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Ignacia Echeverria Riesco, PhD

Title(s)Assistant Professor, Cellular Molecular Pharmacology
SchoolSchool of Medicine
Address1700 4th St
San Francisco CA 94158
Phone--
ORCID ORCID Icon0000-0003-4717-1467 Additional info
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    Johns Hopkins UniversityPhDMolecular Biophysics

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Structural basis of CD4 downregulation by HIV-1 Nef. Nat Struct Mol Biol. 2020 09; 27(9):822-828. Kwon Y, Kaake RM, Echeverria I, Suarez M, Karimian Shamsabadi M, Stoneham C, Ramirez PW, Kress J, Singh R, Sali A, Krogan N, Guatelli J, Jia X. PMID: 32719457.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    2. Structural dynamics of the human COP9 signalosome revealed by cross-linking mass spectrometry and integrative modeling. Proc Natl Acad Sci U S A. 2020 02 25; 117(8):4088-4098. Gutierrez C, Chemmama IE, Mao H, Yu C, Echeverria I, Block SA, Rychnovsky SD, Zheng N, Sali A, Huang L. PMID: 32034103.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    3. Modeling Biological Complexes Using Integrative Modeling Platform. Methods Mol Biol. 2019; 2022:353-377. Saltzberg D, Greenberg CH, Viswanath S, Chemmama I, Webb B, Pellarin R, Echeverria I, Sali A. PMID: 31396911.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    4. Integrative structure and functional anatomy of a nuclear pore complex. Nature. 2018 03 22; 555(7697):475-482. Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Raveh B, Herricks T, Slaughter BD, Hogan JA, Upla P, Chemmama IE, Pellarin R, Echeverria I, Shivaraju M, Chaudhury AS, Wang J, Williams R, Unruh JR, Greenberg CH, Jacobs EY, Yu Z, de la Cruz MJ, Mironska R, Stokes DL, Aitchison JD, Jarrold MF, Gerton JL, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP. PMID: 29539637.
      View in: PubMed   Mentions: 54     Fields:    Translation:AnimalsCells
    5. Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones. Cell Rep. 2017 06 06; 19(10):2033-2044. Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ. PMID: 28591576.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    6. Insights into HIV-1 proviral transcription from integrative structure and dynamics of the Tat:AFF4:P-TEFb:TAR complex. Elife. 2016 10 12; 5. Schulze-Gahmen U, Echeverria I, Stjepanovic G, Bai Y, Lu H, Schneidman-Duhovny D, Doudna JA, Zhou Q, Sali A, Hurley JH. PMID: 27731797.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    7. Na+ coordination at the Na2 site of the Na+/I- symporter. Proc Natl Acad Sci U S A. 2016 09 13; 113(37):E5379-88. Ferrandino G, Nicola JP, Sánchez YE, Echeverria I, Liu Y, Amzel LM, Carrasco N. PMID: 27562170.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    8. Oncogenic mutations weaken the interactions that stabilize the p110a-p85a heterodimer in phosphatidylinositol 3-kinase a. FEBS J. 2015 Sep; 282(18):3528-42. Echeverria I, Liu Y, Gabelli SB, Amzel LM. PMID: 26122737.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    9. The Acetylation Landscape of the H4 Histone Tail: Disentangling the Interplay between the Specific and Cumulative Effects. J Am Chem Soc. 2015 May 20; 137(19):6245-53. Winogradoff D, Echeverria I, Potoyan DA, Papoian GA. PMID: 25905561.
      View in: PubMed   Mentions: 21     Fields:    Translation:Cells
    10. DNA exit ramps are revealed in the binding landscapes obtained from simulations in helical coordinates. PLoS Comput Biol. 2015 Feb; 11(2):e1003980. Echeverria I, Papoian GA. PMID: 25675216.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    11. Concerted dihedral rotations give rise to internal friction in unfolded proteins. J Am Chem Soc. 2014 Jun 18; 136(24):8708-13. Echeverria I, Makarov DE, Papoian GA. PMID: 24844314.
      View in: PubMed   Mentions: 23     Fields:    Translation:Cells
    12. Activation of PI3Ka by physiological effectors and by oncogenic mutations: structural and dynamic effects. Biophys Rev. 2014 Mar 01; 6(1):89-95. Gabelli SB, Echeverria I, Alexander M, Duong-Ly KC, Chaves-Moreira D, Brower ET, Vogelstein B, Amzel LM. PMID: 25309634.
      View in: PubMed   Mentions:
    13. Estimation of free-energy differences from computed work distributions: an application of Jarzynski's equality. J Phys Chem B. 2012 Sep 13; 116(36):10986-95. Echeverria I, Amzel LM. PMID: 22849340.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    14. Disaccharide binding to galectin-1: free energy calculations and molecular recognition mechanism. Biophys J. 2011 May 04; 100(9):2283-92. Echeverria I, Amzel LM. PMID: 21539798.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    15. Structural insights into maize viviparous14, a key enzyme in the biosynthesis of the phytohormone abscisic acid. Plant Cell. 2010 Sep; 22(9):2970-80. Messing SA, Gabelli SB, Echeverria I, Vogel JT, Guan JC, Tan BC, Klee HJ, McCarty DR, Amzel LM. PMID: 20884803.
      View in: PubMed   Mentions: 50     Fields:    Translation:AnimalsCells
    16. a-Helix peptides designed from EBV-gH protein display higher antigenicity and induction of monocyte apoptosis than the native peptide. Amino Acids. 2010 Nov; 39(5):1507-19. Urquiza M, Melo-Cardenas J, Guevara T, Echeverria I, Rodriguez IC, Vanegas M, Amzel M, Patarroyo ME. PMID: 20473772.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    17. Helix propensities calculations for amino acids in alanine based peptides using Jarzynski's equality. Proteins. 2010 Apr; 78(5):1302-10. Echeverria I, Amzel LM. PMID: 20014024.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
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