Stephanie Cohen, MD

Title(s)Assistant Clinical Professor, Medicine
SchoolSchool of Medicine
Address1701 Divisadero St
San Francisco CA 94115
Phone--
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    University of California, San FranciscoResidency Internal Medicine

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Selective Whole-Genome Amplification as a Tool to Enrich Specimens with Low Treponema pallidum Genomic DNA Copies for Whole-Genome Sequencing. mSphere. 2022 May 02; e0000922. Thurlow CM, Joseph SJ, Ganova-Raeva L, Katz SS, Pereira L, Chen C, Debra A, Vilfort K, Workowski K, Cohen SE, Reno H, Sun Y, Burroughs M, Sheth M, Chi KH, Danavall D, Philip SS, Cao W, Kersh EN, Pillay A. PMID: 35491834.
      View in: PubMed   Mentions:
    2. Public Health Detailing on Sexual Health Care in San Francisco: Learnings From Real-World Implementation. Public Health Rep. 2022 Mar 10; 333549221081130. Stojanovski K, Decker A, Brosnan H, King EJ, Cohen SE, Fuchs JD, Sachdev D. PMID: 35264028.
      View in: PubMed   Mentions:
    3. Contact tracing outcomes among household contacts of fully vaccinated COVID-19 patients - San Francisco, California, January 29-July 2, 2021. Clin Infect Dis. 2021 Dec 20. Sachdev DD, Chew Ng R, Sankaran M, Ernst A, Hernandez KT, Servellita V, Sotomayor-Gonzalez A, Stoltey J, Cohen SE, Nguyen TQ, Chiu C, Philip S. PMID: 34928340; PMCID: PMC8755335.
      View in: PubMed   Mentions:
    4. Concurrent COVID-19 and Acute HIV: A Case Report and Diagnostic Review. Case Rep Med. 2021; 2021:2653678. Johnson KA, Graglia S, Lynch ED, De Mesa J, Antunez E, Torres S, Coffey S, Cohen SE. PMID: 34824585; PMCID: PMC8610722.
      View in: PubMed   Mentions:
    5. Factors Contributing to Missing COVID-19 Cases During Contact Tracing-Reply. JAMA Intern Med. 2021 07 01; 181(7):1015. Sachdev DD, Cohen SE, Scheer S. PMID: 33720284.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    6. Decreased Time From Human Immunodeficiency Virus Diagnosis to Care, Antiretroviral Therapy Initiation, and Virologic Suppression during the Citywide RAPID Initiative in San Francisco. Clin Infect Dis. 2021 07 01; 73(1):e122-e128. Bacon O, Chin J, Cohen SE, Hessol NA, Sachdev D, Coffey S, Scheer S, Buchbinder S, Havlir DV, Hsu L. PMID: 32449916; PMCID: PMC8561247.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    7. Acute HIV at the Time of Initiation of Pre-exposure or Post-exposure Prophylaxis: Impact on Drug Resistance and Clinical Outcomes. J Acquir Immune Defic Syndr. 2021 06 01; 87(2):818-825. Johnson KA, Chen MJ, Kohn R, Sachdev D, Bacon O, Lee S, Cohen SE. PMID: 33512849.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    8. Lubrication Practices and Receptive Anal Sex: Implications for STI Transmission and Prevention. Sex Med. 2021 Jun; 9(3):100341. Lee A, Gaither TW, Langston ME, Cohen SE, Breyer BN. PMID: 33789174; PMCID: PMC8240147.
      View in: PubMed   Mentions:
    9. Outcomes of Contact Tracing in San Francisco, California-Test and Trace During Shelter-in-Place. JAMA Intern Med. 2021 03 01; 181(3):381-383. Sachdev DD, Brosnan HK, Reid MJA, Kirian M, Cohen SE, Nguyen TQ, Scheer S. PMID: 33136116; PMCID: PMC7607488.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansPHPublic Health
    10. Is the United States Ready for Event-Driven Human Immunodeficiency Virus Preexposure Prophylaxis? Clin Infect Dis. 2020 07 11; 71(2):256-258. Cohen SE, Kelley CF. PMID: 31436811.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    11. Quarterly screening optimizes detection of sexually transmitted infections when prescribing HIV preexposure prophylaxis. AIDS. 2020 07 01; 34(8):1181-1186. Tang EC, Vittinghoff E, Philip SS, Doblecki-Lewis S, Bacon O, Chege W, Coleman ME, Elion R, Buchbinder S, Kolber MA, Liu AY, Cohen SE. PMID: 32205724.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansPHPublic Health
    12. Phylodynamic Analysis Complements Partner Services by Identifying Acute and Unreported HIV Transmission. Viruses. 2020 01 27; 12(2). Campbell EM, Patala A, Shankar A, Li JF, Johnson JA, Westheimer E, Gay CL, Cohen SE, Switzer WM, Peters PJ. PMID: 32012700; PMCID: PMC7077189.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCellsPHPublic Health
    13. HIV Seroconversion in the Era of Pharmacologic Prevention: A Case-Control Study at a San Francisco STD Clinic. J Acquir Immune Defic Syndr. 2019 10 01; 82(2):159-165. Johnson KA, Hessol NA, Kohn R, Nguyen TQ, Mara ES, Hsu L, Scheer S, Cohen SE. PMID: 31192823.
      View in: PubMed   Mentions: Translation:HumansPHPublic Health
    14. Implementation of pre-exposure prophylaxis at a community pharmacy through a collaborative practice agreement with San Francisco Department of Public Health. J Am Pharm Assoc (2003). 2020 Jan - Feb; 60(1):138-144. Lopez MI, Cocohoba J, Cohen SE, Trainor N, Levy MM, Dong BJ. PMID: 31405804.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansPHPublic Health
    15. Evaluating the Impact of Housing Status on Gonorrhea and Chlamydia Screening in an HIV Primary Care Setting. Sex Transm Dis. 2019 03; 46(3):153-158. Clemenzi-Allen AA, Hartogensis W, Cohen SE, Gandhi M, Geng E, Christopoulos K. PMID: 30383619.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCellsPHPublic Health
    16. Performance evaluation of the Bio-Rad Geenius HIV 1/2 supplemental assay. J Clin Virol. 2019 02; 111:24-28. Luo W, Sullivan V, Smith T, Peters PJ, Gay C, Westheimer E, Cohen SE, Owen SM, Masciotra S. PMID: 30594702.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    17. Acquisition of tenofovir-susceptible, emtricitabine-resistant HIV despite high adherence to daily pre-exposure prophylaxis: a case report. Lancet HIV. 2018 Nov 29. Cohen SE, Sachdev D, Lee SA, Scheer S, Bacon O, Chen MJ, Okochi H, Anderson PL, Kearney MF, Coffey S, Scott H, Grant RM, Havlir D, Gandhi M. PMID: 30503324; PMCID: PMC6541554.
      View in: PubMed   Mentions: 15     Fields:    
    18. Patterns and Correlates of Participant Retention in a Multi-City Pre-Exposure Prophylaxis Demonstration Project. J Acquir Immune Defic Syndr. 2018 09 01; 79(1):62-69. Doblecki-Lewis S, Liu AY, Feaster DJ, Cohen SE, Elion R, Bacon O, Coleman M, Cardenas G, Kolber MA. PMID: 29771790; PMCID: PMC6092210.
      View in: PubMed   Mentions: 6  Translation:HumansPHPublic Health
    19. Historical and Current Trends in the Epidemiology of Early Syphilis in San Francisco, 1955 to 2016. Sex Transm Dis. 2018 09; 45(9S Suppl 1):S55-S62. Nguyen TQ, Kohn RP, Ng RC, Philip SS, Cohen SE. PMID: 29787467; PMCID: PMC6993931.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansPHPublic Health
    20. Changes in Kidney Function Associated With Daily Tenofovir Disoproxil Fumarate/Emtricitabine for HIV Preexposure Prophylaxis Use in the United States Demonstration Project. J Acquir Immune Defic Syndr. 2018 02 01; 77(2):193-198. Tang EC, Vittinghoff E, Anderson PL, Cohen SE, Doblecki-Lewis S, Bacon O, Coleman ME, Buchbinder SP, Chege W, Kolber MA, Elion R, Shlipak M, Liu AY. PMID: 28991887; PMCID: PMC5762266.
      View in: PubMed   Mentions: 13  Translation:HumansPHPublic Health
    21. Body/Selves and Beyond: Men's Narratives of Sexual Behavior on PrEP. Med Anthropol. 2018 07; 37(5):387-400. Hughes SD, Sheon N, Andrew EVW, Cohen SE, Doblecki-Lewis S, Liu AY. PMID: 29257911; PMCID: PMC6136979.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansPHPublic Health
    22. HIV-1 persistence following extremely early initiation of antiretroviral therapy (ART) during acute HIV-1 infection: An observational study. PLoS Med. 2017 Nov; 14(11):e1002417. Henrich TJ, Hatano H, Bacon O, Hogan LE, Rutishauser R, Hill A, Kearney MF, Anderson EM, Buchbinder SP, Cohen SE, Abdel-Mohsen M, Pohlmeyer CW, Fromentin R, Hoh R, Liu AY, McCune JM, Spindler J, Metcalf-Pate K, Hobbs KS, Thanh C, Gibson EA, Kuritzkes DR, Siliciano RF, Price RW, Richman DD, Chomont N, Siliciano JD, Mellors JW, Yukl SA, Blankson JN, Liegler T, Deeks SG. PMID: 29112956; PMCID: PMC5675377.
      View in: PubMed   Mentions: 87     Fields:    Translation:HumansCellsPHPublic Health
    23. Hair levels of preexposure prophylaxis drugs measure adherence and are associated with renal decline among men/transwomen. AIDS. 2017 Oct 23; 31(16):2245-2251. Gandhi M, Murnane PM, Bacchetti P, Elion R, Kolber MA, Cohen SE, Horng H, Louie A, Kuncze K, Koss CA, Anderson PL, Buchbinder S, Liu A. PMID: 28832411; PMCID: PMC5633521.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansPHPublic Health
    24. Top Questions in ID: Pre-exposure Prophylaxis for HIV. Open Forum Infect Dis. 2017; 4(4):ofx185. Krakower DS, Cohen SE, Mayer KH. PMID: 29026872; PMCID: PMC5632308.
      View in: PubMed   Mentions:
    25. Healthcare Access and PrEP Continuation in San Francisco and Miami After the US PrEP Demo Project. J Acquir Immune Defic Syndr. 2017 04 15; 74(5):531-538. Doblecki-Lewis S, Liu A, Feaster D, Cohen SE, Cardenas G, Bacon O, Andrew E, Kolber MA. PMID: 27861236; PMCID: PMC5340616.
      View in: PubMed   Mentions: 27  Translation:HumansPHPublic Health
    26. Real-world performance of the new US HIV testing algorithm in medical settings. J Clin Virol. 2017 06; 91:73-78. Marson KG, Marlin R, Pham P, Cohen SE, Jones D, Roemer M, Peters PJ, Haller B, Pilcher CD. PMID: 28434809; PMCID: PMC5716467.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansPHPublic Health
    27. Performance evaluation of the FDA-approved Determine™ HIV-1/2 Ag/Ab Combo assay using plasma and whole blood specimens. J Clin Virol. 2017 06; 91:95-100. Masciotra S, Luo W, Westheimer E, Cohen SE, Gay CL, Hall L, Pan Y, Peters PJ, Owen SM. PMID: 28372891.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCellsPHPublic Health
    28. Performance evaluation of the point-of-care INSTI™ HIV-1/2 antibody test in early and established HIV infections. J Clin Virol. 2017 06; 91:90-94. Adams S, Luo W, Wesolowski L, Cohen SE, Peters PJ, Owen SM, Masciotra S. PMID: 28372890.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCellsPHPublic Health
    29. Diagnosing acute HIV infection: The performance of quantitative HIV-1 RNA testing (viral load) in the 2014 laboratory testing algorithm. J Clin Virol. 2017 08; 93:85-86. Wu H, Cohen SE, Westheimer E, Gay CL, Hall L, Rose C, Hightow-Weidman LB, Gose S, Fu J, Peters PJ. PMID: 28342746.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    30. Brief Report: Informing Strategies to Build PrEP Capacity Among San Francisco Bay Area Clinicians. J Acquir Immune Defic Syndr. 2017 Feb 01; 74(2):175-179. Bacon O, Gonzalez R, Andrew E, Potter MB, Iñiguez JR, Cohen SE, Liu AY, Fuchs JD. PMID: 27654813; PMCID: PMC5233589.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansPHPublic Health
    31. Sexual Behavior, Risk Compensation, and HIV Prevention Strategies Among Participants in the San Francisco PrEP Demonstration Project: A Qualitative Analysis of Counseling Notes. AIDS Behav. 2016 07; 20(7):1461-9. Carlo Hojilla J, Koester KA, Cohen SE, Buchbinder S, Ladzekpo D, Matheson T, Liu AY. PMID: 25835463; PMCID: PMC4592687.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansPHPublic Health
    32. Successful Implementation of HIV Preexposure Prophylaxis: Lessons Learned From Three Clinical Settings. Curr HIV/AIDS Rep. 2016 Apr; 13(2):116-24. Marcus JL, Volk JE, Pinder J, Liu AY, Bacon O, Hare CB, Cohen SE. PMID: 26898645.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansPHPublic Health
    33. Preexposure Prophylaxis for HIV Infection Integrated With Municipal- and Community-Based Sexual Health Services. JAMA Intern Med. 2016 Jan; 176(1):75-84. Liu AY, Cohen SE, Vittinghoff E, Anderson PL, Doblecki-Lewis S, Bacon O, Chege W, Postle BS, Matheson T, Amico KR, Liegler T, Rawlings MK, Trainor N, Blue RW, Estrada Y, Coleman ME, Cardenas G, Feaster DJ, Grant R, Philip SS, Elion R, Buchbinder S, Kolber MA. PMID: 26571482; PMCID: PMC5042323.
      View in: PubMed   Mentions: 232     Fields:    Translation:HumansPHPublic HealthCTClinical Trials
    34. Lymphogranuloma Venereum 2015: Clinical Presentation, Diagnosis, and Treatment. Clin Infect Dis. 2015 Dec 15; 61 Suppl 8:S865-73. Stoner BP, Cohen SE. PMID: 26602624.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    35. A Cluster of Ocular Syphilis Cases - Seattle, Washington, and San Francisco, California, 2014-2015. MMWR Morb Mortal Wkly Rep. 2015 Oct 16; 64(40):1150-1. Woolston S, Cohen SE, Fanfair RN, Lewis SC, Marra CM, Golden MR. PMID: 26469141; PMCID: PMC4894317.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    36. Authors' Reply: Race and the Public Health Impact Potential of Pre-Exposure Prophylaxis in the United States. J Acquir Immune Defic Syndr. 2015 Sep 01; 70(1):e33-5. Cohen SE, Vittinghoff E, Doblecki-Lewis S, Coleman M, Bacon O, Elion R, Kolber MA, Buchbinder S, Liu AY. PMID: 26049284; PMCID: PMC4558271.
      View in: PubMed   Mentions: 4  Translation:HumansPHPublic Health
    37. High interest in preexposure prophylaxis among men who have sex with men at risk for HIV infection: baseline data from the US PrEP demonstration project. J Acquir Immune Defic Syndr. 2015 Apr 01; 68(4):439-48. Cohen SE, Vittinghoff E, Bacon O, Doblecki-Lewis S, Postle BS, Feaster DJ, Matheson T, Trainor N, Blue RW, Estrada Y, Coleman ME, Elion R, Castro JG, Chege W, Philip SS, Buchbinder S, Kolber MA, Liu AY. PMID: 25501614; PMCID: PMC4334721.
      View in: PubMed   Mentions: 88  Translation:HumansPHPublic Health
    38. Syphilis transmission: a review of the current evidence. Sex Health. 2015 Apr; 12(2):103-9. Stoltey JE, Cohen SE. PMID: 25702043; PMCID: PMC5973824.
      View in: PubMed   Mentions: 10     Fields:    
    39. Oral pre-exposure prophylaxis (PrEP) for prevention of HIV in serodiscordant heterosexual couples in the United States: opportunities and challenges. AIDS Patient Care STDS. 2014 Sep; 28(9):462-74. McMahon JM, Myers JE, Kurth AE, Cohen SE, Mannheimer SB, Simmons J, Pouget ER, Trabold N, Haberer JE. PMID: 25045996; PMCID: PMC4135325.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansPHPublic Health
    40. Identifying syphilis risk networks through venue attendance in San Francisco. Sex Transm Dis. 2014 May; 41(5):333-7. Stephens SC, Fann CK, Strona FV, Wolf W, Cohen SE, Philip SS, Bernstein KT. PMID: 24722390; PMCID: PMC6830060.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansPHPublic Health
    41. Lymphogranuloma venereum causing a persistent genital ulcer. Sex Transm Dis. 2014 Apr; 41(4):280-2. Marcotte T, Lee Y, Pandori M, Jain V, Cohen SE. PMID: 24622642.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    42. Insurance among patients seeking care at a municipal sexually transmitted disease clinic: implications for health care reform in the United States. Sex Transm Dis. 2014 Apr; 41(4):227-32. Stephens SC, Cohen SE, Philip SS, Bernstein KT. PMID: 24622632.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    43. Syphilis in the modern era: an update for physicians. Infect Dis Clin North Am. 2013 Dec; 27(4):705-22. Cohen SE, Klausner JD, Engelman J, Philip S. PMID: 24275265.
      View in: PubMed   Mentions: 20     Fields:    Translation:Humans
    44. Linkage to HIV care in San Francisco: implications of measure selection. J Acquir Immune Defic Syndr. 2013 Nov 01; 64 Suppl 1:S27-32. Das M, Christopoulos KA, Geckeler D, Huriaux E, Cohen SE, Philip S, Shade S, Moss NJ, Morin SF, Charlebois ED. PMID: 24126446; PMCID: PMC4078743.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    45. Preparing for HIV pre-exposure prophylaxis: lessons learned from post-exposure prophylaxis. Am J Prev Med. 2013 Jan; 44(1 Suppl 2):S80-5. Cohen SE, Liu AY, Bernstein KT, Philip S. PMID: 23253767; PMCID: PMC3733170.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansPHPublic Health
    46. Injection behaviors among injection drug users in treatment: the role of hepatitis C awareness. Addict Behav. 2012 Apr; 37(4):552-5. Korthuis PT, Feaster DJ, Gomez ZL, Das M, Tross S, Wiest K, Douaihy A, Mandler RN, Sorensen JL, Colfax G, McCarty D, Cohen SE, Penn PE, Lape D, Metsch LR. PMID: 22209655; PMCID: PMC3288438.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansPHPublic Health
    47. Repeat syphilis among men who have sex with men in California, 2002-2006: implications for syphilis elimination efforts. Am J Public Health. 2012 Jan; 102(1):e1-8. Cohen SE, Chew Ng RA, Katz KA, Bernstein KT, Samuel MC, Kerndt PR, Bolan G. PMID: 22095364; PMCID: PMC3490561.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansPHPublic Health
    48. Is diabetes mellitus an independent risk factor for colon cancer and rectal cancer? Am J Gastroenterol. 2011 Nov; 106(11):1911-21; quiz 1922. Yuhara H, Steinmaus C, Cohen SE, Corley DA, Tei Y, Buffler PA. PMID: 21912438; PMCID: PMC3741453.
      View in: PubMed   Mentions: 120     Fields:    Translation:Humans
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