Thomas Dalhuisen • UCSF Profiles

Thomas Dalhuisen, MS

Title(s)	Statistician & Data Scientist, Medicine
School	School of Medicine
Address	2540 23rd Street, #4124 San Francisco CA 94110
Pronouns	He/Him/His
ORCID	0000000191320496
vCard	Download vCard

Biography

education and training

The University of Edinburgh, Edinburgh, UK	MScR	07/2023	Population Biology
The University of Edinburgh, Edinburgh, UK	MScR	10/2020	Infectious Disease & Global Health
The University of Edinburgh, Edinburgh, UK	BSc (Hons)	05/2019	Biomedical Sciences & Infectious Disease
The University of British Columbia, Vancouver, BC, Canada		05/2018	Immunology & Microbiology

Bibliographic

selected publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

Long COVID is associated with lower percentages of mature, cytotoxic NK cell phenotypes. J Clin Invest. 2024 Dec 17; 135(4). Tsao T, Buck AM, Grimbert L, LaFranchi BH, Altamirano Poblano B, Fehrman EA, Dalhuisen T, Hsue PY, Kelly JD, Martin JN, Deeks SG, Hunt PW, Peluso MJ, Aguilar OA, Henrich TJ. PMID: 39688913; PMCID: PMC11827890.

View in: PubMed Mentions: Fields:
Med Medicine (General)
Post-SARS-CoV-2 Onset Myalgic Encephalomyelitis/Chronic Fatigue Syndrome Symptoms in Two Cohort Studies of COVID-19 Recovery. medRxiv. 2024 Nov 08. Jamal A, Dalhuisen T, Gallego Márquez N, Dziarski AD, Uy J, Walch SN, Thomas SA, Fehrman EA, Romero AE, Zelaya AS, Akasreku EA, Adeagbo TV, Pasetes EC, Akbas SY, Azola AM, Deeks SG, Kelly JD, Martin JN, Henrich TJ, Landay AL, Peluso MJ, Antar AAR. PMID: 39867374; PMCID: PMC11759845.

View in: PubMed Mentions:
Tissue-based T cell activation and viral RNA persist for up to 2 years after SARS-CoV-2 infection. Sci Transl Med. 2024 Jul 03; 16(754):eadk3295. Peluso MJ, Ryder D, Flavell RR, Wang Y, Levi J, LaFranchi BH, Deveau TM, Buck AM, Munter SE, Asare KA, Aslam M, Koch W, Szabo G, Hoh R, Deswal M, Rodriguez AE, Buitrago M, Tai V, Shrestha U, Lu S, Goldberg SA, Dalhuisen T, Vasquez JJ, Durstenfeld MS, Hsue PY, Kelly JD, Kumar N, Martin JN, Gambhir A, Somsouk M, Seo Y, Deeks SG, Laszik ZG, VanBrocklin HF, Henrich TJ. PMID: 38959327; PMCID: PMC11337933.

View in: PubMed Mentions: 10 Fields:
Med Medicine (General)Sci Science
Translation:Humans Cells
Plasma-based antigen persistence in the post-acute phase of COVID-19. Lancet Infect Dis. 2024 Jun; 24(6):e345-e347. Peluso MJ, Swank ZN, Goldberg SA, Lu S, Dalhuisen T, Borberg E, Senussi Y, Luna MA, Chang Song C, Clark A, Zamora A, Lew M, Viswanathan B, Huang B, Anglin K, Hoh R, Hsue PY, Durstenfeld MS, Spinelli MA, Glidden DV, Henrich TJ, Kelly JD, Deeks SG, Walt DR, Martin JN. PMID: 38604216; PMCID: PMC11650779.

View in: PubMed Mentions: 13 Fields:
Com Communicable Diseases
Translation:Humans Cells
Plasma-based antigen persistence in the post-acute phase of SARS-CoV-2 infection. medRxiv. 2023 Dec 29. Peluso MJ, Swank ZN, Goldberg SA, Lu S, Dalhuisen T, Borberg E, Senussi Y, Luna MA, Song CC, Clark A, Zamora A, Lew M, Viswanathan B, Huang B, Anglin K, Hoh R, Hsue PY, Durstenfeld MS, Spinelli MA, Glidden DV, Henrich TJ, Daniel Kelly J, Deeks SG, Walt DR, Martin JN. PMID: 37961239; PMCID: PMC10635183.

View in: PubMed Mentions:
Unusually Divergent Ubiquitin Genes and Proteins in Plasmodium Species. Genome Biol Evol. 2023 08 01; 15(8). Dalhuisen T, Plenderleith LJ, Ursani I, Philip N, Hahn BH, Sharp PM. PMID: 37481258; PMCID: PMC10457151.

View in: PubMed Mentions: 3 Fields:
Bio Biology Mol Molecular Biology
Translation:Animals
Multimodal Molecular Imaging Reveals Tissue-Based T Cell Activation and Viral RNA Persistence for Up to 2 Years Following COVID-19. medRxiv. 2023 Jul 31. Peluso MJ, Ryder D, Flavell R, Wang Y, Levi J, LaFranchi BH, Deveau TM, Buck AM, Munter SE, Asare KA, Aslam M, Koch W, Szabo G, Hoh R, Deswal M, Rodriguez A, Buitrago M, Tai V, Shrestha U, Lu S, Goldberg SA, Dalhuisen T, Durstenfeld MS, Hsue PY, Kelly JD, Kumar N, Martin JN, Gambir A, Somsouk M, Seo Y, Deeks SG, Laszik ZG, VanBrocklin HF, Henrich TJ. PMID: 37577714; PMCID: PMC10418298.

View in: PubMed Mentions:
The daily updated Dutch national database on COVID-19 epidemiology, vaccination and sewage surveillance. Sci Data. 2023 07 20; 10(1):469. Geubbels ELPE, Backer JA, Bakhshi-Raiez F, van der Beek RFHJ, van Benthem BHB, van den Boogaard J, Broekman EH, Dongelmans DA, Eggink D, van Gaalen RD, van Gageldonk A, Hahné S, Hajji K, Hofhuis A, van Hoek AJ, Kooijman MN, Kroneman A, Lodder W, van Rooijen M, Roorda W, Smorenburg N, Zwagemaker F, National sewage surveillance group, RIVM COVID-19 epidemiology, surveillance team, de Keizer NF, van Walle I, de Roda Husman AM, Ruijs C, van den Hof S. PMID: 37474530; PMCID: PMC10359398.

View in: PubMed Mentions: 3 Fields:
Sci Science
Translation:Humans Cells PHPublic Health
Number of COVID-19 hospitalisations averted by vaccination: Estimates for the Netherlands, January 6, 2021 through August 30, 2022. Vaccine. 2023 06 13; 41(26):3847-3854. van Iersel SCJL, McDonald SA, de Gier B, Knol MJ, de Melker HE, Henri van Werkhoven CH, Hahné SJM, RIVM COVID-19 epidemiology and surveillance team. PMID: 37202273; PMCID: PMC10169579.

View in: PubMed Mentions: 3 Fields:
All Allergy and Immunology
Translation:Humans PHPublic Health
Mpox outbreak in the Netherlands, 2022: public health response, characteristics of the first 1,000 cases and protection of the first-generation smallpox vaccine. Euro Surveill. 2023 03; 28(12). van Ewijk CE, Miura F, van Rijckevorsel G, de Vries HJ, Welkers MR, van den Berg OE, Friesema IH, van den Berg PR, Dalhuisen T, Wallinga J, Brandwagt D, van Cleef BA, Vennema H, Voordouw B, Koopmans M, van der Eijk AA, Swaan CM, Te Wierik MJ, Leenstra T, Op de Coul E, Franz E, Dutch Mpox Response Team, Members of the Dutch Mpox Response Team. PMID: 36951783; PMCID: PMC10037659.

View in: PubMed Mentions: 18 Fields:
Com Communicable Diseases
Translation:Humans Cells PHPublic Health
Empirical evidence of transmission over a school-household network for SARS-CoV-2; exploration of transmission pairs stratified by primary and secondary school. Epidemics. 2023 06; 43:100675. van Iersel SCJL, Backer JA, van Gaalen RD, Andeweg SP, Munday JD, Wallinga J, van Hoek AJ, RIVM COVID-19 epidemiology and surveillance group. PMID: 36889158; PMCID: PMC9968452.

View in: PubMed Mentions: 3 Fields:
Epi Epidemiology
Translation:Humans Cells
Discovery of lignin-transforming bacteria and enzymes in thermophilic environments using stable isotope probing. ISME J. 2022 08; 16(8):1944-1956. Levy-Booth DJ, Navas LE, Fetherolf MM, Liu LY, Dalhuisen T, Renneckar S, Eltis LD, Mohn WW. PMID: 35501417; PMCID: PMC9296663.

View in: PubMed Mentions: 5 Fields:
Env Environmental Health Mic Microbiology
Translation:Cells