Bradford Gibson, PhD

TitleNon-Senate Acad Emeritus WOS
SchoolUCSF School of Pharmacy
DepartmentPharmaceutical Chemistry
Address401 Parnassus Ave.
San Francisco CA 94143
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    Collapse Biography 
    Collapse Education and Training
    University of California, Santa BarbaraB.A.1975Biochemistry

    Collapse Research 
    Collapse Research Activities and Funding
    Lysine Acetylation in N. gonorrhoeae Quorum Sensing and Biofilm Formation
    NIH/NIAID R01AI108255Mar 5, 2014 - Feb 28, 2019
    Role: Co-Principal Investigator
    TripleTOF 5600 High Resolution Mass Spectrometer
    NIH S10OD016281Jun 20, 2013 - May 31, 2014
    Role: Principal Investigator
    AB SCIEX QTRAP 5500 LC MS/MS system
    NIH/NCRR S10RR027953Jul 1, 2010 - Jun 30, 2011
    Role: Principal Investigator
    Mass spectrometry and imaging technologies in Geroscience
    NIH/NIA PL1AG032118Sep 30, 2007 - Jun 30, 2013
    Role: Principal Investigator
    QSTAR Elite Quadrupole-o-TOF LC/MS/MS System
    NIH/NCRR S10RR024615Sep 20, 2007 - Sep 19, 2008
    Role: Principal Investigator
    Basic Mechanisms in Aging and Age Related Disease
    NIH P30AG025708Jul 1, 2005 - Jun 30, 2011
    Role: Co-Investigator
    Mitochondrial Dysfunction in Aging and Disease
    NIH P01AG025901Apr 1, 2005 - Feb 28, 2013
    Role: Co-Investigator
    4000 Q TRAP triple quadrupole/linear ion trap LC/MS/MS
    NIH/NCRR S10RR021222Apr 1, 2005 - Mar 31, 2006
    Role: Principal Investigator
    Proteomics of Complex 1 Inhibition in GSH-Depleted Cells
    NIH/NINDS R21NS043620Apr 1, 2003 - Mar 31, 2006
    Role: Principal Investigator
    NIH/NCRR S10RR014601Sep 1, 2000 - Aug 31, 2001
    Role: Principal Investigator
    Innate immune response to microbial infection
    NIH P01AI044642Sep 30, 1999 - Jul 31, 2015
    Role: Co-Investigator
    Structure and Function of Haemophilus ducreyi LOS
    NIH/NIAID R01AI031254Sep 1, 1994 - Mar 31, 2008
    Role: Principal Investigator
    Bio-Organic Biomedical Mass Spectrometry Resource
    NIH P41RR001614Mar 1, 1982 - May 31, 2015
    Role: Co-Investigator
    Resource for Biocomputing, Visualization, and Informatics
    NIH/NCRR P41RR001081Jun 1, 1976 - Sep 14, 2012
    Role: Co-Investigator

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    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Meyer JG, Mukkamalla S, Steen H, Nesvizhskii AI, Gibson B, Schilling B. PIQED: automated identification and quantification of protein modifications from DIA-MS data. Nat Methods. 2017 Jun 29; 14(7):646-647. PMID: 28661500.
      View in: PubMed
    2. Post DMB, Schilling B, Reinders LM, D'Souza AK, Ketterer MR, Kiel SJ, Chande AT, Apicella MA, Gibson B. Identification and characterization of AckA-dependent protein acetylation in Neisseria gonorrhoeae. PLoS One. 2017; 12(6):e0179621. PMID: 28654654.
      View in: PubMed
    3. Schilling B, Gibson B, Hunter CL. Generation of High-Quality SWATH® Acquisition Data for Label-free Quantitative Proteomics Studies Using TripleTOF® Mass Spectrometers. Methods Mol Biol. 2017; 1550:223-233. PMID: 28188533.
      View in: PubMed
    4. Mark KA, Dumas KJ, Bhaumik D, Schilling B, Davis S, Oron TR, Sorensen DJ, Lucanic M, Brem RB, Melov S, Ramanathan A, Gibson B, Lithgow GJ. Vitamin D Promotes Protein Homeostasis and Longevity via the Stress Response Pathway Genes skn-1, ire-1, and xbp-1. Cell Rep. 2016 Oct 25; 17(5):1227-1237. PMID: 27783938.
      View in: PubMed
    5. Meyer JG, D'Souza AK, Sorensen DJ, Rardin MJ, Wolfe AJ, Gibson B, Schilling B. Quantification of Lysine Acetylation and Succinylation Stoichiometry in Proteins Using Mass Spectrometric Data-Independent Acquisitions (SWATH). J Am Soc Mass Spectrom. 2016 Nov; 27(11):1758-1771. PMID: 27590315.
      View in: PubMed
    6. Post DM, Ketterer MR, Coffin JE, Reinders LM, Munson RS, Bair T, Murphy TF, Foster ED, Gibson B, Apicella MA. Comparative Analyses of the Lipooligosaccharides from Nontypeable Haemophilus influenzae and Haemophilus haemolyticus Show Differences in Sialic Acid and Phosphorylcholine Modifications. Infect Immun. 2016 Jan 04; 84(3):765-74. PMID: 26729761; PMCID: PMC4771351.
    7. Schilling B, MacLean B, Held JM, Sahu AK, Rardin MJ, Sorensen DJ, Peters T, Wolfe AJ, Hunter CL, MacCoss MJ, Gibson B. Multiplexed, Scheduled, High-Resolution Parallel Reaction Monitoring on a Full Scan QqTOF Instrument with Integrated Data-Dependent and Targeted Mass Spectrometric Workflows. Anal Chem. 2015 Oct 20; 87(20):10222-9. PMID: 26398777.
      View in: PubMed
    8. Min SW, Chen X, Tracy TE, Li Y, Zhou Y, Wang C, Shirakawa K, Minami SS, Defensor E, Mok SA, Sohn PD, Schilling B, Cong X, Ellerby L, Gibson B, Johnson J, Krogan N, Shamloo M, Gestwicki J, Masliah E, Verdin E, Gan L. Critical role of acetylation in tau-mediated neurodegeneration and cognitive deficits. Nat Med. 2015 Oct; 21(10):1154-62. PMID: 26390242; PMCID: PMC4598295.
    9. Schilling B, Christensen D, Davis R, Sahu AK, Hu LI, Walker-Peddakotla A, Sorensen DJ, Zemaitaitis B, Gibson B, Wolfe AJ. Protein acetylation dynamics in response to carbon overflow in Escherichia coli. Mol Microbiol. 2015 Dec; 98(5):847-63. PMID: 26264774; PMCID: PMC4715485 [Available on 12/01/16].
    10. Nishida Y, Rardin MJ, Carrico C, He W, Sahu AK, Gut P, Najjar R, Fitch M, Hellerstein M, Gibson B, Verdin E. SIRT5 Regulates both Cytosolic and Mitochondrial Protein Malonylation with Glycolysis as a Major Target. Mol Cell. 2015 Jul 16; 59(2):321-32. PMID: 26073543; PMCID: PMC4571487.
    11. O'Brien R, DeGiacomo F, Holcomb J, Bonner A, Ring KL, Zhang N, Zafar K, Weiss A, Lager B, Schilling B, Gibson B, Chen S, Kwak S, Ellerby LM. Integration-independent Transgenic Huntington Disease Fragment Mouse Models Reveal Distinct Phenotypes and Life Span in Vivo. J Biol Chem. 2015 Jul 31; 290(31):19287-306. PMID: 26025364; PMCID: PMC4521048.
    12. Lim HW, Kang SG, Ryu JK, Schilling B, Fei M, Lee IS, Kehasse A, Shirakawa K, Yokoyama M, Schnölzer M, Kasler HG, Kwon HS, Gibson B, Sato H, Akassoglou K, Xiao C, Littman DR, Ott M, Verdin E. SIRT1 deacetylates ROR?t and enhances Th17 cell generation. J Exp Med. 2015 Jun 01; 212(6):973. PMID: 25987725; PMCID: PMC4451124.
    13. Rardin MJ, Schilling B, Cheng LY, MacLean BX, Sorensen DJ, Sahu AK, MacCoss MJ, Vitek O, Gibson B. MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments. Mol Cell Proteomics. 2015 Sep; 14(9):2405-19. PMID: 25987414; PMCID: PMC4563724.
    14. Lim HW, Kang SG, Ryu JK, Schilling B, Fei M, Lee IS, Kehasse A, Shirakawa K, Yokoyama M, Schnölzer M, Kasler HG, Kwon HS, Gibson B, Sato H, Akassoglou K, Xiao C, Littman DR, Ott M, Verdin E. SIRT1 deacetylates ROR?t and enhances Th17 cell generation. J Exp Med. 2015 May 04; 212(5):607-17. PMID: 25918343; PMCID: PMC4419343.
    15. Zhang Y, Bharathi SS, Rardin MJ, Uppala R, Verdin E, Gibson B, Goetzman ES. SIRT3 and SIRT5 regulate the enzyme activity and cardiolipin binding of very long-chain acyl-CoA dehydrogenase. PLoS One. 2015; 10(3):e0122297. PMID: 25811481; PMCID: PMC4374878.
    16. Abbatiello SE, Schilling B, Mani DR, Zimmerman LJ, Hall SC, MacLean B, Albertolle M, Allen S, Burgess M, Cusack MP, Gosh M, Hedrick V, Held JM, Inerowicz HD, Jackson A, Keshishian H, Kinsinger CR, Lyssand J, Makowski L, Mesri M, Rodriguez H, Rudnick P, Sadowski P, Sedransk N, Shaddox K, Skates SJ, Kuhn E, Smith D, Whiteaker JR, Whitwell C, Zhang S, Borchers CH, Fisher SJ, Gibson B, Liebler DC, MacCoss MJ, Neubert TA, Paulovich AG, Regnier FE, Tempst P, Carr SA. Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma. Mol Cell Proteomics. 2015 Sep; 14(9):2357-74. PMID: 25693799; PMCID: PMC4563721.
    17. Post DM, Held JM, Ketterer MR, Phillips NJ, Sahu A, Apicella MA, Gibson B. Comparative analyses of proteins from Haemophilus influenzae biofilm and planktonic populations using metabolic labeling and mass spectrometry. BMC Microbiol. 2014 Dec 31; 14:329. PMID: 25551439; PMCID: PMC4302520.
    18. French WR, Zimmerman LJ, Schilling B, Gibson B, Miller CA, Townsend RR, Sherrod SD, Goodwin CR, McLean JA, Tabb DL. Wavelet-based peak detection and a new charge inference procedure for MS/MS implemented in ProteoWizard's msConvert. J Proteome Res. 2015 Feb 6; 14(2):1299-307. PMID: 25411686; PMCID: PMC4324452.
    19. AbouElfetouh A, Kuhn ML, Hu LI, Scholle MD, Sorensen DJ, Sahu AK, Becher D, Antelmann H, Mrksich M, Anderson WF, Gibson B, Schilling B, Wolfe AJ. The E. coli sirtuin CobB shows no preference for enzymatic and nonenzymatic lysine acetylation substrate sites. Microbiologyopen. 2015 Feb; 4(1):66-83. PMID: 25417765; PMCID: PMC4335977.
    20. Klang IM, Schilling B, Sorensen DJ, Sahu AK, Kapahi P, Andersen JK, Swoboda P, Killilea DW, Gibson B, Lithgow GJ. Iron promotes protein insolubility and aging in C. elegans. Aging (Albany NY). 2014 Nov; 6(11):975-91. PMID: 25554795; PMCID: PMC4276790.
    21. Sharma V, Eckels J, Taylor GK, Shulman NJ, Stergachis AB, Joyner SA, Yan P, Whiteaker JR, Halusa GN, Schilling B, Gibson B, Colangelo CM, Paulovich AG, Carr SA, Jaffe JD, MacCoss MJ, MacLean B. Panorama: a targeted proteomics knowledge base. J Proteome Res. 2014 Sep 5; 13(9):4205-10. PMID: 25102069; PMCID: PMC4156235.
    22. Wilson-Edell KA, Kehasse A, Scott GK, Yau C, Rothschild DE, Schilling B, Gabriel BS, Yevtushenko MA, Hanson IM, Held JM, Gibson B, Benz CC. RPL24: a potential therapeutic target whose depletion or acetylation inhibits polysome assembly and cancer cell growth. Oncotarget. 2014 Jul 15; 5(13):5165-76. PMID: 24970821; PMCID: PMC4148130.
    23. Zawadzka AM, Schilling B, Held JM, Sahu AK, Cusack MP, Drake PM, Fisher SJ, Gibson B. Variation and quantification among a target set of phosphopeptides in human plasma by multiple reaction monitoring and SWATH-MS2 data-independent acquisition. Electrophoresis. 2014 Dec; 35(24):3487-97. PMID: 24853916; PMCID: PMC4565165.
    24. Broudy D, Killeen T, Choi M, Shulman N, Mani DR, Abbatiello SE, Mani D, Ahmad R, Sahu AK, Schilling B, Tamura K, Boss Y, Sharma V, Gibson B, Carr SA, Vitek O, MacCoss MJ, MacLean B. A framework for installable external tools in Skyline. Bioinformatics. 2014 Sep 01; 30(17):2521-3. PMID: 24813211; PMCID: PMC4147880.
    25. Kuhn ML, Zemaitaitis B, Hu LI, Sahu A, Sorensen D, Minasov G, Lima BP, Scholle M, Mrksich M, Anderson WF, Gibson B, Schilling B, Wolfe AJ. Structural, kinetic and proteomic characterization of acetyl phosphate-dependent bacterial protein acetylation. PLoS One. 2014; 9(4):e94816. PMID: 24756028; PMCID: PMC3995681.
    26. Zawadzka AM, Schilling B, Cusack MP, Sahu AK, Drake P, Fisher SJ, Benz CC, Gibson B. Phosphoprotein secretome of tumor cells as a source of candidates for breast cancer biomarkers in plasma. Mol Cell Proteomics. 2014 Apr; 13(4):1034-49. PMID: 24505115; PMCID: PMC3977182.
    27. Rasmussen JA, Post DM, Gibson B, Lindemann SR, Apicella MA, Meyerholz DK, Jones BD. Francisella tularensis Schu S4 lipopolysaccharide core sugar and O-antigen mutants are attenuated in a mouse model of tularemia. Infect Immun. 2014 Apr; 82(4):1523-39. PMID: 24452684; PMCID: PMC3993386.
    28. Rardin MJ, He W, Nishida Y, Newman JC, Carrico C, Danielson SR, Guo A, Gut P, Sahu AK, Li B, Uppala R, Fitch M, Riiff T, Zhu L, Zhou J, Mulhern D, Stevens RD, Ilkayeva OR, Newgard CB, Jacobson MP, Hellerstein M, Goetzman ES, Gibson B, Verdin E. SIRT5 regulates the mitochondrial lysine succinylome and metabolic networks. Cell Metab. 2013 Dec 03; 18(6):920-33. PMID: 24315375; PMCID: PMC4105152.
    29. Bharathi SS, Zhang Y, Mohsen AW, Uppala R, Balasubramani M, Schreiber E, Uechi G, Beck ME, Rardin MJ, Vockley J, Verdin E, Gibson B, Hirschey MD, Goetzman ES. Sirtuin 3 (SIRT3) protein regulates long-chain acyl-CoA dehydrogenase by deacetylating conserved lysines near the active site. J Biol Chem. 2013 Nov 22; 288(47):33837-47. PMID: 24121500; PMCID: PMC3837126.
    30. Jing E, O'Neill BT, Rardin MJ, Kleinridders A, Ilkeyeva OR, Ussar S, Bain JR, Lee KY, Verdin EM, Newgard CB, Gibson B, Kahn CR. Sirt3 regulates metabolic flexibility of skeletal muscle through reversible enzymatic deacetylation. Diabetes. 2013 Oct; 62(10):3404-17. PMID: 23835326; PMCID: PMC3781465.
    31. Schilling B, Hunt J, Gibson B, Apicella MA. Site-specific acylation changes in the lipid A of Escherichia coli lpxL mutants grown at high temperatures. Innate Immun. 2014 Apr; 20(3):269-82. PMID: 23812252; PMCID: PMC3983921.
    32. Abbatiello SE, Mani DR, Schilling B, Maclean B, Zimmerman LJ, Feng X, Cusack MP, Sedransk N, Hall SC, Addona T, Allen S, Dodder NG, Ghosh M, Held JM, Hedrick V, Inerowicz HD, Jackson A, Keshishian H, Kim JW, Lyssand JS, Riley CP, Rudnick P, Sadowski P, Shaddox K, Smith D, Tomazela D, Wahlander A, Waldemarson S, Whitwell CA, You J, Zhang S, Kinsinger CR, Mesri M, Rodriguez H, Borchers CH, Buck C, Fisher SJ, Gibson B, Liebler D, Maccoss M, Neubert TA, Paulovich A, Regnier F, Skates SJ, Tempst P, Wang M, Carr SA. Design, implementation and multisite evaluation of a system suitability protocol for the quantitative assessment of instrument performance in liquid chromatography-multiple reaction monitoring-MS (LC-MRM-MS). Mol Cell Proteomics. 2013 Sep; 12(9):2623-39. PMID: 23689285; PMCID: PMC3769335.
    33. Held JM, Schilling B, D'Souza AK, Srinivasan T, Behring JB, Sorensen DJ, Benz CC, Gibson B. Label-Free Quantitation and Mapping of the ErbB2 Tumor Receptor by Multiple Protease Digestion with Data-Dependent (MS1) and Data-Independent (MS2) Acquisitions. Int J Proteomics. 2013; 2013:791985. PMID: 23710360; PMCID: PMC3654371.
    34. Rardin MJ, Newman JC, Held JM, Cusack MP, Sorensen DJ, Li B, Schilling B, Mooney SD, Kahn CR, Verdin E, Gibson B. Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways. Proc Natl Acad Sci U S A. 2013 Apr 16; 110(16):6601-6. PMID: 23576753; PMCID: PMC3631688.
    35. Rardin MJ, Held JM, Gibson B. Targeted quantitation of acetylated lysine peptides by selected reaction monitoring mass spectrometry. Methods Mol Biol. 2013; 1077:121-31. PMID: 24014403; PMCID: PMC4378680.
    36. Choi SW, Gerencser AA, Ng R, Flynn JM, Melov S, Danielson SR, Gibson B, Nicholls DG, Bredesen DE, Brand MD. No consistent bioenergetic defects in presynaptic nerve terminals isolated from mouse models of Alzheimer's disease. J Neurosci. 2012 Nov 21; 32(47):16775-84. PMID: 23175831; PMCID: PMC3736741.
    37. Vernochet C, Mourier A, Bezy O, Macotela Y, Boucher J, Rardin MJ, An D, Lee KY, Ilkayeva OR, Zingaretti CM, Emanuelli B, Smyth G, Cinti S, Newgard CB, Gibson B, Larsson NG, Kahn CR. Adipose-specific deletion of TFAM increases mitochondrial oxidation and protects mice against obesity and insulin resistance. Cell Metab. 2012 Dec 05; 16(6):765-76. PMID: 23168219; PMCID: PMC3529641.
    38. Peters TW, Rardin MJ, Czerwieniec G, Evani US, Reis-Rodrigues P, Lithgow GJ, Mooney SD, Gibson B, Hughes RE. Tor1 regulates protein solubility in Saccharomyces cerevisiae. Mol Biol Cell. 2012 Dec; 23(24):4679-88. PMID: 23097491; PMCID: PMC3521677.
    39. Flynn JM, Czerwieniec GA, Choi SW, Day NU, Gibson B, Hubbard A, Melov S. Proteogenomics of synaptosomal mitochondrial oxidative stress. Free Radic Biol Med. 2012 Sep 01; 53(5):1048-60. PMID: 22796328; PMCID: PMC3436120.
    40. Ma ZQ, Polzin KO, Dasari S, Chambers MC, Schilling B, Gibson B, Tran BQ, Vega-Montoto L, Liebler DC, Tabb DL. QuaMeter: multivendor performance metrics for LC-MS/MS proteomics instrumentation. Anal Chem. 2012 Jul 17; 84(14):5845-50. PMID: 22697456; PMCID: PMC3730131.
    41. Phillips NJ, Steichen CT, Schilling B, Post DM, Niles RK, Bair TB, Falsetta ML, Apicella MA, Gibson B. Proteomic analysis of Neisseria gonorrhoeae biofilms shows shift to anaerobic respiration and changes in nutrient transport and outermembrane proteins. PLoS One. 2012; 7(6):e38303. PMID: 22701624; PMCID: PMC3368942.
    42. Held JM, Britton DJ, Scott GK, Lee EL, Schilling B, Baldwin MA, Gibson B, Benz CC. Ligand binding promotes CDK-dependent phosphorylation of ER-alpha on hinge serine 294 but inhibits ligand-independent phosphorylation of serine 305. Mol Cancer Res. 2012 Aug; 10(8):1120-32. PMID: 22669764; PMCID: PMC3950940.
    43. Agrawal P, Chen YT, Schilling B, Gibson B, Hughes RE. Ubiquitin-specific peptidase 9, X-linked (USP9X) modulates activity of mammalian target of rapamycin (mTOR). J Biol Chem. 2012 Jun 15; 287(25):21164-75. PMID: 22544753; PMCID: PMC3375539.
    44. Zhang N, Li B, Al-Ramahi I, Cong X, Held JM, Kim E, Botas J, Gibson B, Ellerby LM. Inhibition of lipid signaling enzyme diacylglycerol kinase epsilon attenuates mutant huntingtin toxicity. J Biol Chem. 2012 Jun 15; 287(25):21204-13. PMID: 22511757; PMCID: PMC3375542.
    45. Schilling B, Rardin MJ, MacLean BX, Zawadzka AM, Frewen BE, Cusack MP, Sorensen DJ, Bereman MS, Jing E, Wu CC, Verdin E, Kahn CR, Maccoss MJ, Gibson B. Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation. Mol Cell Proteomics. 2012 May; 11(5):202-14. PMID: 22454539; PMCID: PMC3418851.
    46. Drake PM, Schilling B, Niles RK, Prakobphol A, Li B, Jung K, Cho W, Braten M, Inerowicz HD, Williams K, Albertolle M, Held JM, Iacovides D, Sorensen DJ, Griffith OL, Johansen E, Zawadzka AM, Cusack MP, Allen S, Gormley M, Hall SC, Witkowska HE, Gray JW, Regnier F, Gibson B, Fisher SJ. Lectin chromatography/mass spectrometry discovery workflow identifies putative biomarkers of aggressive breast cancers. J Proteome Res. 2012 Apr 06; 11(4):2508-20. PMID: 22309216; PMCID: PMC3383053.
    47. Post DM, Yu L, Krasity BC, Choudhury B, Mandel MJ, Brennan CA, Ruby EG, McFall-Ngai MJ, Gibson B, Apicella MA. O-antigen and core carbohydrate of Vibrio fischeri lipopolysaccharide: composition and analysis of their role in Euprymna scolopes light organ colonization. J Biol Chem. 2012 Mar 09; 287(11):8515-30. PMID: 22247546; PMCID: PMC3318738.
    48. Reis-Rodrigues P, Czerwieniec G, Peters TW, Evani US, Alavez S, Gaman EA, Vantipalli M, Mooney SD, Gibson B, Lithgow GJ, Hughes RE. Proteomic analysis of age-dependent changes in protein solubility identifies genes that modulate lifespan. Aging Cell. 2012 Feb; 11(1):120-7. PMID: 22103665; PMCID: PMC3437485.
    49. Held JM, Gibson B. Regulatory control or oxidative damage? Proteomic approaches to interrogate the role of cysteine oxidation status in biological processes. Mol Cell Proteomics. 2012 Apr; 11(4):R111.013037. PMID: 22159599; PMCID: PMC3322581.
    50. Rogers AN, Chen D, McColl G, Czerwieniec G, Felkey K, Gibson B, Hubbard A, Melov S, Lithgow GJ, Kapahi P. Life span extension via eIF4G inhibition is mediated by posttranscriptional remodeling of stress response gene expression in C. elegans. Cell Metab. 2011 Jul 06; 14(1):55-66. PMID: 21723504; PMCID: PMC3220185.
    51. Cong X, Held JM, DeGiacomo F, Bonner A, Chen JM, Schilling B, Czerwieniec GA, Gibson B, Ellerby LM. Mass spectrometric identification of novel lysine acetylation sites in huntingtin. Mol Cell Proteomics. 2011 Oct; 10(10):M111.009829. PMID: 21685499; PMCID: PMC3205870.
    52. Lucanic M, Held JM, Vantipalli MC, Klang IM, Graham JB, Gibson B, Lithgow GJ, Gill MS. N-acylethanolamine signalling mediates the effect of diet on lifespan in Caenorhabditis elegans. Nature. 2011 May 12; 473(7346):226-9. PMID: 21562563; PMCID: PMC3093655.
    53. Phillips NJ, Adin DM, Stabb EV, McFall-Ngai MJ, Apicella MA, Gibson B. The lipid A from Vibrio fischeri lipopolysaccharide: a unique structure bearing a phosphoglycerol moiety. J Biol Chem. 2011 Jun 17; 286(24):21203-19. PMID: 21498521; PMCID: PMC3122182.
    54. Li B, Held JM, Schilling B, Danielson SR, Gibson B. Confident identification of 3-nitrotyrosine modifications in mass spectral data across multiple mass spectrometry platforms. J Proteomics. 2011 Oct 19; 74(11):2510-21. PMID: 21514405; PMCID: PMC3191283.
    55. Danielson SR, Held JM, Oo M, Riley R, Gibson B, Andersen JK. Quantitative mapping of reversible mitochondrial Complex I cysteine oxidation in a Parkinson disease mouse model. J Biol Chem. 2011 Mar 04; 286(9):7601-8. PMID: 21196577; PMCID: PMC3045014.
    56. Sperandio S, Poksay KS, Schilling B, Crippen D, Gibson B, Bredesen DE. Identification of new modulators and protein alterations in non-apoptotic programmed cell death. J Cell Biochem. 2010 Dec 15; 111(6):1401-12. PMID: 20830744.
      View in: PubMed
    57. Drake PM, Schilling B, Niles RK, Braten M, Johansen E, Liu H, Lerch M, Sorensen DJ, Li B, Allen S, Hall SC, Witkowska HE, Regnier FE, Gibson B, Fisher SJ. A lectin affinity workflow targeting glycosite-specific, cancer-related carbohydrate structures in trypsin-digested human plasma. Anal Biochem. 2011 Jan 01; 408(1):71-85. PMID: 20705048; PMCID: PMC3205961.
    58. Apicella MA, Post DM, Fowler AC, Jones BD, Rasmussen JA, Hunt JR, Imagawa S, Choudhury B, Inzana TJ, Maier TM, Frank DW, Zahrt TC, Chaloner K, Jennings MP, McLendon MK, Gibson B. Identification, characterization and immunogenicity of an O-antigen capsular polysaccharide of Francisella tularensis. PLoS One. 2010 Jul 06; 5(7):e11060. PMID: 20625403; PMCID: PMC2897883.
    59. Marx C, Held JM, Gibson B, Benz CC. ErbB2 trafficking and degradation associated with K48 and K63 polyubiquitination. Cancer Res. 2010 May 01; 70(9):3709-17. PMID: 20406983; PMCID: PMC2862137.
    60. Held JM, Danielson SR, Behring JB, Atsriku C, Britton DJ, Puckett RL, Schilling B, Campisi J, Benz CC, Gibson B. Targeted quantitation of site-specific cysteine oxidation in endogenous proteins using a differential alkylation and multiple reaction monitoring mass spectrometry approach. Mol Cell Proteomics. 2010 Jul; 9(7):1400-10. PMID: 20233844; PMCID: PMC2938085.
    61. Johansen EB, Szoka FC, Zaleski A, Apicella MA, Gibson B. Utilizing the O-antigen lipopolysaccharide biosynthesis pathway in Escherichia coli to interrogate the substrate specificities of exogenous glycosyltransferase genes in a combinatorial approach. Glycobiology. 2010 Jun; 20(6):763-74. PMID: 20208062; PMCID: PMC2900885.
    62. Tabb DL, Vega-Montoto L, Rudnick PA, Variyath AM, Ham AJ, Bunk DM, Kilpatrick LE, Billheimer DD, Blackman RK, Cardasis HL, Carr SA, Clauser KR, Jaffe JD, Kowalski KA, Neubert TA, Regnier FE, Schilling B, Tegeler TJ, Wang M, Wang P, Whiteaker JR, Zimmerman LJ, Fisher SJ, Gibson B, Kinsinger CR, Mesri M, Rodriguez H, Stein SE, Tempst P, Paulovich AG, Liebler DC, Spiegelman C. Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry. J Proteome Res. 2010 Feb 05; 9(2):761-76. PMID: 19921851; PMCID: PMC2818771.
    63. Drake PM, Cho W, Li B, Prakobphol A, Johansen E, Anderson NL, Regnier FE, Gibson B, Fisher SJ. Sweetening the pot: adding glycosylation to the biomarker discovery equation. Clin Chem. 2010 Feb; 56(2):223-36. PMID: 19959616; PMCID: PMC2849286.
    64. Paulovich AG, Billheimer D, Ham AJ, Vega-Montoto L, Rudnick PA, Tabb DL, Wang P, Blackman RK, Bunk DM, Cardasis HL, Clauser KR, Kinsinger CR, Schilling B, Tegeler TJ, Variyath AM, Wang M, Whiteaker JR, Zimmerman LJ, Fenyo D, Carr SA, Fisher SJ, Gibson B, Mesri M, Neubert TA, Regnier FE, Rodriguez H, Spiegelman C, Stein SE, Tempst P, Liebler DC. Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance. Mol Cell Proteomics. 2010 Feb; 9(2):242-54. PMID: 19858499; PMCID: PMC2830837.
    65. Rudnick PA, Clauser KR, Kilpatrick LE, Tchekhovskoi DV, Neta P, Blonder N, Billheimer DD, Blackman RK, Bunk DM, Cardasis HL, Ham AJ, Jaffe JD, Kinsinger CR, Mesri M, Neubert TA, Schilling B, Tabb DL, Tegeler TJ, Vega-Montoto L, Variyath AM, Wang M, Wang P, Whiteaker JR, Zimmerman LJ, Carr SA, Fisher SJ, Gibson B, Paulovich AG, Regnier FE, Rodriguez H, Spiegelman C, Tempst P, Liebler DC, Stein SE. Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses. Mol Cell Proteomics. 2010 Feb; 9(2):225-41. PMID: 19837981; PMCID: PMC2830836.
    66. Lee BY, Jethwaney D, Schilling B, Clemens DL, Gibson B, Horwitz MA. The Mycobacterium bovis bacille Calmette-Guerin phagosome proteome. Mol Cell Proteomics. 2010 Jan; 9(1):32-53. PMID: 19815536; PMCID: PMC2808266.
    67. Johansen E, Schilling B, Lerch M, Niles RK, Liu H, Li B, Allen S, Hall SC, Witkowska HE, Regnier FE, Gibson B, Fisher SJ, Drake PM. A lectin HPLC method to enrich selectively-glycosylated peptides from complex biological samples. J Vis Exp. 2009 Oct 01; (32). PMID: 19798022; PMCID: PMC2762330.
    68. Danielson SR, Held JM, Schilling B, Oo M, Gibson B, Andersen JK. Preferentially increased nitration of alpha-synuclein at tyrosine-39 in a cellular oxidative model of Parkinson's disease. Anal Chem. 2009 Sep 15; 81(18):7823-8. PMID: 19697948; PMCID: PMC2748813.
    69. Ma ZQ, Dasari S, Chambers MC, Litton MD, Sobecki SM, Zimmerman LJ, Halvey PJ, Schilling B, Drake PM, Gibson B, Tabb DL. IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering. J Proteome Res. 2009 Aug; 8(8):3872-81. PMID: 19522537; PMCID: PMC2810655.
    70. Gafni J, Cong X, Chen SF, Gibson B, Ellerby LM. Calpain-1 cleaves and activates caspase-7. J Biol Chem. 2009 Sep 11; 284(37):25441-9. PMID: 19617626; PMCID: PMC2757245.
    71. Addona TA, Abbatiello SE, Schilling B, Skates SJ, Mani DR, Bunk DM, Spiegelman CH, Zimmerman LJ, Ham AJ, Keshishian H, Hall SC, Allen S, Blackman RK, Borchers CH, Buck C, Cardasis HL, Cusack MP, Dodder NG, Gibson B, Held JM, Hiltke T, Jackson A, Johansen EB, Kinsinger CR, Li J, Mesri M, Neubert TA, Niles RK, Pulsipher TC, Ransohoff D, Rodriguez H, Rudnick PA, Smith D, Tabb DL, Tegeler TJ, Variyath AM, Vega-Montoto LJ, Wahlander A, Waldemarson S, Wang M, Whiteaker JR, Zhao L, Anderson NL, Fisher SJ, Liebler DC, Paulovich AG, Regnier FE, Tempst P, Carr SA. Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma. Nat Biotechnol. 2009 Jul; 27(7):633-41. PMID: 19561596; PMCID: PMC2855883.
    72. Atsriku C, Britton DJ, Held JM, Schilling B, Scott GK, Gibson B, Benz CC, Baldwin MA. Systematic mapping of posttranslational modifications in human estrogen receptor-alpha with emphasis on novel phosphorylation sites. Mol Cell Proteomics. 2009 Mar; 8(3):467-80. PMID: 18984578; PMCID: PMC2649810.
    73. Britton DJ, Scott GK, Schilling B, Atsriku C, Held JM, Gibson B, Benz CC, Baldwin MA. A novel serine phosphorylation site detected in the N-terminal domain of estrogen receptor isolated from human breast cancer cells. J Am Soc Mass Spectrom. 2008 May; 19(5):729-40. PMID: 18367407.
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    74. Guo X, Bandyopadhyay P, Schilling B, Young MM, Fujii N, Aynechi T, Guy RK, Kuntz ID, Gibson B. Partial acetylation of lysine residues improves intraprotein cross-linking. Anal Chem. 2008 Feb 15; 80(4):951-60. PMID: 18201069.
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    75. Adin DM, Phillips NJ, Gibson B, Apicella MA, Ruby EG, McFall-Ngai MJ, Hall DB, Stabb EV. Characterization of htrB and msbB mutants of the light organ symbiont Vibrio fischeri. Appl Environ Microbiol. 2008 Feb; 74(3):633-44. PMID: 18065606; PMCID: PMC2227739.
    76. Murray J, Schilling B, Row RH, Yoo CB, Gibson B, Marusich MF, Capaldi RA. Small-scale immunopurification of cytochrome c oxidase for a high-throughput multiplexing analysis of enzyme activity and amount. Biotechnol Appl Biochem. 2007 Dec; 48(Pt 4):167-78. PMID: 17508937.
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    77. Johnston JW, Coussens NP, Allen S, Houtman JC, Turner KH, Zaleski A, Ramaswamy S, Gibson B, Apicella MA. Characterization of the N-acetyl-5-neuraminic acid-binding site of the extracytoplasmic solute receptor (SiaP) of nontypeable Haemophilus influenzae strain 2019. J Biol Chem. 2008 Jan 11; 283(2):855-65. PMID: 17947229.
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    78. Johnston JW, Zaleski A, Allen S, Mootz JM, Armbruster D, Gibson B, Apicella MA, Munson RS. Regulation of sialic acid transport and catabolism in Haemophilus influenzae. Mol Microbiol. 2007 Oct; 66(1):26-39. PMID: 17880422.
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    79. Post DM, Gibson B. Proposed second class of Haemophilus ducreyi strains show altered protein and lipooligosaccharide profiles. Proteomics. 2007 Sep; 7(17):3131-42. PMID: 17676659.
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    80. McLendon MK, Schilling B, Hunt JR, Apicella MA, Gibson B. Identification of LpxL, a late acyltransferase of Francisella tularensis. Infect Immun. 2007 Nov; 75(11):5518-31. PMID: 17724076; PMCID: PMC2168286.
    81. Jethwaney D, Islam MR, Leidal KG, de Bernabe DB, Campbell KP, Nauseef WM, Gibson B. Proteomic analysis of plasma membrane and secretory vesicles from human neutrophils. Proteome Sci. 2007 Aug 10; 5:12. PMID: 17692124; PMCID: PMC2075486.
    82. Atsriku C, Benz CC, Scott GK, Gibson B, Baldwin MA. Quantification of cysteine oxidation in human estrogen receptor by mass spectrometry. Anal Chem. 2007 Apr 15; 79(8):3083-90. PMID: 17373775; PMCID: PMC2536661.
    83. Schilling B, McLendon MK, Phillips NJ, Apicella MA, Gibson B. Characterization of lipid A acylation patterns in Francisella tularensis, Francisella novicida, and Francisella philomiragia using multiple-stage mass spectrometry and matrix-assisted laser desorption/ionization on an intermediate vacuum source linear ion trap. Anal Chem. 2007 Feb 01; 79(3):1034-42. PMID: 17263332; PMCID: PMC2556175.
    84. Post DM, Munson RS, Baker B, Zhong H, Bozue JA, Gibson B. Identification of genes involved in the expression of atypical lipooligosaccharide structures from a second class of Haemophilus ducreyi. Infect Immun. 2007 Jan; 75(1):113-21. PMID: 17030566; PMCID: PMC1828386.
    85. Erwin AL, Allen S, Ho DK, Bonthuis PJ, Bonthius PJ, Jarisch J, Nelson KL, Tsao DL, Unrath WC, Watson ME, Gibson B, Apicella MA, Smith AL. Role of lgtC in resistance of nontypeable Haemophilus influenzae strain R2866 to human serum. Infect Immun. 2006 Nov; 74(11):6226-35. PMID: 16966407; PMCID: PMC1695526.
    86. Held JM, White MP, Fisher AL, Gibson B, Lithgow GJ, Gill MS. DAF-12-dependent rescue of dauer formation in Caenorhabditis elegans by (25S)-cholestenoic acid. Aging Cell. 2006 Aug; 5(4):283-91. PMID: 16913876.
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    87. Schilling B, Gafni J, Torcassi C, Cong X, Row RH, LaFevre-Bernt MA, Cusack MP, Ratovitski T, Hirschhorn R, Ross CA, Gibson B, Ellerby LM. Huntingtin phosphorylation sites mapped by mass spectrometry. Modulation of cleavage and toxicity. J Biol Chem. 2006 Aug 18; 281(33):23686-97. PMID: 16782707.
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    88. Post DM, Zhang D, Weiss JP, Gibson B. Stable isotope metabolic labeling of Neisseria meningitidis lipooligosaccharide. J Endotoxin Res. 2006; 12(2):93-8. PMID: 16690012.
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    89. Benz CC, Atsriku C, Yau C, Britton D, Schilling B, Gibson B, Baldwin MA, Scott GK. Novel pathways associated with quinone-induced stress in breast cancer cells. Drug Metab Rev. 2006; 38(4):601-13. PMID: 17145690.
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    90. Post DM, Mungur R, Gibson B, Munson RS. Identification of a novel sialic acid transporter in Haemophilus ducreyi. Infect Immun. 2005 Oct; 73(10):6727-35. PMID: 16177350; PMCID: PMC1230923.
    91. Allen S, Zaleski A, Johnston JW, Gibson B, Apicella MA. Novel sialic acid transporter of Haemophilus influenzae. Infect Immun. 2005 Sep; 73(9):5291-300. PMID: 16113244; PMCID: PMC1231074.
    92. Post DM, Zhang D, Eastvold JS, Teghanemt A, Gibson B, Weiss JP. Biochemical and functional characterization of membrane blebs purified from Neisseria meningitidis serogroup B. J Biol Chem. 2005 Nov 18; 280(46):38383-94. PMID: 16103114.
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    93. Schilling B, Murray J, Yoo CB, Row RH, Cusack MP, Capaldi RA, Gibson B. Proteomic analysis of succinate dehydrogenase and ubiquinol-cytochrome c reductase (Complex II and III) isolated by immunoprecipitation from bovine and mouse heart mitochondria. Biochim Biophys Acta. 2006 Feb; 1762(2):213-22. PMID: 16120479.
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    94. Edwards KJ, Allen S, Gibson B, Campagnari AA. Characterization of a cluster of three glycosyltransferase enzymes essential for Moraxella catarrhalis lipooligosaccharide assembly. J Bacteriol. 2005 May; 187(9):2939-47. PMID: 15838019; PMCID: PMC1082826.
    95. Schilling B, Aggeler R, Schulenberg B, Murray J, Row RH, Capaldi RA, Gibson B. Mass spectrometric identification of a novel phosphorylation site in subunit NDUFA10 of bovine mitochondrial complex I. FEBS Lett. 2005 Apr 25; 579(11):2485-90. PMID: 15848193.
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    96. Gibson B. The human mitochondrial proteome: oxidative stress, protein modifications and oxidative phosphorylation. Int J Biochem Cell Biol. 2005 May; 37(5):927-34. PMID: 15743667.
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    97. Schilling B, Bharath M M S, Row RH, Murray J, Cusack MP, Capaldi RA, Freed CR, Prasad KN, Andersen JK, Gibson B. Rapid purification and mass spectrometric characterization of mitochondrial NADH dehydrogenase (Complex I) from rodent brain and a dopaminergic neuronal cell line. Mol Cell Proteomics. 2005 Jan; 4(1):84-96. PMID: 15591592.
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    98. Gill MS, Held JM, Fisher AL, Gibson B, Lithgow GJ. Lipophilic regulator of a developmental switch in Caenorhabditis elegans. Aging Cell. 2004 Dec; 3(6):413-21. PMID: 15569358.
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    99. Phillips NJ, Schilling B, McLendon MK, Apicella MA, Gibson B. Novel modification of lipid A of Francisella tularensis. Infect Immun. 2004 Sep; 72(9):5340-8. PMID: 15322031; PMCID: PMC517411.
    100. Pupo E, Phillips NJ, Gibson B, Apicella MA, Hardy E. Matrix-assisted laser desorption/ionization-time of flight-mass spectrometry of lipopolysaccharide species separated by slab-polyacrylamide gel electrophoresis: high-resolution separation and molecular weight determination of lipooligosaccharides from Vibrio fischeri strain HMK. Electrophoresis. 2004 Jul; 25(14):2156-64. PMID: 15273999.
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    101. Gaucher SP, Taylor SW, Fahy E, Zhang B, Warnock DE, Ghosh SS, Gibson B. Expanded coverage of the human heart mitochondrial proteome using multidimensional liquid chromatography coupled with tandem mass spectrometry. J Proteome Res. 2004 May-Jun; 3(3):495-505. PMID: 15253431.
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    102. Gibson B. Exploiting proteomics in the discovery of drugs that target mitochondrial oxidative damage. Sci Aging Knowledge Environ. 2004 Mar 17; 2004(11):pe12. PMID: 15028863.
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    103. Jin K, Mao XO, Cottrell B, Schilling B, Xie L, Row RH, Sun Y, Peel A, Childs J, Gendeh G, Gibson B, Greenberg DA. Proteomic and immunochemical characterization of a role for stathmin in adult neurogenesis. FASEB J. 2004 Feb; 18(2):287-99. PMID: 14769823.
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    104. Bensing BA, Gibson B, Sullam PM. The Streptococcus gordonii platelet binding protein GspB undergoes glycosylation independently of export. J Bacteriol. 2004 Feb; 186(3):638-45. PMID: 14729688; PMCID: PMC321503.
    105. Luke NR, Allen S, Gibson B, Campagnari AA. Identification of a 3-deoxy-D-manno-octulosonic acid biosynthetic operon in Moraxella catarrhalis and analysis of a KdsA-deficient isogenic mutant. Infect Immun. 2003 Nov; 71(11):6426-34. PMID: 14573664; PMCID: PMC219605.
    106. Rao RV, Poksay KS, Castro-Obregon S, Schilling B, Row RH, del Rio G, Gibson B, Ellerby HM, Bredesen DE. Molecular components of a cell death pathway activated by endoplasmic reticulum stress. J Biol Chem. 2004 Jan 02; 279(1):177-87. PMID: 14561754.
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    107. Scheffler NK, Falick AM, Hall SC, Ray WC, Post DM, Munson RS, Gibson B. Proteome of Haemophilus ducreyi by 2-D SDS-PAGE and mass spectrometry: strain variation, virulence, and carbohydrate expression. J Proteome Res. 2003 Sep-Oct; 2(5):523-33. PMID: 14582649.
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    108. Knight ZA, Schilling B, Row RH, Kenski DM, Gibson B, Shokat KM. Phosphospecific proteolysis for mapping sites of protein phosphorylation. Nat Biotechnol. 2003 Sep; 21(9):1047-54. PMID: 12923550.
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    109. Schilling B, Row RH, Gibson B, Guo X, Young MM. MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically crosslinked peptides. J Am Soc Mass Spectrom. 2003 Aug; 14(8):834-50. PMID: 12892908.
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    110. Lee JC, Taylor CV, Gaucher SP, Toneff T, Taupenot L, Yasothornsrikul S, Mahata SK, Sei C, Parmer RJ, Neveu JM, Lane WS, Gibson B, O'Connor DT, Hook VY. Primary sequence characterization of catestatin intermediates and peptides defines proteolytic cleavage sites utilized for converting chromogranin a into active catestatin secreted from neuroendocrine chromaffin cells. Biochemistry. 2003 Jun 17; 42(23):6938-46. PMID: 12795588.
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    111. Goon S, Schilling B, Tullius MV, Gibson B, Bertozzi CR. Metabolic incorporation of unnatural sialic acids into Haemophilus ducreyi lipooligosaccharides. Proc Natl Acad Sci U S A. 2003 Mar 18; 100(6):3089-94. PMID: 12615992; PMCID: PMC152251.
    112. Taylor SW, Fahy E, Zhang B, Glenn GM, Warnock DE, Wiley S, Murphy AN, Gaucher SP, Capaldi RA, Gibson B, Ghosh SS. Characterization of the human heart mitochondrial proteome. Nat Biotechnol. 2003 Mar; 21(3):281-6. PMID: 12592411.
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    113. Post DM, Ketterer MR, Phillips NJ, Gibson B, Apicella MA. The msbB mutant of Neisseria meningitidis strain NMB has a defect in lipooligosaccharide assembly and transport to the outer membrane. Infect Immun. 2003 Feb; 71(2):647-55. PMID: 12540541; PMCID: PMC145375.
    114. Sun S, Scheffler NK, Gibson B, Wang J, Munson RS. Identification and characterization of the N-acetylglucosamine glycosyltransferase gene of Haemophilus ducreyi. Infect Immun. 2002 Oct; 70(10):5887-92. PMID: 12228324; PMCID: PMC128345.
    115. Taylor SW, Warnock DE, Glenn GM, Zhang B, Fahy E, Gaucher SP, Capaldi RA, Gibson B, Ghosh SS. An alternative strategy to determine the mitochondrial proteome using sucrose gradient fractionation and 1D PAGE on highly purified human heart mitochondria. J Proteome Res. 2002 Sep-Oct; 1(5):451-8. PMID: 12645917.
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    116. Tullius MV, Phillips NJ, Scheffler NK, Samuels NM, Munson Jr RS, Hansen EJ, Stevens-Riley M, Campagnari AA, Gibson B. The lbgAB gene cluster of Haemophilus ducreyi encodes a beta-1,4-galactosyltransferase and an alpha-1,6-DD-heptosyltransferase involved in lipooligosaccharide biosynthesis. Infect Immun. 2002 Jun; 70(6):2853-61. PMID: 12010972; PMCID: PMC128009.
    117. Schilling B, Gibson B, Filiatrault M, Campagnari AA. Characterization of lipooligosaccharides from Haemophilus ducreyi containing polylactosamine repeats. J Am Soc Mass Spectrom. 2002 Jun; 13(6):724-34. PMID: 12056572.
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    118. Jones PA, Samuels NM, Phillips NJ, Munson RS, Bozue JA, Arseneau JA, Nichols WA, Zaleski A, Gibson B, Apicella MA. Haemophilus influenzae type b strain A2 has multiple sialyltransferases involved in lipooligosaccharide sialylation. J Biol Chem. 2002 Apr 26; 277(17):14598-611. PMID: 11842084.
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    119. Post DM, Phillips NJ, Shao JQ, Entz DD, Gibson B, Apicella MA. Intracellular survival of Neisseria gonorrhoeae in male urethral epithelial cells: importance of a hexaacyl lipid A. Infect Immun. 2002 Feb; 70(2):909-20. PMID: 11796626; PMCID: PMC127693.
    120. Schilling B, Goon S, Samuels NM, Gaucher SP, Leary JA, Bertozzi CR, Gibson B. Biosynthesis of sialylated lipooligosaccharides in Haemophilus ducreyi is dependent on exogenous sialic acid and not mannosamine. Incorporation studies using N-acylmannosamine analogues, N-glycolylneuraminic acid, and 13C-labeled N-acetylneuraminic acid. Biochemistry. 2001 Oct 23; 40(42):12666-77. PMID: 11601991.
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    121. Scheffler NK, Miller SW, Carroll AK, Anderson C, Davis RE, Ghosh SS, Gibson B. Two-dimensional electrophoresis and mass spectrometric identification of mitochondrial proteins from an SH-SY5Y neuroblastoma cell line. Mitochondrion. 2001 Aug; 1(2):161-79. PMID: 16120276.
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    122. Hoang VM, Foulk R, Clauser K, Burlingame A, Gibson B, Fisher SJ. Functional proteomics: examining the effects of hypoxia on the cytotrophoblast protein repertoire. Biochemistry. 2001 Apr 03; 40(13):4077-86. PMID: 11300788.
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    123. Sarver A, Scheffler NK, Shetlar MD, Gibson B. Analysis of peptides and proteins containing nitrotyrosine by matrix-assisted laser desorption/ionization mass spectrometry. J Am Soc Mass Spectrom. 2001 Apr; 12(4):439-48. PMID: 11322190.
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    124. Young MM, Tang N, Hempel JC, Oshiro CM, Taylor EW, Kuntz ID, Gibson B, Dollinger G. High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry. Proc Natl Acad Sci U S A. 2000 May 23; 97(11):5802-6. PMID: 10811876; PMCID: PMC18514.
    125. Phillips NJ, Miller TJ, Engstrom JJ, Melaugh W, McLaughlin R, Apicella MA, Gibson B. Characterization of chimeric lipopolysaccharides from Escherichia coli strain JM109 transformed with lipooligosaccharide synthesis genes (lsg) from Haemophilus influenzae. J Biol Chem. 2000 Feb 18; 275(7):4747-58. PMID: 10671507.
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    126. Samuels NM, Gibson B, Miller SM. Investigation of the kinetic mechanism of cytidine 5'-monophosphate N-acetylneuraminic acid synthetase from Haemophilus ducreyi with new insights on rate-limiting steps from product inhibition analysis. Biochemistry. 1999 May 11; 38(19):6195-203. PMID: 10320348.
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    127. Tullius MV, Vann WF, Gibson B. Covalent modification of Lys19 in the CTP binding site of cytidine 5'-monophosphate N-acetylneuraminic acid synthetase. Protein Sci. 1999 Mar; 8(3):666-75. PMID: 10091669; PMCID: PMC2144288.
    128. Wong DK, Lee BY, Horwitz MA, Gibson B. Identification of fur, aconitase, and other proteins expressed by Mycobacterium tuberculosis under conditions of low and high concentrations of iron by combined two-dimensional gel electrophoresis and mass spectrometry. Infect Immun. 1999 Jan; 67(1):327-36. PMID: 9864233; PMCID: PMC96314.
    129. Gibson B, Campagnari AA, Melaugh W, Phillips NJ, Apicella MA, Grass S, Wang J, Palmer KL, Munson RS. Characterization of a transposon Tn916-generated mutant of Haemophilus ducreyi 35000 defective in lipooligosaccharide biosynthesis. J Bacteriol. 1997 Aug; 179(16):5062-71. PMID: 9260947; PMCID: PMC179363.
    130. Wong DK, Gobin J, Horwitz MA, Gibson B. Characterization of exochelins of Mycobacterium avium: evidence for saturated and unsaturated and for acid and ester forms. J Bacteriol. 1996 Nov; 178(21):6394-8. PMID: 8892850; PMCID: PMC178521.
    131. Tullius MV, Munson RS, Wang J, Gibson B. Purification, cloning, and expression of a cytidine 5'-monophosphate N-acetylneuraminic acid synthetase from Haemophilus ducreyi. J Biol Chem. 1996 Jun 28; 271(26):15373-80. PMID: 8663048.
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    132. Phillips NJ, McLaughlin R, Miller TJ, Apicella MA, Gibson B. Characterization of two transposon mutants from Haemophilus influenzae type b with altered lipooligosaccharide biosynthesis. Biochemistry. 1996 May 07; 35(18):5937-47. PMID: 8639556.
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    133. Melaugh W, Campagnari AA, Gibson B. The lipooligosaccharides of Haemophilus ducreyi are highly sialylated. J Bacteriol. 1996 Jan; 178(2):564-70. PMID: 8550483; PMCID: PMC177695.
    134. Melaugh W, Phillips NJ, Campagnari AA, Tullius MV, Gibson B. Structure of the major oligosaccharide from the lipooligosaccharide of Haemophilus ducreyi strain 35000 and evidence for additional glycoforms. Biochemistry. 1994 Nov 08; 33(44):13070-8. PMID: 7947712.
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    135. Kim JJ, Phillips NJ, Gibson B, Griffiss JM, Yamasaki R. Meningococcal group A lipooligosaccharides (LOS): preliminary structural studies and characterization of serotype-associated and conserved LOS epitopes. Infect Immun. 1994 May; 62(5):1566-75. PMID: 7513302; PMCID: PMC186357.
    136. Gibson B, Medzihradszky D, Hines WM, Auriola S, Kenyon GL. Mass spectrometric characterization of a series of adenosylated peptides acting as bisubstrate analogs of protein kinases. J Am Soc Mass Spectrom. 1994 May; 5(5):443-51. PMID: 24222599.
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    137. Falick AM, Hines WM, Medzihradszky KF, Baldwin MA, Gibson B. Low-mass ions produced from peptides by high-energy collision-induced dissociation in tandem mass spectrometry. J Am Soc Mass Spectrom. 1993 Nov; 4(11):882-93. PMID: 24227532.
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    138. Gibson B, Melaugh W, Phillips NJ, Apicella MA, Campagnari AA, Griffiss JM. Investigation of the structural heterogeneity of lipooligosaccharides from pathogenic Haemophilus and Neisseria species and of R-type lipopolysaccharides from Salmonella typhimurium by electrospray mass spectrometry. J Bacteriol. 1993 May; 175(9):2702-12. PMID: 8386724; PMCID: PMC204573.
    139. Phillips NJ, Apicella MA, Griffiss JM, Gibson B. Structural studies of the lipooligosaccharides from Haemophilus influenzae type b strain A2. Biochemistry. 1993 Mar 02; 32(8):2003-12. PMID: 8448159.
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    140. Stahl N, Baldwin MA, Teplow DB, Hood L, Gibson B, Burlingame AL, Prusiner SB. Structural studies of the scrapie prion protein using mass spectrometry and amino acid sequencing. Biochemistry. 1993 Mar 02; 32(8):1991-2002. PMID: 8448158.
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    141. Melaugh W, Phillips NJ, Campagnari AA, Karalus R, Gibson B. Partial characterization of the major lipooligosaccharide from a strain of Haemophilus ducreyi, the causative agent of chancroid, a genital ulcer disease. J Biol Chem. 1992 Jul 05; 267(19):13434-9. PMID: 1618845.
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    142. Phillips NJ, Apicella MA, Griffiss JM, Gibson B. Structural characterization of the cell surface lipooligosaccharides from a nontypable strain of Haemophilus influenzae. Biochemistry. 1992 May 12; 31(18):4515-26. PMID: 1581306.
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    143. Hines WM, Falick AM, Burlingame AL, Gibson B. Pattern-based algorithm for peptide sequencing from tandem high energy collision-induced dissociation mass spectra. J Am Soc Mass Spectrom. 1992 May; 3(4):326-36. PMID: 24243043.
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    144. Mandrell RE, McLaughlin R, Aba Kwaik Y, Lesse A, Yamasaki R, Gibson B, Spinola SM, Apicella MA. Lipooligosaccharides (LOS) of some Haemophilus species mimic human glycosphingolipids, and some LOS are sialylated. Infect Immun. 1992 Apr; 60(4):1322-8. PMID: 1372291; PMCID: PMC256999.
    145. Medzihradszky KF, Gibson B, Kaur S, Yu ZH, Medzihradszky D, Burlingame AL, Bass NM. The primary structure of fatty-acid-binding protein from nurse shark liver. Structural and evolutionary relationship to the mammalian fatty-acid-binding protein family. Eur J Biochem. 1992 Feb 01; 203(3):327-39. PMID: 1735421.
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    146. Gibson B, Tang DZ, Mandrell R, Kelly M, Spindel ER. Bombinin-like peptides with antimicrobial activity from skin secretions of the Asian toad, Bombina orientalis. J Biol Chem. 1991 Dec 5; 266(34):23103-11. PMID: 1744108.
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    147. John CM, Griffiss JM, Apicella MA, Mandrell RE, Gibson B. The structural basis for pyocin resistance in Neisseria gonorrhoeae lipooligosaccharides. J Biol Chem. 1991 Oct 15; 266(29):19303-11. PMID: 1918047.
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    148. Mandrell RE, Kim JJ, John CM, Gibson B, Sugai JV, Apicella MA, Griffiss JM, Yamasaki R. Endogenous sialylation of the lipooligosaccharides of Neisseria meningitidis. J Bacteriol. 1991 May; 173(9):2823-32. PMID: 1708379; PMCID: PMC207863.
    149. Gibson B, Falick AM, Lipka JJ, Waskell LA. Mass spectrometric analysis of rabbit and bovine trypsin-solubilized cytochrome b5. J Protein Chem. 1990 Dec; 9(6):695-703. PMID: 2073321.
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    150. Baldwin MA, Stahl N, Reinders LG, Gibson B, Prusiner SB, Burlingame AL. Permethylation and tandem mass spectrometry of oligosaccharides having free hexosamine: analysis of the glycoinositol phospholipid anchor glycan from the scrapie prion protein. Anal Biochem. 1990 Nov 15; 191(1):174-82. PMID: 1981823.
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    151. Phillips NJ, John CM, Reinders LG, Gibson B, Apicella MA, Griffiss JM. Structural models for the cell surface lipooligosaccharides of Neisseria gonorrhoeae and Haemophilus influenzae. Biomed Environ Mass Spectrom. 1990 Nov; 19(11):731-45. PMID: 2127548.
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    152. Farsam H, Eiger S, Lameh J, Rezvani A, Gibson B, Sadée W. Morphine impurity with opioid activity is identified as 10 alpha-hydroxymorphine. Pharm Res. 1990 Nov; 7(11):1205-7. PMID: 1963495.
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    153. John CM, Gibson B. Amino and hydrazino alkyl benzoates as derivatizing agents for the separation and mass spectrometric analysis of oligosaccharides from bacterial lipooligosaccharides. Anal Biochem. 1990 Jun; 187(2):281-91. PMID: 2200308.
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    154. Gibson B, Webb JW, Yamasaki R, Fisher SJ, Burlingame AL, Mandrell RE, Schneider H, Griffiss JM. Structure and heterogeneity of the oligosaccharides from the lipopolysaccharides of a pyocin-resistant Neisseria gonorrhoeae. Proc Natl Acad Sci U S A. 1989 Jan; 86(1):17-21. PMID: 2492099; PMCID: PMC286394.
    155. Griffiss JM, Schneider H, Mandrell RE, Yamasaki R, Jarvis GA, Kim JJ, Gibson B, Hamadeh R, Apicella MA. Lipooligosaccharides: the principal glycolipids of the neisserial outer membrane. Rev Infect Dis. 1988 Jul-Aug; 10 Suppl 2:S287-95. PMID: 2460911.
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    156. Gibson B, Yu ZG, Aberth W, Burlingame AL, Bass NM. Revision of the blocked N terminus of rat heart fatty acid-binding protein by liquid secondary ion mass spectrometry. J Biol Chem. 1988 Mar 25; 263(9):4182-5. PMID: 3162235.
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    157. Hochhaus G, Gibson B, Sadée W. Biotinylated human beta-endorphins as probes for the opioid receptor. J Biol Chem. 1988 Jan 5; 263(1):92-7. PMID: 2826453.
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    158. Higaki JN, Gibson B, Craik CS. Evolution of catalysis in the serine proteases. Cold Spring Harb Symp Quant Biol. 1987; 52:615-21. PMID: 3331347.
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    159. Griffiss JM, Schneider H, Mandrell RE, Jarvis GA, Kim JJ, Gibson B, Apicella MA. The immunochemistry of neisserial LOS. Antonie Van Leeuwenhoek. 1987; 53(6):501-7. PMID: 2453159.
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    160. Hochhaus G, Gibson B, Sadée W. Development of a biotin-avidin probe for detecting opioid receptors. NIDA Res Monogr. 1986; 75:33-6. PMID: 2828982.
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