; PMCID: PMC2491716.
    48. Lewis CC, Yang JY, Huang X, Banerjee SK, Blackburn MR, Baluk P, McDonald DM, Blackwell TS, Nagabhushanam V, Peters W, Voehringer D, Erle D. Disease-specific gene expression profiling in multiple models of lung disease. Am J Respir Crit Care Med. 2008 Feb 15; 177(4):376-87. PMID: 18029791; PMCID: PMC2258439.
    49. Araya J, Cambier S, Markovics JA, Wolters P, Jablons D, Hill A, Finkbeiner W, Jones K, Broaddus VC, Sheppard D, Barzcak A, Xiao Y, Erle D, Nishimura SL. Squamous metaplasia amplifies pathologic epithelial-mesenchymal interactions in COPD patients. J Clin Invest. 2007 Nov; 117(11):3551-62. PMID: 17965775; PMCID: PMC2040320.
    50. Woodruff PG, Boushey HA, Dolganov GM, Barker CS, Yang YH, Donnelly S, Ellwanger A, Sidhu SS, Dao-Pick TP, Pantoja C, Erle D, Yamamoto KR, Fahy JV. Genome-wide profiling identifies epithelial cell genes associated with asthma and with treatment response to corticosteroids. Proc Natl Acad Sci U S A. 2007 Oct 02; 104(40):15858-63. PMID: 17898169; PMCID: PMC2000427.
    51. Koth LL, Alex B, Hawgood S, Nead MA, Sheppard D, Erle D, Morris DG. Integrin beta6 mediates phospholipid and collectin homeostasis by activation of latent TGF-beta1. Am J Respir Cell Mol Biol. 2007 Dec; 37(6):651-9. PMID: 17641300; PMCID: PMC2219547.
    52. Frank JA, Erle D. Progress toward a systems biology approach to acute lung injury. Am J Physiol Lung Cell Mol Physiol. 2007 Aug; 293(2):L290-1. PMID: 17575007.
      View in: PubMed
    53. Raj JU, Aliferis C, Caprioli RM, Cowley AW, Davies PF, Duncan MW, Erle D, Erzurum SC, Finn PW, Ischiropoulos H, Kaminski N, Kleeberger SR, Leikauf GD, Loyd JE, Martin TR, Matalon S, Moore JH, Quackenbush J, Sabo-Attwood T, Shapiro SD, Schnitzer JE, Schwartz DA, Schwiebert LM, Sheppard D, Ware LB, Weiss ST, Whitsett JA, Wurfel MM, Matthay MA. Genomics and proteomics of lung disease: conference summary. Am J Physiol Lung Cell Mol Physiol. 2007 Jul; 293(1):L45-51. PMID: 17468134; PMCID: PMC4212816.
    54. Chang WL, Coro ES, Rau FC, Xiao Y, Erle D, Baumgarth N. Influenza virus infection causes global respiratory tract B cell response modulation via innate immune signals. J Immunol. 2007 Feb 01; 178(3):1457-67. PMID: 17237394.
      View in: PubMed
    55. Horsnell WG, Cutler AJ, Hoving JC, Hoving CJ, Mearns H, Myburgh E, Arendse B, Finkelman FD, Owens GK, Erle D, Brombacher F. Delayed goblet cell hyperplasia, acetylcholine receptor expression, and worm expulsion in SMC-specific IL-4Ralpha-deficient mice. PLoS Pathog. 2007 Jan; 3(1):e1. PMID: 17222057; PMCID: PMC1769405.
    56. Zhen G, Park SW, Nguyenvu LT, Rodriguez MW, Barbeau R, Paquet AC, Erle D. IL-13 and epidermal growth factor receptor have critical but distinct roles in epithelial cell mucin production. Am J Respir Cell Mol Biol. 2007 Feb; 36(2):244-53. PMID: 16980555; PMCID: PMC1899314.
    57. Erle D, Zhen G. The asthma channel? Stay tuned . . . Am J Respir Crit Care Med. 2006 Jun 01; 173(11):1181-2. PMID: 16738260.
      View in: PubMed
    58. Woodruff PG, Koth LL, Yang YH, Rodriguez MW, Favoreto S, Dolganov GM, Paquet AC, Erle D. A distinctive alveolar macrophage activation state induced by cigarette smoking. Am J Respir Crit Care Med. 2005 Dec 01; 172(11):1383-92. PMID: 16166618; PMCID: PMC2718436.
    59. Kuperman DA, Huang X, Nguyenvu L, Hölscher C, Brombacher F, Erle D. IL-4 receptor signaling in Clara cells is required for allergen-induced mucus production. J Immunol. 2005 Sep 15; 175(6):3746-52. PMID: 16148120.
      View in: PubMed
    60. Kuperman DA, Lewis CC, Woodruff PG, Rodriguez MW, Yang YH, Dolganov GM, Fahy JV, Erle D. Dissecting asthma using focused transgenic modeling and functional genomics. J Allergy Clin Immunol. 2005 Aug; 116(2):305-11. PMID: 16083784.
      View in: PubMed
    61. Barker CS, Griffin C, Dolganov GM, Hanspers K, Yang JY, Erle D. Increased DNA microarray hybridization specificity using sscDNA targets. BMC Genomics. 2005 Apr 22; 6:57. PMID: 15847692; PMCID: PMC1090574.
    62. Wolters PJ, Mallen-St Clair J, Lewis CC, Villalta SA, Baluk P, Erle D, Caughey GH. Tissue-selective mast cell reconstitution and differential lung gene expression in mast cell-deficient Kit(W-sh)/Kit(W-sh) sash mice. Clin Exp Allergy. 2005 Jan; 35(1):82-8. PMID: 15649271; PMCID: PMC2271075.
    63. Koth LL, Rodriguez MW, Bernstein XL, Chan S, Huang X, Charo IF, Rollins BJ, Erle D. Aspergillus antigen induces robust Th2 cytokine production, inflammation, airway hyperreactivity and fibrosis in the absence of MCP-1 or CCR2. Respir Res. 2004 Sep 15; 5:12. PMID: 15377395; PMCID: PMC520828.
    64. Rodriguez MW, Paquet AC, Yang YH, Erle D. Differential gene expression by integrin beta 7+ and beta 7- memory T helper cells. BMC Immunol. 2004 Jul 05; 5:13. PMID: 15236665; PMCID: PMC476736.
    65. Erle D, Yang YH. Asthma investigators begin to reap the fruits of genomics. Genome Biol. 2003; 4(11):232. PMID: 14611649; PMCID: PMC329104.
    66. Banerjee SK, Young HW, Barczak A, Erle D, Blackburn MR. Abnormal alveolar development associated with elevated adenine nucleosides. Am J Respir Cell Mol Biol. 2004 Jan; 30(1):38-50. PMID: 12855405.
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    67. Barczak A, Rodriguez MW, Hanspers K, Koth LL, Tai YC, Bolstad BM, Speed TP, Erle D. Spotted long oligonucleotide arrays for human gene expression analysis. Genome Res. 2003 Jul; 13(7):1775-85. PMID: 12805270; PMCID: PMC403751.
    68. Kuperman DA, Huang X, Koth LL, Chang GH, Dolganov GM, Zhu Z, Elias JA, Sheppard D, Erle D. Direct effects of interleukin-13 on epithelial cells cause airway hyperreactivity and mucus overproduction in asthma. Nat Med. 2002 Aug; 8(8):885-9. PMID: 12091879.
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    69. Shu F, Holzmann B, Seibold F, Erle D, Kearney JF. Activated alpha4 integrins are preferentially expressed on immature thymocytes and activated T cells. Dev Immunol. 2002 Jun; 9(2):73-84. PMID: 12739784; PMCID: PMC2276093.
    70. Erle D, Koth L, Abramson O, Rodriguez MW, Barczak A. Use of spotted oligonucleotide arrays for large-scale analysis of mammalian gene expression. Chest. 2002 Mar; 121(3 Suppl):80S. PMID: 11893700.
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    71. Venkayya R, Lam M, Willkom M, Grünig G, Corry DB, Erle D. The Th2 lymphocyte products IL-4 and IL-13 rapidly induce airway hyperresponsiveness through direct effects on resident airway cells. Am J Respir Cell Mol Biol. 2002 Feb; 26(2):202-8. PMID: 11804871.
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    72. Lee JH, Kaminski N, Dolganov G, Grunig G, Koth L, Solomon C, Erle D, Sheppard D. Interleukin-13 induces dramatically different transcriptional programs in three human airway cell types. Am J Respir Cell Mol Biol. 2001 Oct; 25(4):474-85. PMID: 11694453.
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    73. Abramson O, Qiu S, Erle D. Preferential production of interferon-gamma by CD4+ T cells expressing the homing receptor integrin alpha4/beta7. Immunology. 2001 Jun; 103(2):155-63. PMID: 11412302; PMCID: PMC1783237.
    74. Solomon C, Christian DL, Chen LL, Welch BS, Kleinman MT, Dunham E, Erle D, Balmes JR. Effect of serial-day exposure to nitrogen dioxide on airway and blood leukocytes and lymphocyte subsets. Eur Respir J. 2000 May; 15(5):922-8. PMID: 10853860.
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    75. Robinson BW, Erle D, Jones DA, Shapiro S, Metzger WJ, Albelda SM, Parks WC, Boylan A. Recent advances in molecular biological techniques and their relevance to pulmonary research. Thorax. 2000 Apr; 55(4):329-39. PMID: 10722774; PMCID: PMC1745722.
    76. Erle D, Pabst R. Intraepithelial lymphocytes in the lung: a neglected lymphocyte population. Am J Respir Cell Mol Biol. 2000 Apr; 22(4):398-400. PMID: 10745019.
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    77. Pachynski RK, Wu SW, Gunn MD, Erle D. Secondary lymphoid-tissue chemokine (SLC) stimulates integrin alpha 4 beta 7-mediated adhesion of lymphocytes to mucosal addressin cell adhesion molecule-1 (MAdCAM-1) under flow. J Immunol. 1998 Jul 15; 161(2):952-6. PMID: 9670974.
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    78. Pfaff M, Liu S, Erle D, Ginsberg MH. Integrin beta cytoplasmic domains differentially bind to cytoskeletal proteins. J Biol Chem. 1998 Mar 13; 273(11):6104-9. PMID: 9497328.
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    79. Abitorabi MA, Pachynski RK, Ferrando RE, Tidswell M, Erle D. Presentation of integrins on leukocyte microvilli: a role for the extracellular domain in determining membrane localization. J Cell Biol. 1997 Oct 20; 139(2):563-71. PMID: 9334357; PMCID: PMC2139798.
    80. Tidswell M, Pachynski R, Wu SW, Qiu SQ, Dunham E, Cochran N, Briskin MJ, Kilshaw PJ, Lazarovits AI, Andrew DP, Butcher EC, Yednock TA, Erle D. Structure-function analysis of the integrin beta 7 subunit: identification of domains involved in adhesion to MAdCAM-1. J Immunol. 1997 Aug 01; 159(3):1497-505. PMID: 9233649.
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    81. Abitorabi MA, Mackay CR, Jerome EH, Osorio O, Butcher EC, Erle D. Differential expression of homing molecules on recirculating lymphocytes from sheep gut, peripheral, and lung lymph. J Immunol. 1996 May 01; 156(9):3111-7. PMID: 8617931.
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    82. Huang XZ, Wu JF, Cass D, Erle D, Corry D, Young SG, Farese RV, Sheppard D. Inactivation of the integrin beta 6 subunit gene reveals a role of epithelial integrins in regulating inflammation in the lung and skin. J Cell Biol. 1996 May; 133(4):921-8. PMID: 8666675; PMCID: PMC2120829.
    83. Corry DB, Folkesson HG, Warnock ML, Erle D, Matthay MA, Wiener-Kronish JP, Locksley RM. Interleukin 4, but not interleukin 5 or eosinophils, is required in a murine model of acute airway hyperreactivity. J Exp Med. 1996 Jan 01; 183(1):109-17. PMID: 8551213; PMCID: PMC2192426.
    84. Erle D. Intraepithelial lymphocytes. Scratching the surface. Curr Biol. 1995 Mar 01; 5(3):252-4. PMID: 7780732.
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    85. Erle D, Briskin MJ, Butcher EC, Garcia-Pardo A, Lazarovits AI, Tidswell M. Expression and function of the MAdCAM-1 receptor, integrin alpha 4 beta 7, on human leukocytes. J Immunol. 1994 Jul 15; 153(2):517-28. PMID: 7517418.
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    86. Erle D, Brown T, Christian D, Aris R. Lung epithelial lining fluid T cell subsets defined by distinct patterns of beta 7 and beta 1 integrin expression. Am J Respir Cell Mol Biol. 1994 Mar; 10(3):237-44. PMID: 7509610.
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    87. Pytela R, Suzuki S, Breuss J, Erle D, Sheppard D. Polymerase chain reaction cloning with degenerate primers: homology-based identification of adhesion molecules. Methods Enzymol. 1994; 245:420-51. PMID: 7760745.
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    88. Schweighoffer T, Tanaka Y, Tidswell M, Erle D, Horgan KJ, Luce GE, Lazarovits AI, Buck D, Shaw S. Selective expression of integrin alpha 4 beta 7 on a subset of human CD4+ memory T cells with Hallmarks of gut-trophism. J Immunol. 1993 Jul 15; 151(2):717-29. PMID: 7687621.
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    89. Rüegg C, Pytela R, Erle D. Characterization of the leukocyte integrin subunit beta 7. Chest. 1993 Feb; 103(2 Suppl):86S. PMID: 8428547.
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    90. Erle D, Pytela R. How do integrins integrate? The role of cell adhesion receptors in differentiation and development. Am J Respir Cell Mol Biol. 1992 May; 6(5):459-60. PMID: 1581071.
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    91. Rüegg C, Postigo AA, Sikorski EE, Butcher EC, Pytela R, Erle D. Role of integrin alpha 4 beta 7/alpha 4 beta P in lymphocyte adherence to fibronectin and VCAM-1 and in homotypic cell clustering. J Cell Biol. 1992 Apr; 117(1):179-89. PMID: 1372909; PMCID: PMC2289398.
    92. Sheppard D, Erle D, Busk M, Pytela R. Identification of novel airway epithelial integrins using the homology-based polymerase chain reaction. Chest. 1992 Mar; 101(3 Suppl):49S. PMID: 1541204.
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    93. Erle D, Sheppard D, Breuss J, Rüegg C, Pytela R. Novel integrin alpha and beta subunit cDNAs identified in airway epithelial cells and lung leukocytes using the polymerase chain reaction. Am J Respir Cell Mol Biol. 1991 Aug; 5(2):170-7. PMID: 1892648.
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    94. Erle D, Rüegg C, Sheppard D, Pytela R. Complete amino acid sequence of an integrin beta subunit (beta 7) identified in leukocytes. J Biol Chem. 1991 Jun 15; 266(17):11009-16. PMID: 2040616.
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    95. Sheppard D, Rozzo C, Starr L, Quaranta V, Erle D, Pytela R. Complete amino acid sequence of a novel integrin beta subunit (beta 6) identified in epithelial cells using the polymerase chain reaction. J Biol Chem. 1990 Jul 15; 265(20):11502-7. PMID: 2365683.
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    96. Bethel RA, Erle D, Epstein J, Sheppard D, Nadel JA, Boushey HA. Effect of exercise rate and route of inhalation on sulfur-dioxide-induced bronchoconstriction in asthmatic subjects. Am Rev Respir Dis. 1983 Oct; 128(4):592-6. PMID: 6354021.
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