Ignacia Echeverria Riesco

Ignacia Echeverria Riesco, PhD

Title	Associate Specialist
Institution	University of California San Francisco
Department	Bioengineering
Address	1700 4th St San Francisco CA 94158
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Biography

Education and Training

Johns Hopkins University

PhD

Molecular Biophysics

ORNG Applications

Websites

Bibliographic

Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.

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Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ. Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones. Cell Rep. 2017 06 06; 19(10):2033-2044. PMID: 28591576.

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Schulze-Gahmen U, Echeverria I, Stjepanovic G, Bai Y, Lu H, Schneidman-Duhovny D, Doudna JA, Zhou Q, Sali A, Hurley JH. Insights into HIV-1 proviral transcription from integrative structure and dynamics of the Tat:AFF4:P-TEFb:TAR complex. Elife. 2016 10 12; 5. PMID: 27731797.

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Ferrandino G, Nicola JP, Sánchez YE, Echeverria I, Liu Y, Amzel LM, Carrasco N. Na+ coordination at the Na2 site of the Na+/I- symporter. Proc Natl Acad Sci U S A. 2016 09 13; 113(37):E5379-88. PMID: 27562170; PMCID: PMC5027462 [Available on 03/13/17].

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Echeverria I, Liu Y, Gabelli SB, Amzel LM. Oncogenic mutations weaken the interactions that stabilize the p110a-p85a heterodimer in phosphatidylinositol 3-kinase a. FEBS J. 2015 Sep; 282(18):3528-42. PMID: 26122737; PMCID: PMC4573839.

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Winogradoff D, Echeverria I, Potoyan DA, Papoian GA. The Acetylation Landscape of the H4 Histone Tail: Disentangling the Interplay between the Specific and Cumulative Effects. J Am Chem Soc. 2015 May 20; 137(19):6245-53. PMID: 25905561.

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Echeverria I, Papoian GA. DNA exit ramps are revealed in the binding landscapes obtained from simulations in helical coordinates. PLoS Comput Biol. 2015 Feb; 11(2):e1003980. PMID: 25675216; PMCID: PMC4326129.

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Echeverria I, Makarov DE, Papoian GA. Concerted dihedral rotations give rise to internal friction in unfolded proteins. J Am Chem Soc. 2014 Jun 18; 136(24):8708-13. PMID: 24844314.

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Gabelli SB, Echeverria I, Alexander M, Duong-Ly KC, Chaves-Moreira D, Brower ET, Vogelstein B, Amzel LM. Activation of PI3Ka by physiological effectors and by oncogenic mutations: structural and dynamic effects. Biophys Rev. 2014 Mar 01; 6(1):89-95. PMID: 25309634.

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Echeverria I, Amzel LM. Estimation of free-energy differences from computed work distributions: an application of Jarzynski's equality. J Phys Chem B. 2012 Sep 13; 116(36):10986-95. PMID: 22849340.

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Echeverria I, Amzel LM. Disaccharide binding to galectin-1: free energy calculations and molecular recognition mechanism. Biophys J. 2011 May 04; 100(9):2283-92. PMID: 21539798; PMCID: PMC3149269.

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Messing SA, Gabelli SB, Echeverria I, Vogel JT, Guan JC, Tan BC, Klee HJ, McCarty DR, Amzel LM. Structural insights into maize viviparous14, a key enzyme in the biosynthesis of the phytohormone abscisic acid. Plant Cell. 2010 Sep; 22(9):2970-80. PMID: 20884803; PMCID: PMC2965545.

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Urquiza M, Melo-Cardenas J, Guevara T, Echeverria I, Rodriguez IC, Vanegas M, Amzel M, Patarroyo ME. a-Helix peptides designed from EBV-gH protein display higher antigenicity and induction of monocyte apoptosis than the native peptide. Amino Acids. 2010 Nov; 39(5):1507-19. PMID: 20473772; PMCID: PMC2963735.

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Echeverria I, Amzel LM. Helix propensities calculations for amino acids in alanine based peptides using Jarzynski's equality. Proteins. 2010 Apr; 78(5):1302-10. PMID: 20014024.

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