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    Wallace Marshall, PhD

    SchoolUCSF School of Medicine
    DepartmentBiochemistry and Biophysics
    Address600 16th Street
    San Francisco CA 94158

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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Ludington WB, Ishikawa H, Serebrenik YV, Ritter A, Hernandez-Lopez RA, Gunzenhauser J, Kannegaard E, Marshall WF. A systematic comparison of mathematical models for inherent measurement of ciliary length: how a cell can measure length and volume. Biophys J. 2015 Mar 24; 108(6):1361-79.
        View in: PubMed
      2. Ishikawa H, Marshall WF. Efficient live fluorescence imaging of intraflagellar transport in mammalian primary cilia. Methods Cell Biol. 2015; 127:189-201.
        View in: PubMed
      3. Slabodnick MM, Marshall WF. Stentor coeruleus. Curr Biol. 2014 Sep 8; 24(17):R783-4.
        View in: PubMed
      4. Avasthi P, Onishi M, Karpiak J, Yamamoto R, Mackinder L, Jonikas MC, Sale WS, Shoichet B, Pringle JR, Marshall WF. Actin is required for IFT regulation in Chlamydomonas reinhardtii. Curr Biol. 2014 Sep 8; 24(17):2025-32.
        View in: PubMed PMC4160380
      5. Kannegaard E, Rego EH, Schuck S, Feldman JL, Marshall WF. Quantitative analysis and modeling of katanin function in flagellar length control. Mol Biol Cell. 2014 Nov 5; 25(22):3686-98.
        View in: PubMed PMC4230626
      6. Slabodnick MM, Ruby JG, Dunn JG, Feldman JL, DeRisi JL, Marshall WF. The kinase regulator mob1 acts as a patterning protein for stentor morphogenesis. PLoS Biol. 2014 May; 12(5):e1001861.
        View in: PubMed PMC4019465
      7. Marshall WF. The Golgi is a measuring cup. Dev Cell. 2014 May 12; 29(3):259-60.
        View in: PubMed PMC4085746
      8. Chan YH, Marshall WF. Organelle size scaling of the budding yeast vacuole is tuned by membrane trafficking rates. Biophys J. 2014 May 6; 106(9):1986-96.
        View in: PubMed PMC4017318
      9. Ishikawa H, Ide T, Yagi T, Jiang X, Hirono M, Sasaki H, Yanagisawa H, Wemmer KA, Stainier DY, Qin H, Kamiya R, Marshall WF. Correction: TTC26/DYF13 is an intraflagellar transport protein required for transport of motility-related proteins into flagella. Elife. 2014; 3:e02897.
        View in: PubMed PMC3971414
      10. Yanagisawa HA, Mathis G, Oda T, Hirono M, Richey EA, Ishikawa H, Marshall WF, Kikkawa M, Qin H. FAP20 is an inner junction protein of doublet microtubules essential for both the planar asymmetrical waveform and stability of flagella in Chlamydomonas. Mol Biol Cell. 2014 May; 25(9):1472-83.
        View in: PubMed PMC4004596
      11. Ishikawa H, Ide T, Yagi T, Jiang X, Hirono M, Sasaki H, Yanagisawa H, Wemmer KA, Stainier DY, Qin H, Kamiya R, Marshall WF. TTC26/DYF13 is an intraflagellar transport protein required for transport of motility-related proteins into flagella. Elife. 2014; 3:e01566.
        View in: PubMed PMC3936282
      12. Slabodnick M, Prevo B, Gross P, Sheung J, Marshall W. Visualizing cytoplasmic flow during single-cell wound healing in Stentor coeruleus. J Vis Exp. 2013; (82):e50848.
        View in: PubMed PMC4110943
      13. Avasthi P, Marshall WF. Ciliary regulation: disassembly takes the spotlight. Curr Biol. 2013 Nov 18; 23(22):R1001-3.
        View in: PubMed
      14. Marshall WF. Differential geometry meets the cell. Cell. 2013 Jul 18; 154(2):265-6.
        View in: PubMed
      15. Shih SM, Engel BD, Kocabas F, Bilyard T, Gennerich A, Marshall WF, Yildiz A. Intraflagellar transport drives flagellar surface motility. Elife. 2013; 2:e00744.
        View in: PubMed PMC3679542
      16. Avasthi P, Marshall W. Ciliary secretion: switching the cellular antenna to 'transmit'. Curr Biol. 2013 Jun 3; 23(11):R471-3.
        View in: PubMed
      17. Ludington WB, Wemmer KA, Lechtreck KF, Witman GB, Marshall WF. Avalanche-like behavior in ciliary import. Proc Natl Acad Sci U S A. 2013 Mar 5; 110(10):3925-30.
        View in: PubMed PMC3593837
      18. Marshall WF. Methods in Enzymology. Cilia, part A. Preface. Methods Enzymol. 2013; 524:xv-xvii.
        View in: PubMed
      19. Rompolas P, Azimzadeh J, Marshall WF, King SM. Analysis of ciliary assembly and function in planaria. Methods Enzymol. 2013; 525:245-64.
        View in: PubMed
      20. Ishikawa H, Marshall WF. Isolation of mammalian primary cilia. Methods Enzymol. 2013; 525:311-25.
        View in: PubMed
      21. Avasthi P, Marshall WF. Chemical screening methods for flagellar phenotypes in Chlamydomonas. Methods Enzymol. 2013; 525:351-69.
        View in: PubMed
      22. Marshall WF. Methods in Enzymology. Cilia, part B. Preface. Methods Enzymol. 2013; 525:xvii-xix.
        View in: PubMed
      23. Marshall WF, Young KD, Swaffer M, Wood E, Nurse P, Kimura A, Frankel J, Wallingford J, Walbot V, Qu X, Roeder AH. What determines cell size? BMC Biol. 2012; 10:101.
        View in: PubMed PMC3522064
      24. Apte ZS, Marshall WF. Statistical method for comparing the level of intracellular organization between cells. Proc Natl Acad Sci U S A. 2013 Mar 12; 110(11):E1006-15.
        View in: PubMed PMC3600484
      25. Rafelski SM, Viana MP, Zhang Y, Chan YH, Thorn KS, Yam P, Fung JC, Li H, Costa Lda F, Marshall WF. Mitochondrial network size scaling in budding yeast. Science. 2012 Nov 9; 338(6108):822-4.
        View in: PubMed PMC3602416
      26. Lim WA, Alvania R, Marshall WF. Cell biology 2.0. Trends Cell Biol. 2012 Dec; 22(12):611-2.
        View in: PubMed
      27. Tang N, Marshall WF. Centrosome positioning in vertebrate development. J Cell Sci. 2012 Nov 1; 125(Pt 21):4951-61.
        View in: PubMed PMC3533386
      28. Ludington WB, Shi LZ, Zhu Q, Berns MW, Marshall WF. Organelle size equalization by a constitutive process. Curr Biol. 2012 Nov 20; 22(22):2173-9.
        View in: PubMed PMC3505248
      29. Engel BD, Ishikawa H, Wemmer KA, Geimer S, Wakabayashi K, Hirono M, Craige B, Pazour GJ, Witman GB, Kamiya R, Marshall WF. The role of retrograde intraflagellar transport in flagellar assembly, maintenance, and function. J Cell Biol. 2012 Oct 1; 199(1):151-67.
        View in: PubMed PMC3461521
      30. Marshall WF. Centriole asymmetry determines algal cell geometry. Curr Opin Plant Biol. 2012 Dec; 15(6):632-7.
        View in: PubMed PMC3518594
      31. Chan YH, Marshall WF. How cells know the size of their organelles. Science. 2012 Sep 7; 337(6099):1186-9.
        View in: PubMed PMC3625396
      32. Marshall WF. Organelle size control systems: from cell geometry to organelle-directed medicine. Bioessays. 2012 Sep; 34(9):721-4.
        View in: PubMed PMC3670685
      33. Avasthi P, Marley A, Lin H, Gregori-Puigjane E, Shoichet BK, von Zastrow M, Marshall WF. A chemical screen identifies class a g-protein coupled receptors as regulators of cilia. ACS Chem Biol. 2012 May 18; 7(5):911-9.
        View in: PubMed PMC3356477
      34. Ishikawa H, Thompson J, Yates JR, Marshall WF. Proteomic analysis of mammalian primary cilia. Curr Biol. 2012 Mar 6; 22(5):414-9.
        View in: PubMed PMC3298568
      35. Azimzadeh J, Wong ML, Downhour DM, Sánchez Alvarado A, Marshall WF. Centrosome loss in the evolution of planarians. Science. 2012 Jan 27; 335(6067):461-3.
        View in: PubMed PMC3347778
      36. Avasthi P, Marshall WF. Stages of ciliogenesis and regulation of ciliary length. Differentiation. 2012 Feb; 83(2):S30-42.
        View in: PubMed PMC3269565
      37. Li S, Fernandez JJ, Marshall WF, Agard DA. Three-dimensional structure of basal body triplet revealed by electron cryo-tomography. EMBO J. 2012 Feb 1; 31(3):552-62.
        View in: PubMed PMC3273388
      38. Yang Y, Sage TL, Liu Y, Ahmad TR, Marshall WF, Shiu SH, Froehlich JE, Imre KM, Osteryoung KW. CLUMPED CHLOROPLASTS 1 is required for plastid separation in Arabidopsis. Proc Natl Acad Sci U S A. 2011 Nov 8; 108(45):18530-5.
        View in: PubMed PMC3215037
      39. Marshall WF. Origins of cellular geometry. BMC Biol. 2011; 9:57.
        View in: PubMed PMC3199588
      40. Marshall WF. Centrosome size: scaling without measuring. Curr Biol. 2011 Aug 9; 21(15):R594-6.
        View in: PubMed
      41. Tang N, Marshall WF, McMahon M, Metzger RJ, Martin GR. Control of mitotic spindle angle by the RAS-regulated ERK1/2 pathway determines lung tube shape. Science. 2011 Jul 15; 333(6040):342-5.
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      42. Ishikawa H, Marshall WF. Ciliogenesis: building the cell's antenna. Nat Rev Mol Cell Biol. 2011 Apr; 12(4):222-34.
        View in: PubMed
      43. Rafelski SM, Keller LC, Alberts JB, Marshall WF. Apparent diffusive motion of centrin foci in living cells: implications for diffusion-based motion in centriole duplication. Phys Biol. 2011 Apr; 8(2):026010.
        View in: PubMed PMC3132559
      44. Engel BD, Ishikawa H, Feldman JL, Wilson CW, Chuang PT, Snedecor J, Williams J, Sun Z, Marshall WF. A cell-based screen for inhibitors of flagella-driven motility in Chlamydomonas reveals a novel modulator of ciliary length and retrograde actin flow. Cytoskeleton (Hoboken). 2011 Mar; 68(3):188-203.
        View in: PubMed
      45. Yang Y, Cochran DA, Gargano MD, King I, Samhat NK, Burger BP, Sabourin KR, Hou Y, Awata J, Parry DA, Marshall WF, Witman GB, Lu X. Regulation of flagellar motility by the conserved flagellar protein CG34110/Ccdc135/FAP50. Mol Biol Cell. 2011 Apr; 22(7):976-87.
        View in: PubMed PMC3069022
      46. Azimzadeh J, Marshall WF. Building the centriole. Curr Biol. 2010 Sep 28; 20(18):R816-25.
        View in: PubMed PMC2956124
      47. Keller LC, Wemmer KA, Marshall WF. Influence of centriole number on mitotic spindle length and symmetry. Cytoskeleton (Hoboken). 2010 Aug; 67(8):504-18.
        View in: PubMed PMC2923695
      48. Chan YH, Marshall WF. Scaling properties of cell and organelle size. Organogenesis. 2010 Apr-Jun; 6(2):88-96.
        View in: PubMed PMC2901812
      49. Marshall WF. Cilia self-organize in response to planar cell polarity and flow. Nat Cell Biol. 2010 Apr; 12(4):314-5.
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      50. Engel BD, Lechtreck KF, Sakai T, Ikebe M, Witman GB, Marshall WF. Total internal reflection fluorescence (TIRF) microscopy of Chlamydomonas flagella. Methods Cell Biol. 2009; 93:157-77.
        View in: PubMed PMC3686088
      51. Engel BD, Ludington WB, Marshall WF. Intraflagellar transport particle size scales inversely with flagellar length: revisiting the balance-point length control model. J Cell Biol. 2009 Oct 5; 187(1):81-9.
        View in: PubMed PMC2762100
      52. Feldman JL, Marshall WF. ASQ2 encodes a TBCC-like protein required for mother-daughter centriole linkage and mitotic spindle orientation. Curr Biol. 2009 Jul 28; 19(14):1238-43.
        View in: PubMed PMC2764367
      53. Marshall WF. Quantitative high-throughput assays for flagella-based motility in chlamydomonas using plate-well image analysis and transmission correlation spectroscopy. J Biomol Screen. 2009 Feb; 14(2):133-41.
        View in: PubMed
      54. Marshall WF. Centriole evolution. Curr Opin Cell Biol. 2009 Feb; 21(1):14-9.
        View in: PubMed PMC2835302
      55. Keller LC, Geimer S, Romijn E, Yates J, Zamora I, Marshall WF. Molecular architecture of the centriole proteome: the conserved WD40 domain protein POC1 is required for centriole duplication and length control. Mol Biol Cell. 2009 Feb; 20(4):1150-66.
        View in: PubMed PMC2642750
      56. Rasi MQ, Parker JD, Feldman JL, Marshall WF, Quarmby LM. Katanin knockdown supports a role for microtubule severing in release of basal bodies before mitosis in Chlamydomonas. Mol Biol Cell. 2009 Jan; 20(1):379-88.
        View in: PubMed PMC2613114
      57. Marshall WF. Modeling recursive RNA interference. PLoS Comput Biol. 2008; 4(9):e1000183.
        View in: PubMed PMC2522276
      58. Marshall WF. Controlling size within cells. Semin Cell Dev Biol. 2008 Dec; 19(6):479.
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      59. Rafelski SM, Marshall WF. Building the cell: design principles of cellular architecture. Nat Rev Mol Cell Biol. 2008 Aug; 9(8):593-602.
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      60. Marshall WF. Engineering design principles for organelle size control systems. Semin Cell Dev Biol. 2008 Dec; 19(6):520-4.
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      61. Marshall WF, Kintner C. Cilia orientation and the fluid mechanics of development. Curr Opin Cell Biol. 2008 Feb; 20(1):48-52.
        View in: PubMed PMC2720100
      62. Marshall WF. The cell biological basis of ciliary disease. J Cell Biol. 2008 Jan 14; 180(1):17-21.
        View in: PubMed PMC2213625
      63. Marshall WF. Basal bodies platforms for building cilia. Curr Top Dev Biol. 2008; 85:1-22.
        View in: PubMed
      64. Keller LC, Marshall WF. Isolation and proteomic analysis of Chlamydomonas centrioles. Methods Mol Biol. 2008; 432:289-300.
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      65. Marshall WF. Use of transcriptomic data to support organelle proteomic analysis. Methods Mol Biol. 2008; 432:403-14.
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      66. Marshall WF. Centriole assembly: the origin of nine-ness. Curr Biol. 2007 Dec 18; 17(24):R1057-9.
        View in: PubMed
      67. Marshall WF. Don'T blink: observing the ultra-fast contraction of spasmonemes. Biophys J. 2008 Jan 1; 94(1):4-5.
        View in: PubMed PMC2134872
      68. Merchant SS, Prochnik SE, Vallon O, Harris EH, Karpowicz SJ, Witman GB, Terry A, Salamov A, Fritz-Laylin LK, Maréchal-Drouard L, Marshall WF, Qu LH, Nelson DR, Sanderfoot AA, Spalding MH, Kapitonov VV, Ren Q, Ferris P, Lindquist E, Shapiro H, Lucas SM, Grimwood J, Schmutz J, Cardol P, Cerutti H, Chanfreau G, Chen CL, Cognat V, Croft MT, Dent R, Dutcher S, Fernández E, Fukuzawa H, González-Ballester D, González-Halphen D, Hallmann A, Hanikenne M, Hippler M, Inwood W, Jabbari K, Kalanon M, Kuras R, Lefebvre PA, Lemaire SD, Lobanov AV, Lohr M, Manuell A, Meier I, Mets L, Mittag M, Mittelmeier T, Moroney JV, Moseley J, Napoli C, Nedelcu AM, Niyogi K, Novoselov SV, Paulsen IT, Pazour G, Purton S, Ral JP, Riaño-Pachón DM, Riekhof W, Rymarquis L, Schroda M, Stern D, Umen J, Willows R, Wilson N, Zimmer SL, Allmer J, Balk J, Bisova K, Chen CJ, Elias M, Gendler K, Hauser C, Lamb MR, Ledford H, Long JC, Minagawa J, Page MD, Pan J, Pootakham W, Roje S, Rose A, Stahlberg E, Terauchi AM, Yang P, Ball S, Bowler C, Dieckmann CL, Gladyshev VN, Green P, Jorgensen R, Mayfield S, Mueller-Roeber B, Rajamani S, Sayre RT, Brokstein P, Dubchak I, Goodstein D, Hornick L, Huang YW, Jhaveri J, Luo Y, Martínez D, Ngau WC, Otillar B, Poliakov A, Porter A, Szajkowski L, Werner G, Zhou K, Grigoriev IV, Rokhsar DS, Grossman AR. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science. 2007 Oct 12; 318(5848):245-50.
        View in: PubMed PMC2875087
      69. Feldman JL, Geimer S, Marshall WF. The mother centriole plays an instructive role in defining cell geometry. PLoS Biol. 2007 Jun; 5(6):e149.
        View in: PubMed PMC1872036
      70. Marshall WF. Stability and robustness of an organelle number control system: modeling and measuring homeostatic regulation of centriole abundance. Biophys J. 2007 Sep 1; 93(5):1818-33.
        View in: PubMed PMC1948063
      71. Marshall WF. What is the function of centrioles? J Cell Biochem. 2007 Mar 1; 100(4):916-22.
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      72. Wemmer KA, Marshall WF. Flagellar length control in chlamydomonas--paradigm for organelle size regulation. Int Rev Cytol. 2007; 260:175-212.
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      73. Mogilner A, Wollman R, Marshall WF. Quantitative modeling in cell biology: what is it good for? Dev Cell. 2006 Sep; 11(3):279-87.
        View in: PubMed
      74. Kennedy TE, Wang H, Marshall W, Tessier-Lavigne M. Axon guidance by diffusible chemoattractants: a gradient of netrin protein in the developing spinal cord. J Neurosci. 2006 Aug 23; 26(34):8866-74.
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      75. Marshall WF, Nonaka S. Cilia: tuning in to the cell's antenna. Curr Biol. 2006 Aug 8; 16(15):R604-14.
        View in: PubMed
      76. Nonaka S, Yoshiba S, Watanabe D, Ikeuchi S, Goto T, Marshall WF, Hamada H. De novo formation of left-right asymmetry by posterior tilt of nodal cilia. PLoS Biol. 2005 Aug; 3(8):e268.
        View in: PubMed PMC1180513
      77. Keller LC, Romijn EP, Zamora I, Yates JR, Marshall WF. Proteomic analysis of isolated chlamydomonas centrioles reveals orthologs of ciliary-disease genes. Curr Biol. 2005 Jun 21; 15(12):1090-8.
        View in: PubMed
      78. Zamora I, Marshall WF. A mutation in the centriole-associated protein centrin causes genomic instability via increased chromosome loss in Chlamydomonas reinhardtii. BMC Biol. 2005; 3:15.
        View in: PubMed PMC1174865
      79. Stolc V, Samanta MP, Tongprasit W, Marshall WF. Genome-wide transcriptional analysis of flagellar regeneration in Chlamydomonas reinhardtii identifies orthologs of ciliary disease genes. Proc Natl Acad Sci U S A. 2005 Mar 8; 102(10):3703-7.
        View in: PubMed PMC553310
      80. Wemmer KA, Marshall WF. Flagellar motility: all pull together. Curr Biol. 2004 Dec 14; 14(23):R992-3.
        View in: PubMed
      81. Marshall WF. Human cilia proteome contains homolog of zebrafish polycystic kidney disease gene qilin. Curr Biol. 2004 Nov 9; 14(21):R913-4.
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      82. Marshall WF, Qin H, Rodrigo Brenni M, Rosenbaum JL. Flagellar length control system: testing a simple model based on intraflagellar transport and turnover. Mol Biol Cell. 2005 Jan; 16(1):270-8.
        View in: PubMed PMC539171
      83. Zamora I, Feldman JL, Marshall WF. PCR-based assay for mating type and diploidy in Chlamydomonas. Biotechniques. 2004 Oct; 37(4):534-6.
        View in: PubMed
      84. Feldman JL, Marshall WF. Centrioles: bad to be bald? Curr Biol. 2004 Aug 24; 14(16):R659-60.
        View in: PubMed
      85. Marshall WF. Cellular length control systems. Annu Rev Cell Dev Biol. 2004; 20:677-93.
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      86. Marshall WF. Gene expression and nuclear architecture during development and differentiation. Mech Dev. 2003 Nov; 120(11):1217-30.
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      87. Marshall W. From cells on up: Symposium on Cell Biology of Development and Disease. EMBO Rep. 2003 Jun; 4(6):556-9.
        View in: PubMed PMC1319209
      88. Marshall WF, Rosenbaum JL. Tubulin superfamily: giving birth to triplets. Curr Biol. 2003 Jan 21; 13(2):R55-6.
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      89. Marshall W. Size control in dynamic organelles. Trends Cell Biol. 2002 Sep; 12(9):414-9.
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      90. Marshall WF. Loss of checkpoint proteins: an occupational hazard. Trends Cell Biol. 2002 Apr; 12(4):160.
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      91. Marshall WF. Order and disorder in the nucleus. Curr Biol. 2002 Mar 5; 12(5):R185-92.
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      92. Marshall WF. Polar wind left flapping in the breeze? Trends Cell Biol. 2002 Jan; 12(1):9.
        View in: PubMed
      93. Marshall WF, Marko JF, Agard DA, Sedat JW. Chromosome elasticity and mitotic polar ejection force measured in living Drosophila embryos by four-dimensional microscopy-based motion analysis. Curr Biol. 2001 Apr 17; 11(8):569-78.
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      94. Fung JC, Marshall WF, Dernburg A, Agard DA, Sedat JW. Homologous chromosome pairing in Drosophila melanogaster proceeds through multiple independent initiations. J Cell Biol. 1998 Apr 6; 141(1):5-20.
        View in: PubMed PMC2132734
      95. Marshall WF, Straight A, Marko JF, Swedlow J, Dernburg A, Belmont A, Murray AW, Agard DA, Sedat JW. Interphase chromosomes undergo constrained diffusional motion in living cells. Curr Biol. 1997 Dec 1; 7(12):930-9.
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      96. Straight AF, Marshall WF, Sedat JW, Murray AW. Mitosis in living budding yeast: anaphase A but no metaphase plate. Science. 1997 Jul 25; 277(5325):574-8.
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      97. Nunnari J, Marshall WF, Straight A, Murray A, Sedat JW, Walter P. Mitochondrial transmission during mating in Saccharomyces cerevisiae is determined by mitochondrial fusion and fission and the intramitochondrial segregation of mitochondrial DNA. Mol Biol Cell. 1997 Jul; 8(7):1233-42.
        View in: PubMed PMC276149
      98. Oegema K, Marshall WF, Sedat JW, Alberts BM. Two proteins that cycle asynchronously between centrosomes and nuclear structures: Drosophila CP60 and CP190. J Cell Sci. 1997 Jul; 110 ( Pt 14):1573-83.
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      99. Marshall WF, Fung JC, Sedat JW. Deconstructing the nucleus: global architecture from local interactions. Curr Opin Genet Dev. 1997 Apr; 7(2):259-63.
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      100. Dernburg AF, Broman KW, Fung JC, Marshall WF, Philips J, Agard DA, Sedat JW. Perturbation of nuclear architecture by long-distance chromosome interactions. Cell. 1996 May 31; 85(5):745-59.
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      101. Marshall WF, Dernburg AF, Harmon B, Agard DA, Sedat JW. Specific interactions of chromatin with the nuclear envelope: positional determination within the nucleus in Drosophila melanogaster. Mol Biol Cell. 1996 May; 7(5):825-42.
        View in: PubMed PMC275932
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