Ignacia Echeverria Riesco, PhD

TitleAssociate Specialist
InstitutionUniversity of California San Francisco
Address1700 4th St
San Francisco CA 94158
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    Johns Hopkins UniversityPhDMolecular Biophysics

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Raveh B, Herricks T, Slaughter BD, Hogan JA, Upla P, Chemmama IE, Pellarin R, Echeverria I, Shivaraju M, Chaudhury AS, Wang J, Williams R, Unruh JR, Greenberg CH, Jacobs EY, Yu Z, de la Cruz MJ, Mironska R, Stokes DL, Aitchison JD, Jarrold MF, Gerton JL, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP. Integrative structure and functional anatomy of a nuclear pore complex. Nature. 2018 Mar 22; 555(7697):475-482. PMID: 29539637.
      View in: PubMed
    2. Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ. Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones. Cell Rep. 2017 06 06; 19(10):2033-2044. PMID: 28591576.
      View in: PubMed
    3. Schulze-Gahmen U, Echeverria I, Stjepanovic G, Bai Y, Lu H, Schneidman-Duhovny D, Doudna JA, Zhou Q, Sali A, Hurley JH. Insights into HIV-1 proviral transcription from integrative structure and dynamics of the Tat:AFF4:P-TEFb:TAR complex. Elife. 2016 10 12; 5. PMID: 27731797.
      View in: PubMed
    4. Ferrandino G, Nicola JP, Sánchez YE, Echeverria I, Liu Y, Amzel LM, Carrasco N. Na+ coordination at the Na2 site of the Na+/I- symporter. Proc Natl Acad Sci U S A. 2016 09 13; 113(37):E5379-88. PMID: 27562170; PMCID: PMC5027462 [Available on 03/13/17].
    5. Echeverria I, Liu Y, Gabelli SB, Amzel LM. Oncogenic mutations weaken the interactions that stabilize the p110a-p85a heterodimer in phosphatidylinositol 3-kinase a. FEBS J. 2015 Sep; 282(18):3528-42. PMID: 26122737; PMCID: PMC4573839.
    6. Winogradoff D, Echeverria I, Potoyan DA, Papoian GA. The Acetylation Landscape of the H4 Histone Tail: Disentangling the Interplay between the Specific and Cumulative Effects. J Am Chem Soc. 2015 May 20; 137(19):6245-53. PMID: 25905561.
      View in: PubMed
    7. Echeverria I, Papoian GA. DNA exit ramps are revealed in the binding landscapes obtained from simulations in helical coordinates. PLoS Comput Biol. 2015 Feb; 11(2):e1003980. PMID: 25675216; PMCID: PMC4326129.
    8. Echeverria I, Makarov DE, Papoian GA. Concerted dihedral rotations give rise to internal friction in unfolded proteins. J Am Chem Soc. 2014 Jun 18; 136(24):8708-13. PMID: 24844314.
      View in: PubMed
    9. Gabelli SB, Echeverria I, Alexander M, Duong-Ly KC, Chaves-Moreira D, Brower ET, Vogelstein B, Amzel LM. Activation of PI3Ka by physiological effectors and by oncogenic mutations: structural and dynamic effects. Biophys Rev. 2014 Mar 01; 6(1):89-95. PMID: 25309634.
      View in: PubMed
    10. Echeverria I, Amzel LM. Estimation of free-energy differences from computed work distributions: an application of Jarzynski's equality. J Phys Chem B. 2012 Sep 13; 116(36):10986-95. PMID: 22849340.
      View in: PubMed
    11. Echeverria I, Amzel LM. Disaccharide binding to galectin-1: free energy calculations and molecular recognition mechanism. Biophys J. 2011 May 04; 100(9):2283-92. PMID: 21539798; PMCID: PMC3149269.
    12. Messing SA, Gabelli SB, Echeverria I, Vogel JT, Guan JC, Tan BC, Klee HJ, McCarty DR, Amzel LM. Structural insights into maize viviparous14, a key enzyme in the biosynthesis of the phytohormone abscisic acid. Plant Cell. 2010 Sep; 22(9):2970-80. PMID: 20884803; PMCID: PMC2965545.
    13. Urquiza M, Melo-Cardenas J, Guevara T, Echeverria I, Rodriguez IC, Vanegas M, Amzel M, Patarroyo ME. a-Helix peptides designed from EBV-gH protein display higher antigenicity and induction of monocyte apoptosis than the native peptide. Amino Acids. 2010 Nov; 39(5):1507-19. PMID: 20473772; PMCID: PMC2963735.
    14. Echeverria I, Amzel LM. Helix propensities calculations for amino acids in alanine based peptides using Jarzynski's equality. Proteins. 2010 Apr; 78(5):1302-10. PMID: 20014024.
      View in: PubMed
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