Tomiko Oskotsky, MD

Title(s)Bioinformatics Programmer, Computational Health Scienc
SchoolSchool of Medicine
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ORCID ORCID Icon0000-0001-7393-5120 Additional info
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients. PLoS Comput Biol. 2023 May; 19(5):e1011050. Sperry MM, Oskotsky TT, Maric I, Kaushal S, Takeda T, Horvath V, Powers RK, Rodas M, Furlong B, Soong M, Prabhala P, Goyal G, Carlson KE, Wong RJ, Kosti I, Le BL, Logue J, Hammond H, Frieman M, Stevenson DK, Ingber DE, Sirota M, Novak R. PMID: 37146076; PMCID: PMC10191356.
      View in: PubMed   Mentions:
    2. Similarities and differences in Alzheimer's dementia comorbidities in racialized populations identified from electronic medical records. Commun Med (Lond). 2023 Apr 08; 3(1):50. Woldemariam SR, Tang AS, Oskotsky TT, Yaffe K, Sirota M. PMID: 37031271; PMCID: PMC10082816.
      View in: PubMed   Mentions:
    3. VMAP: Vaginal Microbiome Atlas During Pregnancy. medRxiv. 2023 Apr 05. Leo AP, Oskotsky TT, Oskotsky B, Wibrand C, Roldan A, Tang A, Ha CWY, Wong RJ, Minot SS, Andreoletti G, Kosti I, Theis KR, Ng S, Lee YS, Diaz-Gimeno P, Bennett PR, MacIntyre DA, Lynch SV, Romero R, Tarca AL, Stevenson DK, Aghaeepour N, Golob J, Sirota M. PMID: 36993193; PMCID: PMC10055588.
      View in: PubMed   Mentions:
    4. Leveraging electronic health records to identify risk factors for recurrent pregnancy loss across two medical centers: a case-control study. Res Sq. 2023 Mar 31. Roger J, Xie F, Costello J, Tang A, Liu J, Oskotsky T, Woldemariam S, Kosti I, Le B, Snyder M, Giudice L, Torgerson D, Shaw G, Stevenson D, Rajkovic A, Aghaeepour N, Glymour M, Cakmak H, Lathi R, Sirota M. PMID: 36993325; PMCID: PMC10055527.
      View in: PubMed   Mentions:
    5. Microbiome Preterm Birth DREAM Challenge: Crowdsourcing Machine Learning Approaches to Advance Preterm Birth Research. medRxiv. 2023 Mar 09. Golob JL, Oskotsky TT, Tang AS, Roldan A, Chung V, Ha CWY, Wong RJ, Flynn KJ, Parraga-Leo A, Wibrand C, Minot SS, Andreoletti G, Kosti I, Bletz J, Nelson A, Gao J, Wei Z, Chen G, Tang ZZ, Novielli P, Romano D, Pantaleo E, Amoroso N, Monaco A, Vacca M, Angelis M, Bellotti R, Tangaro S, Kuntzleman A, Bigcraft I, Techtmann S, Bae D, Kim E, Jeon J, Joe S, Preterm Birth DREAM Community, Theis KR, Ng S, Lee Li YS, Bennett PR, MacIntyre DA, Stolovitzky G, Lynch SV, Albrecht J, Gomez-Lopez N, Romero R, Stevenson DK, Aghaeepour N, Tarca AL, Costello JC, Sirota M. PMID: 36945505; PMCID: PMC10029035.
      View in: PubMed   Mentions:
    6. Data-driven longitudinal characterization of neonatal health and morbidity. Sci Transl Med. 2023 02 15; 15(683):eadc9854. De Francesco D, Reiss JD, Roger J, Tang AS, Chang AL, Becker M, Phongpreecha T, Espinosa C, Morin S, Berson E, Thuraiappah M, Le BL, Ravindra NG, Payrovnaziri SN, Mataraso S, Kim Y, Xue L, Rosenstein MG, Oskotsky T, Maric I, Gaudilliere B, Carvalho B, Bateman BT, Angst MS, Prince LS, Blumenfeld YJ, Benitz WE, Fuerch JH, Shaw GM, Sylvester KG, Stevenson DK, Sirota M, Aghaeepour N. PMID: 36791208.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    7. Large-scale placenta DNA methylation integrated analysis reveals fetal sex-specific differentially methylated CpG sites and regions. Sci Rep. 2022 06 07; 12(1):9396. Andrews SV, Yang IJ, Froehlich K, Oskotsky T, Sirota M. PMID: 35672357; PMCID: PMC9174475.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    8. Different HMGCR-inhibiting statins vary in their association with increased survival in patients with COVID-19. medRxiv. 2022 Apr 29. Sperry MM, Oskotsky T, MariÄ I, Kaushal S, Takeda T, Horvath V, Powers RK, Rodas M, Furlong B, Soong M, Prabhala P, Goyal G, Carlson KE, Wong RJ, Kosti I, Le BL, Logue J, Hammond H, Frieman M, Stevenson DK, Ingber DE, Sirota M, Novak R. PMID: 35441166; PMCID: PMC9016655.
      View in: PubMed   Mentions:
    9. Bioinformatics Analysis of Publicly Available Single-Nuclei Transcriptomics Alzheimer's Disease Datasets Reveals APOE Genotype-Specific Changes Across Cell Types in Two Brain Regions. Front Aging Neurosci. 2022; 14:749991. Belonwu SA, Li Y, Bunis DG, Rao AA, Solsberg CW, Oskotsky T, Taubes AL, Grone B, Zalocusky KA, Fragiadakis GK, Huang Y, Sirota M. PMID: 35572130; PMCID: PMC9093608.
      View in: PubMed   Mentions: 1  
    10. Deep phenotyping of Alzheimer's disease leveraging electronic medical records identifies sex-specific clinical associations. Nat Commun. 2022 02 03; 13(1):675. Tang AS, Oskotsky T, Havaldar S, Mantyh WG, Bicak M, Solsberg CW, Woldemariam S, Zeng B, Hu Z, Oskotsky B, Dubal D, Allen IE, Glicksberg BS, Sirota M. PMID: 35115528; PMCID: PMC8814236.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    11. Nurturing diversity and inclusion in AI in Biomedicine through a virtual summer program for high school students. PLoS Comput Biol. 2022 01; 18(1):e1009719. Oskotsky T, Bajaj R, Burchard J, Cavazos T, Chen I, Connell WT, Eaneff S, Grant T, Kanungo I, Lindquist K, Myers-Turnbull D, Naing ZZC, Tang A, Vora B, Wang J, Karim I, Swadling C, Yang J, AI4ALL Student Cohort 2020, Lindstaedt B, Sirota M. PMID: 35100256; PMCID: PMC8830787.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    12. Author Correction: Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer's disease. Nat Aging. 2021 Dec; 1(12):1202. Taubes A, Nova P, Zalocusky KA, Kosti I, Bicak M, Zilberter MY, Hao Y, Yoon SY, Oskotsky T, Pineda S, Chen B, Aery Jones EA, Choudhary K, Grone B, Balestra ME, Chaudhry F, Paranjpe I, De Freitas J, Koutsodendris N, Chen N, Wang C, Chang W, An A, Glicksberg BS, Sirota M, Huang Y. PMID: 37117528.
      View in: PubMed   Mentions:
    13. Mortality Risk Among Patients With COVID-19 Prescribed Selective Serotonin Reuptake Inhibitor Antidepressants. JAMA Netw Open. 2021 11 01; 4(11):e2133090. Oskotsky T, Maric I, Tang A, Oskotsky B, Wong RJ, Aghaeepour N, Sirota M, Stevenson DK. PMID: 34779847; PMCID: PMC8593759.
      View in: PubMed   Mentions: 47     Fields:    Translation:HumansCells
    14. Sex-Stratified Single-Cell RNA-Seq Analysis Identifies Sex-Specific and Cell Type-Specific Transcriptional Responses in Alzheimer's Disease Across Two Brain Regions. Mol Neurobiol. 2022 Jan; 59(1):276-293. Belonwu SA, Li Y, Bunis D, Rao AA, Solsberg CW, Tang A, Fragiadakis GK, Dubal DB, Oskotsky T, Sirota M. PMID: 34669146; PMCID: PMC8786804.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    15. Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer's disease. Nat Aging. 2021 Oct; 1(10):932-947. Taubes A, Nova P, Zalocusky KA, Kosti I, Bicak M, Zilberter MY, Hao Y, Yoon SY, Oskotsky T, Pineda S, Chen B, Jones EAA, Choudhary K, Grone B, Balestra ME, Chaudhry F, Paranjpe I, De Freitas J, Koutsodendris N, Chen N, Wang C, Chang W, An A, Glicksberg BS, Sirota M, Huang Y. PMID: 36172600; PMCID: PMC9514594.
      View in: PubMed   Mentions: 10  
    16. Sex-Specific Cross Tissue Meta-Analysis Identifies Immune Dysregulation in Women With Alzheimer's Disease. Front Aging Neurosci. 2021; 13:735611. Paranjpe MD, Belonwu S, Wang JK, Oskotsky T, Gupta A, Taubes A, Zalocusky KA, Paranjpe I, Glicksberg BS, Huang Y, Sirota M. PMID: 34658838; PMCID: PMC8515049.
      View in: PubMed   Mentions: 7  
    17. Personalizing routine lab tests with machine learning. Nat Med. 2021 09; 27(9):1514-1515. Tang A, Oskotsky T, Sirota M. PMID: 34518677.
      View in: PubMed   Mentions: 1     Fields:    
    18. Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19. Sci Rep. 2021 06 10; 11(1):12310. Le BL, Andreoletti G, Oskotsky T, Vallejo-Gracia A, Rosales R, Yu K, Kosti I, Leon KE, Bunis DG, Li C, Kumar GR, White KM, García-Sastre A, Ott M, Sirota M. PMID: 34112877; PMCID: PMC8192542.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    19. Cross-Tissue Transcriptomic Analysis Leveraging Machine Learning Approaches Identifies New Biomarkers for Rheumatoid Arthritis. Front Immunol. 2021; 12:638066. Rychkov D, Neely J, Oskotsky T, Yu S, Perlmutter N, Nititham J, Carvidi A, Krueger M, Gross A, Criswell LA, Ashouri JF, Sirota M. PMID: 34177888; PMCID: PMC8223752.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    20. Drugs in COVID-19 Clinical Trials: Predicting Transporter-Mediated Drug-Drug Interactions Using In Vitro Assays and Real-World Data. Clin Pharmacol Ther. 2021 07; 110(1):108-122. Yee SW, Vora B, Oskotsky T, Zou L, Jakobsen S, Enogieru OJ, Koleske ML, Kosti I, Rödin M, Sirota M, Giacomini KM. PMID: 33759449; PMCID: PMC8217266.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    21. Decreased Mortality Rate Among COVID-19 Patients Prescribed Statins: Data From Electronic Health Records in the US. Front Med (Lausanne). 2021; 8:639804. Maric I, Oskotsky T, Kosti I, Le B, Wong RJ, Shaw GM, Sirota M, Stevenson DK. PMID: 33614688; PMCID: PMC7887302.
      View in: PubMed   Mentions: 8  
    22. Sex differences in viral entry protein expression, host responses to SARS-CoV-2, and in vitro responses to sex steroid hormone treatment in COVID-19. Res Sq. 2020 Nov 04. Sun M, Shankar R, Ko M, Chang CD, Yeh SJ, Li S, Liu K, Zhou G, Xing J, VanVelsen A, VanVelsen T, Paithankar S, Feng BY, Young K, Strug M, Turco L, Wang Z, Schadt E, Chen R, Li X, Oskotsky T, Sirota M, Glicksberg BS, Nadkarni GN, Moeser AJ, Li L, Kim S, Zhou J, Chen B. PMID: 33173861; PMCID: PMC7654875.
      View in: PubMed   Mentions:
    23. Deep posteromedial cortical rhythm in dissociation. Nature. 2020 10; 586(7827):87-94. Vesuna S, Kauvar IV, Richman E, Gore F, Oskotsky T, Sava-Segal C, Luo L, Malenka RC, Henderson JM, Nuyujukian P, Parvizi J, Deisseroth K. PMID: 32939091; PMCID: PMC7553818.
      View in: PubMed   Mentions: 51     Fields:    Translation:HumansAnimalsCells
    24. Medical students and the electronic health record: 'an epic use of time'. Am J Med. 2014 Sep; 127(9):891-5. Chi J, Kugler J, Chu IM, Loftus PD, Evans KH, Oskotsky T, Basaviah P, Braddock CH. PMID: 24907594.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
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