Isabel Rodriguez-Barraquer, MD, PhD, MHS

Title(s)Associate Professor, Medicine
SchoolSchool of Medicine
Address1001 Potrero Avenue, #229
San Francisco CA 94110
PronounsShe/Her/Hers
ORCID ORCID Icon0000-0001-6784-1021 Additional info
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    Collapse Biography 
    Collapse education and training
    Pontificia Universidad Javeriana, Bogota, ColombiaMD06/2005Medicine
    Johns Hopkins University, BaltimoreMHS08/2012Biostatistics
    Johns Hopkins University, BaltimorePhD08/2012Epidemiology
    University of California, San Francisco, CA2019Diversity, Equity, and Inclusion Champion Training

    Collapse Overview 
    Collapse overview
    My research focuses in applying novel epidemiological and statistical methods to understand the dynamics of infectious diseases and inform control interventions. While I am interested in infectious diseases generally, most of my work has focused on understanding shifts in the epidemiology of vector borne diseases including dengue, leishmaniasis, chikungunya, malaria and Zika.
    Collapse Global Health Equity

    Collapse Research 
    Collapse research activities and funding
    Uncovering the dynamics of human pathogens using high throughput multiplexed serological tools
    NIH R35GM138361Sep 15, 2020 - Jun 30, 2025
    Role: Principal Investigator

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    Collapse Featured Publications

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Quantifying the role of importation on sustained malaria transmission in a low-to-moderate burden region of Southwest Uganda. medRxiv. 2025 May 15. Epstein A, Aramanzan O, Nabende I, Kayondo TM, Obbo M, Tumwesigye R, Wiringilimaana I, Mbabazi M, Kagurusi BA, Tukwasibwe S, Ssewanyana I, Routeledge I, Briggs J, Wesolowski A, Greenhouse B, Dorsey G, Arinaitwe E, Rodriguez-Barraquer I. PMID: 40463554; PMCID: PMC12132150.
      View in: PubMed   Mentions:
    2. Clone tracking through repeated malaria identifies high-fidelity memory CD4 T cell responses. Sci Immunol. 2025 Apr 25; 10(106):eads2957. Nideffer J, Bach F, Nankya F, Musinguzi K, Borna Š, Mantilla M, Zedi M, Garcia Romero A, Gerungan C, Yang N, Kim S, van der Ploeg K, Camanag K, Lopez L, Nansubuga E, Nankabirwa JI, Arinaitwe E, Boonrat P, Strubbe S, Cepika AM, Takahashi S, Dorsey G, Greenhouse B, Rodriguez-Barraquer I, Kamya MR, Bacchetta R, Ssewanyana I, Haque A, Roncarolo MG, Jagannathan P. PMID: 40279404.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    3. Relating household entomological measures to individual malaria risk. Res Sq. 2025 Feb 04. McClure M, Arinaitwe E, Kamya MR, Rosenthal PJ, Nankabirwa J, Maxwell K, Musiime A, Dorsey G, Greenhouse B, Rodriguez-Barraquer I. PMID: 39975909; PMCID: PMC11838747.
      View in: PubMed   Mentions:
    4. Strength and durability of indirect protection against SARS-CoV-2 infection through vaccine and infection-acquired immunity. Nat Commun. 2025 Jan 29; 16(1):1090. Tan ST, Rodríguez-Barraquer I, Kwan AT, Blumberg S, Park HJ, Hutchinson J, Leidner D, Lewnard JA, Sears D, Lo NC. PMID: 39881133; PMCID: PMC11779853.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    5. Reconciling heterogeneous dengue virus infection risk estimates from different study designs. Proc Natl Acad Sci U S A. 2025 Jan 07; 122(1):e2411768121. Huang AT, Buddhari D, Kaewhiran S, Iamsirithaworn S, Khampaen D, Farmer A, Fernandez S, Thomas SJ, Rodriguez-Barraquer I, Hunsawong T, Srikiatkhachorn A, Ribeiro Dos Santos G, O'Driscoll M, Hamins-Puertolas M, Endy T, Rothman AL, Cummings DAT, Anderson K, Salje H. PMID: 39739790; PMCID: PMC11725863.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    6. Linking multiple serological assays to infer dengue virus infections from paired samples using mixture models. medRxiv. 2024 Dec 10. Hamins-Puértolas M, Buddhari D, Salje H, Huang AT, Hunsawong T, Cummings DAT, Fernandez S, Farmer A, Kaewhiran S, Khampaen D, Srikiatkhachorn A, Iamsirithaworn S, Waickman A, Thomas SJ, Endy T, Rothman AL, Anderson KB, Rodriguez-Barraquer I. PMID: 39711706; PMCID: PMC11661395.
      View in: PubMed   Mentions:
    7. Gestational SARS-CoV-2 Infection in a Ugandan Birth Cohort: High Incidence, Mild Maternal Disease, and Evidence of Association with Transient Infant Stunting. Am J Trop Med Hyg. 2024 Nov 06; 111(5):1107-1117. Jacobson KB, Röltgen K, Lam B, Nayebare P, Kakuru A, Kizza J, Aguti M, Nankya F, Briggs J, Takahashi S, Greenhouse B, Rodriguez-Barraquer I, van der Ploeg K, Wohlstadter JN, Sigal GB, Roh ME, Nankabirwa JI, Cuu G, Gaw SL, Rosenthal PJ, Kamya MR, Ssewanyana I, Dorsey G, Boyd SD, Jagannathan P. PMID: 39288758; PMCID: PMC11542540.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    8. Challenges and Approaches to Establishing Multi-Pathogen Serosurveillance: Findings from the 2023 Serosurveillance Summit. Am J Trop Med Hyg. 2024 Nov 06; 111(5):1145-1152. Carcelen AC, Kong AC, Takahashi S, Hegde S, Jaenisch T, Chu M, Rochford R, Kostandova N, Gurley ES, Wesolowski A, Azman AS, van der Klis FRM, den Hartog G, Drakeley C, Heaney CD, Winter AK, Salje H, Rodriguez-Barraquer I, Leung DT, Njenga SM, Kagucia EW, Jambo KC, Wolter N, Charles RC, Saboyá-Díaz MI, Martin DL, Moss WJ. PMID: 39226906; PMCID: PMC11542533.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    9. Dramatic resurgence of malaria after 7 years of intensive vector control interventions in Eastern Uganda. PLOS Glob Public Health. 2024; 4(8):e0003254. Kamya MR, Nankabirwa JI, Arinaitwe E, Rek J, Zedi M, Maiteki-Sebuguzi C, Opigo J, Staedke SG, Oruni A, Donnelly MJ, Greenhouse B, Briggs J, Krezanoski PJ, Bousema T, Rosenthal PJ, Olwoch P, Jagannathan P, Rodriguez-Barraquer I, Dorsey G. PMID: 39208072; PMCID: PMC11361418.
      View in: PubMed   Mentions: 5  
    10. Dramatic resurgence of malaria after 7 years of intensive vector control interventions in Eastern Uganda. medRxiv. 2024 Mar 16. Kamya MR, Nankabirwa JI, Arinaitwe E, Rek J, Zedi M, Maiteki-Sebuguzi C, Opigo J, Staedke SG, Oruni A, Donnelly MJ, Greenhouse B, Briggs J, Krezanoski PJ, Bousema T, Rosenthal PJ, Olwoch P, Jagannathan P, Rodriguez-Barraquer I, Dorsey G. PMID: 38559091; PMCID: PMC10980127.
      View in: PubMed   Mentions:
    11. Household immunity and individual risk of infection with dengue virus in a prospective, longitudinal cohort study. Nat Microbiol. 2024 Jan; 9(1):274-283. Hamins-Puértolas M, Buddhari D, Salje H, Cummings DAT, Fernandez S, Farmer A, Kaewhiran S, Khampaen D, Iamsirithaworn S, Srikiatkhachorn A, Waickman A, Thomas SJ, Rothman AL, Endy T, Rodriguez-Barraquer I, Anderson KB. PMID: 38110699; PMCID: PMC10895643.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    12. Maternally derived antibody titer dynamics and risk of hospitalized infant dengue disease. Proc Natl Acad Sci U S A. 2023 10 10; 120(41):e2308221120. O'Driscoll M, Buddhari D, Huang AT, Waickman A, Kaewhirun S, Iamsirithaworn S, Khampaen D, Farmer A, Fernandez S, Rodriguez-Barraquer I, Srikiatkhachorn A, Thomas S, Endy T, Rothman AL, Anderson K, Cummings DAT, Salje H. PMID: 37774093; PMCID: PMC10576102.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    13. SARS-CoV-2 Serology Across Scales: A Framework for Unbiased Estimation of Cumulative Incidence Incorporating Antibody Kinetics and Epidemic Recency. Am J Epidemiol. 2023 09 01; 192(9):1562-1575. Takahashi S, Peluso MJ, Hakim J, Turcios K, Janson O, Routledge I, Busch MP, Hoh R, Tai V, Kelly JD, Martin JN, Deeks SG, Henrich TJ, Greenhouse B, Rodríguez-Barraquer I. PMID: 37119030; PMCID: PMC10472487.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    14. Metagenomic next-generation sequencing to characterize potential etiologies of non-malarial fever in a cohort living in a high malaria burden area of Uganda. PLOS Glob Public Health. 2023; 3(5):e0001675. Mwakibete L, Takahashi S, Ahyong V, Black A, Rek J, Ssewanyana I, Kamya M, Dorsey G, Jagannathan P, Rodríguez-Barraquer I, Tato CM, Greenhouse B. PMID: 37134083; PMCID: PMC10156012.
      View in: PubMed   Mentions: 5  
    15. Mapping malaria incidence using routine health facility surveillance data in Uganda. BMJ Glob Health. 2023 05; 8(5). Epstein A, Namuganga JF, Nabende I, Kamya EV, Kamya MR, Dorsey G, Sturrock H, Bhatt S, Rodríguez-Barraquer I, Greenhouse B. PMID: 37208120; PMCID: PMC10201255.
      View in: PubMed   Mentions: 5     Fields:    
    16. Antibodies to repeat-containing antigens in Plasmodium falciparum are exposure-dependent and short-lived in children in natural malaria infections. Elife. 2023 02 15; 12. Raghavan M, Kalantar KL, Duarte E, Teyssier N, Takahashi S, Kung AF, Rajan JV, Rek J, Tetteh KKA, Drakeley C, Ssewanyana I, Rodriguez-Barraquer I, Greenhouse B, DeRisi JL. PMID: 36790168; PMCID: PMC10005774.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimals
    17. Malaria-driven expansion of adaptive-like functional CD56-negative NK cells correlates with clinical immunity to malaria. Sci Transl Med. 2023 01 25; 15(680):eadd9012. Ty M, Sun S, Callaway PC, Rek J, Press KD, van der Ploeg K, Nideffer J, Hu Z, Klemm S, Greenleaf W, Donato M, Tukwasibwe S, Arinaitwe E, Nankya F, Musinguzi K, Andrew D, de la Parte L, Mori DM, Lewis SN, Takahashi S, Rodriguez-Barraquer I, Greenhouse B, Blish C, Utz PJ, Khatri P, Dorsey G, Kamya M, Boyle M, Feeney M, Ssewanyana I, Jagannathan P. PMID: 36696483; PMCID: PMC9976268.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    18. Infectiousness of SARS-CoV-2 breakthrough infections and reinfections during the Omicron wave. Nat Med. 2023 02; 29(2):358-365. Tan ST, Kwan AT, Rodríguez-Barraquer I, Singer BJ, Park HJ, Lewnard JA, Sears D, Lo NC. PMID: 36593393; PMCID: PMC9974584.
      View in: PubMed   Mentions: 105     Fields:    Translation:HumansCells
    19. Early immune markers of clinical, virological, and immunological outcomes in patients with COVID-19: a multi-omics study. Elife. 2022 10 14; 11. Hu Z, van der Ploeg K, Chakraborty S, Arunachalam PS, Mori DAM, Jacobson KB, Bonilla H, Parsonnet J, Andrews JR, Holubar M, Subramanian A, Khosla C, Maldonado Y, Hedlin H, de la Parte L, Press K, Ty M, Tan GS, Blish C, Takahashi S, Rodriguez-Barraquer I, Greenhouse B, Butte AJ, Singh U, Pulendran B, Wang TT, Jagannathan P. PMID: 36239699; PMCID: PMC9566856.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    20. East Africa International Center of Excellence for Malaria Research: Summary of Key Research Findings. Am J Trop Med Hyg. 2022 10 11; 107(4_Suppl):21-32. Nankabirwa JI, Rek J, Arinaitwe E, Namuganga JF, Nsobya SL, Asua V, Mawejje HD, Epstein A, Greenhouse B, Rodriguez-Barraquer I, Briggs J, Krezanoski PJ, Rosenthal PJ, Conrad M, Smith D, Staedke SG, Drakeley C, Bousema T, Andolina C, Donnelly MJ, Kamya MR, Dorsey G. PMID: 36228916; PMCID: PMC9662228.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsPHPublic Health
    21. Building an integrated serosurveillance platform to inform public health interventions: Insights from an experts' meeting on serum biomarkers. PLoS Negl Trop Dis. 2022 10; 16(10):e0010657. Wiens KE, Jauregui B, Arnold BF, Banke K, Wade D, Hayford K, Costero-Saint Denis A, Hall RH, Salje H, Rodriguez-Barraquer I, Azman AS, Vernet G, Leung DT, Collaboration on Integrated Biomarkers Surveillance. PMID: 36201428; PMCID: PMC9536637.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansPHPublic Health
    22. Simulating the Impacts of Augmenting Intensive Vector Control with Mass Drug Administration or Test-and-Treat Strategies on the Malaria Infectious Reservoir. Am J Trop Med Hyg. 2022 11 14; 107(5):1028-1035. Nankabirwa JI, Arinaitwe E, Briggs J, Rek J, Rosenthal PJ, Kamya MR, Olwoch P, Smith DL, Rodriguez-Barraquer I, Dorsey G, Greenhouse B. PMID: 36191870; PMCID: PMC9709029.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    23. Dcifer: an IBD-based method to calculate genetic distance between polyclonal infections. Genetics. 2022 09 30; 222(2). Gerlovina I, Gerlovin B, Rodríguez-Barraquer I, Greenhouse B. PMID: 36000888; PMCID: PMC9526043.
      View in: PubMed   Mentions: 19     Fields:    
    24. Resurgence of malaria in Uganda despite sustained indoor residual spraying and repeated long lasting insecticidal net distributions. PLOS Glob Public Health. 2022; 2(9):e0000676. Epstein A, Maiteki-Sebuguzi C, Namuganga JF, Nankabirwa JI, Gonahasa S, Opigo J, Staedke SG, Rutazaana D, Arinaitwe E, Kamya MR, Bhatt S, Rodríguez-Barraquer I, Greenhouse B, Donnelly MJ, Dorsey G. PMID: 36962736; PMCID: PMC10022262.
      View in: PubMed   Mentions: 25  
    25. Genetic variation that determines TAPBP expression levels associates with the course of malaria in an HLA allotype-dependent manner. Proc Natl Acad Sci U S A. 2022 07 19; 119(29):e2205498119. Walker-Sperling V, Digitale JC, Viard M, Martin MP, Bashirova A, Yuki Y, Ramsuran V, Kulkarni S, Naranbhai V, Li H, Anderson SK, Yum L, Clifford R, Kibuuka H, Ake J, Thomas R, Rowland-Jones S, Rek J, Arinaitwe E, Kamya M, Rodriguez-Barraquer I, Feeney ME, Carrington M. PMID: 35858344; PMCID: PMC9303992.
      View in: PubMed   Mentions: 3     Fields:    
    26. Assessing the role of multiple mechanisms increasing the age of dengue cases in Thailand. Proc Natl Acad Sci U S A. 2022 05 17; 119(20):e2115790119. Huang AT, Takahashi S, Salje H, Wang L, Garcia-Carreras B, Anderson K, Endy T, Thomas S, Rothman AL, Klungthong C, Jones AR, Fernandez S, Iamsirithaworn S, Doung-Ngern P, Rodriguez-Barraquer I, Cummings DAT. PMID: 35533273; PMCID: PMC9171776.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansPHPublic Health
    27. Using sero-epidemiology to monitor disparities in vaccination and infection with SARS-CoV-2. Nat Commun. 2022 05 04; 13(1):2451. Routledge I, Takahashi S, Epstein A, Hakim J, Janson O, Turcios K, Vinden J, Risos JT, Baniqued MR, Pham L, Di Germanio C, Busch M, Kushel M, Greenhouse B, Rodríguez-Barraquer I. PMID: 35508478; PMCID: PMC9068757.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCellsPHPublic Health
    28. TNF-α+ CD4+ T cells dominate the SARS-CoV-2 specific T cell response in COVID-19 outpatients and are associated with durable antibodies. Cell Rep Med. 2022 06 21; 3(6):100640. van der Ploeg K, Kirosingh AS, Mori DAM, Chakraborty S, Hu Z, Sievers BL, Jacobson KB, Bonilla H, Parsonnet J, Andrews JR, Press KD, Ty MC, Ruiz-Betancourt DR, de la Parte L, Tan GS, Blish CA, Takahashi S, Rodriguez-Barraquer I, Greenhouse B, Singh U, Wang TT, Jagannathan P. PMID: 35588734; PMCID: PMC9061140.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCells
    29. Beneath the surface: Amino acid variation underlying two decades of dengue virus antigenic dynamics in Bangkok, Thailand. PLoS Pathog. 2022 05; 18(5):e1010500. Huang AT, Salje H, Escoto AC, Chowdhury N, Chávez C, Garcia-Carreras B, Rutvisuttinunt W, Maljkovic Berry I, Gromowski GD, Wang L, Klungthong C, Thaisomboonsuk B, Nisalak A, Trimmer-Smith LM, Rodriguez-Barraquer I, Ellison DW, Jones AR, Fernandez S, Thomas SJ, Smith DJ, Jarman R, Whitehead SS, Cummings DAT, Katzelnick LC. PMID: 35500035; PMCID: PMC9098070.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    30. COVID-19 Vaccination and Estimated Public Health Impact in California. JAMA Netw Open. 2022 04 01; 5(4):e228526. Tan ST, Park HJ, Rodríguez-Barraquer I, Rutherford GW, Bibbins-Domingo K, Schechter R, Lo NC. PMID: 35452106; PMCID: PMC9034409.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansPHPublic Health
    31. Risk factor targeting for vaccine prioritization during the COVID-19 pandemic. Sci Rep. 2022 Feb 23; 12(1):3055. Chapman LAC, Shukla P, Rodríguez-Barraquer I, Shete PB, León TM, Bibbins-Domingo K, Rutherford GW, Schechter R, Lo NC. PMID: 35197495; PMCID: PMC8866501.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCellsPHPublic Health
    32. Seroprevalence of anti-SARS-CoV-2 antibodies in Colombia, 2020: A population-based study. Lancet Reg Health Am. 2022 May; 9:100195. Mercado-Reyes M, Malagón-Rojas J, Rodríguez-Barraquer I, Zapata-Bedoya S, Wiesner M, Cucunubá Z, Toloza-Pérez YG, Hernández-Ortiz JP, Acosta-Reyes J, Parra-Barrera E, Ibáñez-Beltrán E, Quinche GG, Muñoz-Galindo L, Rubio V, Galindo-Borda M, Osorio-Velázquez EG, Bermúdez-Forero A, Pinto-Chacón N, Puerto-Castro G, Franco-Muñoz C, Estupiñan MI, Villar LÁ, Gore-Saravia N, Miranda-Montoya MC, Castellanos J, Valle EM, Navarro-Lechuga E, Oviedo JD, Ospina-Martínez M. PMID: 35156075; PMCID: PMC8817632.
      View in: PubMed   Mentions: 16  
    33. Early immune responses have long-term associations with clinical, virologic, and immunologic outcomes in patients with COVID-19. Res Sq. 2022 Feb 02. Hu Z, van der Ploeg K, Chakraborty S, Arunachalam P, Mori D, Jacobson K, Bonilla H, Parsonnet J, Andrews J, Hedlin H, de la Parte L, Dantzler K, Ty M, Tan G, Blish C, Takahashi S, Rodriguez-Barraquer I, Greenhouse B, Butte A, Singh U, Pulendran B, Wang T, Jagannathan P. PMID: 35132407; PMCID: PMC8820672.
      View in: PubMed   Mentions: 1  
    34. Persistence, Magnitude, and Patterns of Postacute Symptoms and Quality of Life Following Onset of SARS-CoV-2 Infection: Cohort Description and Approaches for Measurement. Open Forum Infect Dis. 2022 Feb; 9(2):ofab640. Peluso MJ, Kelly JD, Lu S, Goldberg SA, Davidson MC, Mathur S, Durstenfeld MS, Spinelli MA, Hoh R, Tai V, Fehrman EA, Torres L, Hernandez Y, Williams MC, Arreguin MI, Ngo LH, Deswal M, Munter SE, Martinez EO, Anglin KA, Romero MD, Tavs J, Rugart PR, Chen JY, Sans HM, Murray VW, Ellis PK, Donohue KC, Massachi JA, Weiss JO, Mehdi I, Pineda-Ramirez J, Tang AF, Wenger MA, Assenzio MT, Yuan Y, Krone MR, Rutishauser RL, Rodriguez-Barraquer I, Greenhouse B, Sauceda JA, Gandhi M, Scheffler AW, Hsue PY, Henrich TJ, Deeks SG, Martin JN. PMID: 35106317; PMCID: PMC8755302.
      View in: PubMed   Mentions: 54  
    35. Age-Related Changes in Malaria Clinical Phenotypes During Infancy Are Modified by Sickle Cell Trait. Clin Infect Dis. 2021 11 16; 73(10):1887-1895. Zehner N, Adrama H, Kakuru A, Andra T, Kajubi R, Conrad M, Nankya F, Clark TD, Kamya M, Rodriguez-Barraquer I, Dorsey G, Jagannathan P. PMID: 33738485; PMCID: PMC8599196.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimals
    36. Using sero-epidemiology to monitor disparities in vaccination and infection with SARS-CoV-2. medRxiv. 2021 Oct 20. Routledge I, Takahashi S, Epstein A, Hakim J, Janson O, Turcios K, Vinden J, Risos JT, Baniqued MR, Pham L, Di Germanio C, Busch M, Kushel M, Greenhouse B, Rodríguez-Barraquer I. PMID: 34642695; PMCID: PMC8509086.
      View in: PubMed   Mentions:
    37. SARS-CoV-2 serology across scales: a framework for unbiased seroprevalence estimation incorporating antibody kinetics and epidemic recency. medRxiv. 2021 Sep 14. Takahashi S, Peluso MJ, Hakim J, Turcios K, Janson O, Routledge I, Busch MP, Hoh R, Tai V, Kelly JD, Martin JN, Deeks SG, Henrich TJ, Greenhouse B, Rodríguez-Barraquer I. PMID: 34545373; PMCID: PMC8452112.
      View in: PubMed   Mentions:
    38. Trade-offs between individual and ensemble forecasts of an emerging infectious disease. Nat Commun. 2021 09 10; 12(1):5379. Oidtman RJ, Omodei E, Kraemer MUG, Castañeda-Orjuela CA, Cruz-Rivera E, Misnaza-Castrillón S, Cifuentes MP, Rincon LE, Cañon V, Alarcon P, España G, Huber JH, Hill SC, Barker CM, Johansson MA, Manore CA, Reiner RC, Rodriguez-Barraquer I, Siraj AS, Frias-Martinez E, García-Herranz M, Perkins TA. PMID: 34508077; PMCID: PMC8433472.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansPHPublic Health
    39. Long-term SARS-CoV-2-specific immune and inflammatory responses in individuals recovering from COVID-19 with and without post-acute symptoms. Cell Rep. 2021 08 10; 36(6):109518. Peluso MJ, Deitchman AN, Torres L, Iyer NS, Munter SE, Nixon CC, Donatelli J, Thanh C, Takahashi S, Hakim J, Turcios K, Janson O, Hoh R, Tai V, Hernandez Y, Fehrman EA, Spinelli MA, Gandhi M, Trinh L, Wrin T, Petropoulos CJ, Aweeka FT, Rodriguez-Barraquer I, Kelly JD, Martin JN, Deeks SG, Greenhouse B, Rutishauser RL, Henrich TJ. PMID: 34358460; PMCID: PMC8342976.
      View in: PubMed   Mentions: 117     Fields:    Translation:HumansCells
    40. SARS-CoV-2 antibody magnitude and detectability are driven by disease severity, timing, and assay. Sci Adv. 2021 Jul; 7(31). Peluso MJ, Takahashi S, Hakim J, Kelly JD, Torres L, Iyer NS, Turcios K, Janson O, Munter SE, Thanh C, Donatelli J, Nixon CC, Hoh R, Tai V, Fehrman EA, Hernandez Y, Spinelli MA, Gandhi M, Palafox MA, Vallari A, Rodgers MA, Prostko J, Hackett J, Trinh L, Wrin T, Petropoulos CJ, Chiu CY, Norris PJ, DiGermanio C, Stone M, Busch MP, Elledge SK, Zhou XX, Wells JA, Shu A, Kurtz TW, Pak JE, Wu W, Burbelo PD, Cohen JI, Rutishauser RL, Martin JN, Deeks SG, Henrich TJ, Rodriguez-Barraquer I, Greenhouse B. PMID: 34330709; PMCID: PMC8324059.
      View in: PubMed   Mentions: 85     Fields:    
    41. Association of Inhibitory Killer Cell Immunoglobulin-like Receptor Ligands With Higher Plasmodium falciparum Parasite Prevalence. J Infect Dis. 2021 07 02; 224(1):175-183. Digitale JC, Callaway PC, Martin M, Nelson G, Viard M, Rek J, Arinaitwe E, Dorsey G, Kamya M, Carrington M, Rodriguez-Barraquer I, Feeney ME. PMID: 33165540; PMCID: PMC8491837.
      View in: PubMed   Mentions: 6     Fields:    
    42. Evaluation of the extended efficacy of the Dengvaxia vaccine against symptomatic and subclinical dengue infection. Nat Med. 2021 08; 27(8):1395-1400. Salje H, Alera MT, Chua MN, Hunsawong T, Ellison D, Srikiatkhachorn A, Jarman RG, Gromowski GD, Rodriguez-Barraquer I, Cauchemez S, Cummings DAT, Macareo L, Yoon IK, Fernandez S, Rothman AL. PMID: 34168334; PMCID: PMC8364868.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    43. Sources of persistent malaria transmission in a setting with effective malaria control in eastern Uganda: a longitudinal, observational cohort study. Lancet Infect Dis. 2021 11; 21(11):1568-1578. Andolina C, Rek JC, Briggs J, Okoth J, Musiime A, Ramjith J, Teyssier N, Conrad M, Nankabirwa JI, Lanke K, Rodriguez-Barraquer I, Meerstein-Kessel L, Arinaitwe E, Olwoch P, Rosenthal PJ, Kamya MR, Dorsey G, Greenhouse B, Drakeley C, Staedke SG, Bousema T. PMID: 34146476; PMCID: PMC8554388.
      View in: PubMed   Mentions: 66     Fields:    Translation:HumansAnimals
    44. Citywide serosurveillance of the initial SARS-CoV-2 outbreak in San Francisco using electronic health records. Nat Commun. 2021 06 11; 12(1):3566. Routledge I, Epstein A, Takahashi S, Janson O, Hakim J, Duarte E, Turcios K, Vinden J, Sujishi K, Rangel J, Coh M, Besana L, Ho WK, Oon CY, Ong CM, Yun C, Lynch K, Wu AHB, Wu W, Karlon W, Thornborrow E, Peluso MJ, Henrich TJ, Pak JE, Briggs J, Greenhouse B, Rodriguez-Barraquer I. PMID: 34117227; PMCID: PMC8195995.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCellsPHPublic Health
    45. The impact of stopping and starting indoor residual spraying on malaria burden in Uganda. Nat Commun. 2021 05 11; 12(1):2635. Namuganga JF, Epstein A, Nankabirwa JI, Mpimbaza A, Kiggundu M, Sserwanga A, Kapisi J, Arinaitwe E, Gonahasa S, Opigo J, Ebong C, Staedke SG, Shililu J, Okia M, Rutazaana D, Maiteki-Sebuguzi C, Belay K, Kamya MR, Dorsey G, Rodriguez-Barraquer I. PMID: 33976132; PMCID: PMC8113470.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansAnimalsPHPublic Health
    46. Comparison of infection control strategies to reduce COVID-19 outbreaks in homeless shelters in the United States: a simulation study. BMC Med. 2021 05 07; 19(1):116. Chapman LAC, Kushel M, Cox SN, Scarborough A, Cawley C, Nguyen TQ, Rodriguez-Barraquer I, Greenhouse B, Imbert E, Lo NC. PMID: 33962621; PMCID: PMC8103431.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansPHPublic Health
    47. Routine asymptomatic testing strategies for airline travel during the COVID-19 pandemic: a simulation study. Lancet Infect Dis. 2021 07; 21(7):929-938. Kiang MV, Chin ET, Huynh BQ, Chapman LAC, Rodríguez-Barraquer I, Greenhouse B, Rutherford GW, Bibbins-Domingo K, Havlir D, Basu S, Lo NC. PMID: 33765417; PMCID: PMC7984872.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansCellsPHPublic Health
    48. HLA Alleles B*53:01 and C*06:02 Are Associated With Higher Risk of P. falciparum Parasitemia in a Cohort in Uganda. Front Immunol. 2021; 12:650028. Digitale JC, Callaway PC, Martin M, Nelson G, Viard M, Rek J, Arinaitwe E, Dorsey G, Kamya M, Carrington M, Rodriguez-Barraquer I, Feeney ME. PMID: 33815410; PMCID: PMC8017319.
      View in: PubMed   Mentions: 7     Fields:    
    49. Rapid implementation of a cohort for the study of post-acute sequelae of SARS-CoV-2 infection/COVID-19. medRxiv. 2021 Mar 12. Peluso MJ, Kelly JD, Lu S, Goldberg SA, Davidson MC, Mathur S, Durstenfeld MS, Spinelli MA, Hoh R, Tai V, Fehrman EA, Torres L, Hernandez Y, Williams MC, Arreguin MI, Bautista JA, Ngo LH, Deswal M, Munter SE, Martinez EO, Anglin KA, Romero MD, Tavs J, Rugart PR, Chen JY, Sans HM, Murray VW, Ellis PK, Donohue KC, Massachi JA, Weiss JO, Mehdi I, Pineda-Ramirez J, Tang AF, Wenger M, Assenzio M, Yuan Y, Krone M, Rutishauser RL, Rodriguez-Barraquer I, Greenhouse B, Sauceda JA, Gandhi M, Hsue PY, Henrich TJ, Deeks SG, Martin JN. PMID: 33758895; PMCID: PMC7987054.
      View in: PubMed   Mentions:
    50. SARS-CoV-2 antibody magnitude and detectability are driven by disease severity, timing, and assay. medRxiv. 2021 Mar 05. Peluso MJ, Takahashi S, Hakim J, Kelly JD, Torres L, Iyer NS, Turcios K, Janson O, Munter SE, Thanh C, Nixon CC, Hoh R, Tai V, Fehrman EA, Hernandez Y, Spinelli MA, Gandhi M, Palafox MA, Vallari A, Rodgers MA, Prostko J, Hackett J, Trinh L, Wrin T, Petroplolous CJ, Chiu CY, Norris PJ, DiGermanio C, Stone M, Busch MP, Elledge SK, Zhou XX, Wells JA, Shu A, Kurtz TW, Pak JE, Wu W, Burbelo PD, Cohen JI, Rutishauser RL, Martin JN, Deeks SG, Henrich TJ, Rodriguez-Barraquer I, Greenhouse B. PMID: 33688675; PMCID: PMC7941652.
      View in: PubMed   Mentions:
    51. Long-Term SARS-CoV-2-Specific Immune and Inflammatory Responses Across a Clinically Diverse Cohort of Individuals Recovering from COVID-19. medRxiv. 2021 Mar 01. Peluso MJ, Deitchman AN, Torres L, Iyer NS, Nixon CC, Munter SE, Donatelli J, Thanh C, Takahashi S, Hakim J, Turcios K, Janson O, Hoh R, Tai V, Hernandez Y, Fehrman E, Spinelli MA, Gandhi M, Trinh L, Wrin T, Petropoulos CJ, Aweeka FT, Rodriguez-Barraquer I, Kelly JD, Martin JN, Deeks SG, Greenhouse B, Rutishauser RL, Henrich TJ. PMID: 33688685; PMCID: PMC7941662.
      View in: PubMed   Mentions:
    52. Characterization and Biomarker Analyses of Post-COVID-19 Complications and Neurological Manifestations. Cells. 2021 02 13; 10(2). Sun B, Tang N, Peluso MJ, Iyer NS, Torres L, Donatelli JL, Munter SE, Nixon CC, Rutishauser RL, Rodriguez-Barraquer I, Greenhouse B, Kelly JD, Martin JN, Deeks SG, Henrich TJ, Pulliam L. PMID: 33668514; PMCID: PMC7918597.
      View in: PubMed   Mentions: 97     Fields:    Translation:HumansCells
    53. Citywide serosurveillance of the initial SARS-CoV-2 outbreak in San Francisco. Res Sq. 2021 Feb 04. Routledge I, Epstein A, Takahashi S, Janson O, Hakim J, Duarte E, Turcios K, Vinden J, Sujishi K, Rangel J, Coh M, Besana L, Ho WK, Oon CY, Ong CM, Yun C, Lynch K, Wu AHB, Wu W, Karlon W, Thornborrow E, Peluso MJ, Henrich TJ, Pak JE, Briggs J, Greenhouse B, Rodriguez-Barraquer I. PMID: 33564754; PMCID: PMC7872360.
      View in: PubMed   Mentions:
    54. Within-household clustering of genetically related Plasmodium falciparum infections in a moderate transmission area of Uganda. Malar J. 2021 Feb 02; 20(1):68. Briggs J, Kuchta A, Murphy M, Tessema S, Arinaitwe E, Rek J, Chen A, Nankabirwa JI, Drakeley C, Smith D, Bousema T, Kamya M, Rodriguez-Barraquer I, Staedke S, Dorsey G, Rosenthal PJ, Greenhouse B. PMID: 33531029; PMCID: PMC8042884.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    55. Influenza, Varicella, and Mumps Outbreaks in US Migrant Detention Centers. JAMA. 2021 Jan 12; 325(2):180-182. Lo NC, Nyathi S, Chapman LAC, Rodriguez-Barraquer I, Kushel M, Bibbins-Domingo K, Lewnard JA. PMID: 33119037; PMCID: PMC7596678.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansPHPublic Health
    56. Routine asymptomatic testing strategies for airline travel during the COVID-19 pandemic: a simulation analysis. medRxiv. 2020 Dec 11. Kiang MV, Chin ET, Huynh BQ, Chapman LAC, Rodríguez-Barraquer I, Greenhouse B, Rutherford GW, Bibbins-Domingo K, Havlir D, Basu S, Lo NC. PMID: 33330886; PMCID: PMC7743095.
      View in: PubMed   Mentions:
    57. Estimating malaria incidence from routine health facility-based surveillance data in Uganda. Malar J. 2020 Dec 02; 19(1):445. Epstein A, Namuganga JF, Kamya EV, Nankabirwa JI, Bhatt S, Rodriguez-Barraquer I, Staedke SG, Kamya MR, Dorsey G, Greenhouse B. PMID: 33267886; PMCID: PMC7709253.
      View in: PubMed   Mentions: 7     Fields:    
    58. Are Seroprevalence Estimates for Severe Acute Respiratory Syndrome Coronavirus 2 Biased? J Infect Dis. 2020 11 09; 222(11):1772-1775. Takahashi S, Greenhouse B, Rodríguez-Barraquer I. PMID: 32856712; PMCID: PMC7499591.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansCellsPHPublic Health
    59. Universal Polymerase Chain Reaction and Antibody Testing Demonstrate Little to No Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 in a Rural Community. Open Forum Infect Dis. 2021 Jan; 8(1):ofaa531. Appa A, Takahashi S, Rodriguez-Barraquer I, Chamie G, Sawyer A, Duarte E, Hakim J, Turcios K, Vinden J, Janson O, Manglik A, Peluso MJ, Deeks SG, Henrich TJ, Torres L, Rodgers M, Hackett J, Chiu C, Havlir D, Greenhouse B. PMID: 34109255; PMCID: PMC7665736.
      View in: PubMed   Mentions: 7  
    60. Sex-based differences in clearance of chronic Plasmodium falciparum infection. Elife. 2020 10 27; 9. Briggs J, Teyssier N, Nankabirwa JI, Rek J, Jagannathan P, Arinaitwe E, Bousema T, Drakeley C, Murray M, Crawford E, Hathaway N, Staedke SG, Smith D, Rosenthal PJ, Kamya M, Dorsey G, Rodriguez-Barraquer I, Greenhouse B. PMID: 33107430; PMCID: PMC7591246.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansAnimals
    61. Malaria Transmission, Infection, and Disease following Sustained Indoor Residual Spraying of Insecticide in Tororo, Uganda. Am J Trop Med Hyg. 2020 10; 103(4):1525-1533. Nankabirwa JI, Arinaitwe E, Rek J, Kilama M, Kizza T, Staedke SG, Rosenthal PJ, Rodriguez-Barraquer I, Briggs J, Greenhouse B, Bousema T, Drakeley C, Roos DS, Tomko SS, Smith DL, Kamya MR, Dorsey G. PMID: 32700666; PMCID: PMC7543828.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansAnimalsPHPublic Health
    62. A systematic review of antibody mediated immunity to coronaviruses: kinetics, correlates of protection, and association with severity. Nat Commun. 2020 09 17; 11(1):4704. Huang AT, Garcia-Carreras B, Hitchings MDT, Yang B, Katzelnick LC, Rattigan SM, Borgert BA, Moreno CA, Solomon BD, Trimmer-Smith L, Etienne V, Rodriguez-Barraquer I, Lessler J, Salje H, Burke DS, Wesolowski A, Cummings DAT. PMID: 32943637; PMCID: PMC7499300.
      View in: PubMed   Mentions: 520     Fields:    Translation:HumansCellsPHPublic Health
    63. Heterogeneity of dengue transmission in an endemic area of Colombia. PLoS Negl Trop Dis. 2020 09; 14(9):e0008122. Estupiñán Cárdenas MI, Herrera VM, Miranda Montoya MC, Lozano Parra A, Zaraza Moncayo ZM, Flórez García JP, Rodríguez Barraquer I, Villar Centeno LÁ. PMID: 32925978; PMCID: PMC7571714.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    64. Universal PCR and antibody testing demonstrate little to no transmission of SARS-CoV-2 in a rural community. medRxiv. 2020 Aug 17. Appa A, Takahashi S, Rodriguez-Barraquer I, Chamie G, Sawyer A, Consortium C, Duarte E, Hakim J, Turcios K, Vinden J, Janson O, Manglik A, Peluso MJ, Deeks SG, Henrich TJ, Torres L, Rodgers M, Hackett J, Chiu C, Havlir D, Greenhouse B. PMID: 32839781; PMCID: PMC7444294.
      View in: PubMed   Mentions:
    65. Serology for SARS-CoV-2: Apprehensions, opportunities, and the path forward. Sci Immunol. 2020 05 19; 5(47). Bryant JE, Azman AS, Ferrari MJ, Arnold BF, Boni MF, Boum Y, Hayford K, Luquero FJ, Mina MJ, Rodriguez-Barraquer I, Wu JT, Wade D, Vernet G, Leung DT. PMID: 32430309.
      View in: PubMed   Mentions: 84     Fields:    Translation:HumansCellsPHPublic Health
    66. The Impact of Control Interventions on Malaria Burden in Young Children in a Historically High-Transmission District of Uganda: A Pooled Analysis of Cohort Studies from 2007 to 2018. Am J Trop Med Hyg. 2020 08; 103(2):785-792. Kamya MR, Kakuru A, Muhindo M, Arinaitwe E, Nankabirwa JI, Rek J, Bigira V, Kapisi J, Wanzira H, Achan J, Natureeba P, Gasasira A, Havlir D, Jagannathan P, Rosenthal PJ, Rodriguez-Barraquer I, Dorsey G. PMID: 32431280; PMCID: PMC7410449.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansPHPublic Health
    67. A systematic review of antibody mediated immunity to coronaviruses: antibody kinetics, correlates of protection, and association of antibody responses with severity of disease. medRxiv. 2020 Apr 17. Huang AT, Garcia-Carreras B, Hitchings MDT, Yang B, Katzelnick LC, Rattigan SM, Borgert BA, Moreno CA, Solomon BD, Rodriguez-Barraquer I, Lessler J, Salje H, Burke D, Wesolowski A, Cummings DAT. PMID: 32511434; PMCID: PMC7217088.
      View in: PubMed   Mentions:
    68. Rapid shifts in the age-specific burden of malaria following successful control interventions in four regions of Uganda. Malar J. 2020 Mar 30; 19(1):128. Kigozi SP, Kigozi RN, Epstein A, Mpimbaza A, Sserwanga A, Yeka A, Nankabirwa JI, Halliday K, Pullan RL, Rutazaana D, Sebuguzi CM, Opigo J, Kamya MR, Staedke SG, Dorsey G, Greenhouse B, Rodriguez-Barraquer I. PMID: 32228584; PMCID: PMC7106889.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansPHPublic Health
    69. Mapping global variation in dengue transmission intensity. Sci Transl Med. 2020 01 29; 12(528). Cattarino L, Rodriguez-Barraquer I, Imai N, Cummings DAT, Ferguson NM. PMID: 31996463.
      View in: PubMed   Mentions: 80     Fields:    
    70. Associations between red blood cell variants and malaria among children and adults from three areas of Uganda: a prospective cohort study. Malar J. 2020 Jan 15; 19(1):21. Kakande E, Greenhouse B, Bajunirwe F, Drakeley C, Nankabirwa JI, Walakira A, Nsobya SL, Katureebe A, Rek J, Arinaitwe E, Rosenthal PJ, Kamya MR, Dorsey G, Rodriguez-Barraquer I. PMID: 31941490; PMCID: PMC6964006.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    71. The Impact of Multiple Rounds of Indoor Residual Spraying on Malaria Incidence and Hemoglobin Levels in a High-Transmission Setting. J Infect Dis. 2020 01 02; 221(2):304-312. Zinszer K, Charland K, Vahey S, Jahagirdar D, Rek JC, Arinaitwe E, Nankabirwa J, Morrison K, Sadoine ML, Tutt-Guérette MA, Staedke SG, Kamya MR, Greenhouse B, Rodriguez-Barraquer I, Dorsey G. PMID: 31599325; PMCID: PMC6935997.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansPHPublic Health
    72. Impacts of Zika emergence in Latin America on endemic dengue transmission. Nat Commun. 2019 12 16; 10(1):5730. Borchering RK, Huang AT, Mier-Y-Teran-Romero L, Rojas DP, Rodriguez-Barraquer I, Katzelnick LC, Martinez SD, King GD, Cinkovich SC, Lessler J, Cummings DAT. PMID: 31844054; PMCID: PMC6915707.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansCellsPHPublic Health
    73. Pareto rules for malaria super-spreaders and super-spreading. Nat Commun. 2019 09 02; 10(1):3939. Cooper L, Kang SY, Bisanzio D, Maxwell K, Rodriguez-Barraquer I, Greenhouse B, Drakeley C, Arinaitwe E, G Staedke S, Gething PW, Eckhoff P, Reiner RC, Hay SI, Dorsey G, Kamya MR, Lindsay SW, Grenfell BT, Smith DL. PMID: 31477710; PMCID: PMC6718398.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansAnimalsPHPublic Health
    74. Serological inference of past primary and secondary dengue infection: implications for vaccination. J R Soc Interface. 2019 07 26; 16(156):20190207. Lam HM, Phuong HT, Thao Vy NH, Le Thanh NT, Dung PN, Ngoc Muon TT, Van Vinh Chau N, Rodríguez-Barraquer I, Cummings DAT, Wills BA, Boni MF, Rabaa MA, Clapham HE. PMID: 31362614; PMCID: PMC6685028.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansPHPublic Health
    75. Heterogeneous local dynamics revealed by classification analysis of spatially disaggregated time series data. Epidemics. 2019 12; 29:100357. Perkins TA, Rodriguez-Barraquer I, Manore C, Siraj AS, España G, Barker CM, Johansson MA, Reiner RC. PMID: 31607654.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCellsPHPublic Health
    76. Impact of Microscopic and Submicroscopic Parasitemia During Pregnancy on Placental Malaria in a High-Transmission Setting in Uganda. J Infect Dis. 2019 07 02; 220(3):457-466. Briggs J, Ategeka J, Kajubi R, Ochieng T, Kakuru A, Ssemanda C, Wasswa R, Jagannathan P, Greenhouse B, Rodriguez-Barraquer I, Kamya M, Dorsey G. PMID: 30891605; PMCID: PMC6941619.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimals
    77. Opportunities for improved surveillance and control of dengue from age-specific case data. Elife. 2019 05 23; 8. Rodriguez-Barraquer I, Salje H, Cummings DA. PMID: 31120419; PMCID: PMC6579519.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    78. Nationally-representative serostudy of dengue in Bangladesh allows generalizable disease burden estimates. Elife. 2019 04 08; 8. Salje H, Paul KK, Paul R, Rodriguez-Barraquer I, Rahman Z, Alam MS, Rahman M, Al-Amin HM, Heffelfinger J, Gurley E. PMID: 30958263; PMCID: PMC6513551.
      View in: PubMed   Mentions: 42     Fields:    Translation:Humans
    79. Persistent Parasitemia Despite Dramatic Reduction in Malaria Incidence After 3 Rounds of Indoor Residual Spraying in Tororo, Uganda. J Infect Dis. 2019 03 15; 219(7):1104-1111. Nankabirwa JI, Briggs J, Rek J, Arinaitwe E, Nayebare P, Katrak S, Staedke SG, Rosenthal PJ, Rodriguez-Barraquer I, Kamya MR, Dorsey G, Greenhouse B. PMID: 30383230; PMCID: PMC6420168.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansPHPublic Health
    80. Long-term circulation of Zika virus in Thailand: an observational study. Lancet Infect Dis. 2019 04; 19(4):439-446. Ruchusatsawat K, Wongjaroen P, Posanacharoen A, Rodriguez-Barraquer I, Sangkitporn S, Cummings DAT, Salje H. PMID: 30826189; PMCID: PMC6511259.
      View in: PubMed   Mentions: 63     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    81. Impact of preexisting dengue immunity on Zika virus emergence in a dengue endemic region. Science. 2019 02 08; 363(6427):607-610. Rodriguez-Barraquer I, Costa F, Nascimento EJM, Nery N, Castanha PMS, Sacramento GA, Cruz J, Carvalho M, De Olivera D, Hagan JE, Adhikarla H, Wunder EA, Coêlho DF, Azar SR, Rossi SL, Vasilakis N, Weaver SC, Ribeiro GS, Balmaseda A, Harris E, Nogueira ML, Reis MG, Marques ETA, Cummings DAT, Ko AI. PMID: 30733412; PMCID: PMC8221194.
      View in: PubMed   Mentions: 128     Fields:    Translation:HumansCellsPHPublic Health
    82. Dengue pre-vaccination screening and positive predictive values. Lancet Infect Dis. 2019 02; 19(2):132-134. Rodríguez-Barraquer I, Salje H, Cummings DA. PMID: 30712834.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansPHPublic Health
    83. 645: Revisiting the evidence underlying Zika travel restrictions: quantifying risk for pregnant travelers and their partners. American Journal of Obstetrics and Gynecology. 2019 Jan 1; 220(1):s428-s429. Kucirka KL, Rodriguez-Barraquer RI, Sheffield SJ, Lessler LJ. .
      View in: Publisher Site   Mentions:
    84. Heterogeneous exposure and hotspots for malaria vectors at three study sites in Uganda. Gates Open Res. 2018; 2:32. Kang SY, Battle KE, Gibson HS, Cooper LV, Maxwell K, Kamya M, Lindsay SW, Dorsey G, Greenhouse B, Rodriguez-Barraquer I, Reiner RCJ, Smith DL, Bisanzio D. PMID: 30706054; PMCID: PMC6350504.
      View in: PubMed   Mentions: 12     Fields:    
    85. Taking Sharper Pictures of Malaria with CAMERAs: Combined Antibodies to Measure Exposure Recency Assays. Am J Trop Med Hyg. 2018 11; 99(5):1120-1127. Greenhouse B, Smith DL, Rodríguez-Barraquer I, Mueller I, Drakeley CJ. PMID: 30298804; PMCID: PMC6221205.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimals
    86. Viridot: An automated virus plaque (immunofocus) counter for the measurement of serological neutralizing responses with application to dengue virus. PLoS Negl Trop Dis. 2018 10; 12(10):e0006862. Katzelnick LC, Coello Escoto A, McElvany BD, Chávez C, Salje H, Luo W, Rodriguez-Barraquer I, Jarman R, Durbin AP, Diehl SA, Smith DJ, Whitehead SS, Cummings DAT. PMID: 30356267; PMCID: PMC6226209.
      View in: PubMed   Mentions: 55     Fields:    Translation:HumansCells
    87. Dynamics and determinants of the force of infection of dengue virus from 1994 to 2015 in Managua, Nicaragua. Proc Natl Acad Sci U S A. 2018 10 16; 115(42):10762-10767. Katzelnick LC, Ben-Shachar R, Mercado JC, Rodriguez-Barraquer I, Elizondo D, Arguello S, Nuñez A, Ojeda S, Sanchez N, Lopez Mercado B, Gresh L, Burger-Calderon R, Kuan G, Gordon A, Balmaseda A, Harris E. PMID: 30266790; PMCID: PMC6196493.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCellsPHPublic Health
    88. Quantification of anti-parasite and anti-disease immunity to malaria as a function of age and exposure. Elife. 2018 07 25; 7. Rodriguez-Barraquer I, Arinaitwe E, Jagannathan P, Kamya MR, Rosenthal PJ, Rek J, Dorsey G, Nankabirwa J, Staedke SG, Kilama M, Drakeley C, Ssewanyana I, Smith DL, Greenhouse B. PMID: 30044224; PMCID: PMC6103767.
      View in: PubMed   Mentions: 72     Fields:    Translation:HumansAnimals
    89. Dihydroartemisinin-piperaquine for intermittent preventive treatment of malaria during pregnancy and risk of malaria in early childhood: A randomized controlled trial. PLoS Med. 2018 07; 15(7):e1002606. Jagannathan P, Kakuru A, Okiring J, Muhindo MK, Natureeba P, Nakalembe M, Opira B, Olwoch P, Nankya F, Ssewanyana I, Tetteh K, Drakeley C, Beeson J, Reiling L, Clark TD, Rodriguez-Barraquer I, Greenhouse B, Wallender E, Aweeka F, Prahl M, Charlebois ED, Feeney ME, Havlir DV, Kamya MR, Dorsey G. PMID: 30016328; PMCID: PMC6049882.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansPHPublic Health
    90. Reconstruction of antibody dynamics and infection histories to evaluate dengue risk. Nature. 2018 05; 557(7707):719-723. Salje H, Cummings DAT, Rodriguez-Barraquer I, Katzelnick LC, Lessler J, Klungthong C, Thaisomboonsuk B, Nisalak A, Weg A, Ellison D, Macareo L, Yoon IK, Jarman R, Thomas S, Rothman AL, Endy T, Cauchemez S. PMID: 29795354; PMCID: PMC6064976.
      View in: PubMed   Mentions: 154     Fields:    Translation:Humans
    91. Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia. Sci Data. 2018 04 24; 5:180073. Siraj AS, Rodriguez-Barraquer I, Barker CM, Tejedor-Garavito N, Harding D, Lorton C, Lukacevic D, Oates G, Espana G, Kraemer MUG, Manore C, Johansson MA, Tatem AJ, Reiner RC, Perkins TA. PMID: 29688216; PMCID: PMC5914286.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCellsPHPublic Health
    92. Heterogeneous exposure and hotspots for malaria vectors at three study sites in Uganda. Gates Open Research. 2018 Jan 1; 2:32. Kang KS, Battle BK, Gibson GH, Cooper CL, Maxwell MK, Kamya KM, Lindsay LS, Dorsey DG, Greenhouse GB, Rodriguez-Barraquer RI, Reiner RR, Smith SD, Bisanzio BD. .
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    93. High Hepatitis E Seroprevalence Among Displaced Persons in South Sudan. Am J Trop Med Hyg. 2017 Jun; 96(6):1296-1301. Azman AS, Bouhenia M, Iyer AS, Rumunu J, Laku RL, Wamala JF, Rodriguez-Barraquer I, Lessler J, Gignoux E, Luquero FJ, Leung DT, Gurley ES, Ciglenecki I. PMID: 28719276; PMCID: PMC5462562.
      View in: PubMed   Mentions: 10     Fields:    
    94. Impact of interventions and the incidence of ebola virus disease in Liberia-implications for future epidemics. Health Policy Plan. 2017 03 01; 32(2):205-214. Kirsch TD, Moseson H, Massaquoi M, Nyenswah TG, Goodermote R, Rodriguez-Barraquer I, Lessler J, Cumings DA, Peters DH. PMID: 28207062; PMCID: PMC6279138.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansPHPublic Health
    95. The Long-Term Safety, Public Health Impact, and Cost-Effectiveness of Routine Vaccination with a Recombinant, Live-Attenuated Dengue Vaccine (Dengvaxia): A Model Comparison Study. PLoS Med. 2016 Nov; 13(11):e1002181. Flasche S, Jit M, Rodríguez-Barraquer I, Coudeville L, Recker M, Koelle K, Milne G, Hladish TJ, Perkins TA, Cummings DA, Dorigatti I, Laydon DJ, España G, Kelso J, Longini I, Lourenco J, Pearson CA, Reiner RC, Mier-Y-Terán-Romero L, Vannice K, Ferguson N. PMID: 27898668; PMCID: PMC5127514.
      View in: PubMed   Mentions: 79     Fields:    
    96. Impact of interventions and the incidence of ebola virus disease in Liberia-implications for future epidemics. Health Policy Plan. 2016 Oct 29. Kirsch TD, Moseson H, Massaquoi M, Nyenswah TG, Goodermote R, Rodriguez-Barraquer I, Lessler J, Cumings D, Peters DH. PMID: 27794520.
      View in: PubMed   Mentions:
    97. Benefits and risks of the Sanofi-Pasteur dengue vaccine: Modeling optimal deployment. Science. 2016 09 02; 353(6303):1033-1036. Ferguson NM, Rodríguez-Barraquer I, Dorigatti I, Mier-Y-Teran-Romero L, Laydon DJ, Cummings DA. PMID: 27701113; PMCID: PMC5268127.
      View in: PubMed   Mentions: 96     Fields:    
    98. Erratum to: Trends in the Mechanistic and Dynamic Modeling of Infectious Diseases. Current Epidemiology Reports. 2016 Sep 1; 3(3):223-224. Lessler LJ, Azman AA, Grabowski GM, Salje SH, Rodriguez-Barraquer RI. .
      View in: Publisher Site   Mentions:
    99. Quantifying Heterogeneous Malaria Exposure and Clinical Protection in a Cohort of Ugandan Children. J Infect Dis. 2016 10 01; 214(7):1072-80. Rodriguez-Barraquer I, Arinaitwe E, Jagannathan P, Boyle MJ, Tappero J, Muhindo M, Kamya MR, Dorsey G, Drakeley C, Ssewanyana I, Smith DL, Greenhouse B. PMID: 27481862; PMCID: PMC5021229.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimals
    100. Assessing the global threat from Zika virus. Science. 2016 Aug 12; 353(6300):aaf8160. Lessler J, Chaisson LH, Kucirka LM, Bi Q, Grantz K, Salje H, Carcelen AC, Ott CT, Sheffield JS, Ferguson NM, Cummings DA, Metcalf CJ, Rodriguez-Barraquer I. PMID: 27417495; PMCID: PMC5467639.
      View in: PubMed   Mentions: 177     Fields:    
    101. Trends in the Mechanistic and Dynamic Modeling of Infectious Diseases. Curr Epidemiol Rep. 2016; 3(3):212-222. Lessler J, Azman AS, Grabowski MK, Salje H, Rodriguez-Barraquer I. PMID: 32226711; PMCID: PMC7100697.
      View in: PubMed   Mentions: 13  
    102. Predicting intensities of Zika infection and microcephaly using transmission intensities of other arboviruses. Bulletin of the World Health Organization. 2016 May 18. Rodríguez-Barraquer RI, Salje SH, Lessler LJ, Cummings CD. .
      View in: Publisher Site   Mentions:
    103. Dependability of results in conference abstracts of randomized controlled trials in ophthalmology and author financial conflicts of interest as a factor associated with full publication. Trials. 2016 Apr 26; 17(1):213. Saldanha IJ, Scherer RW, Rodriguez-Barraquer I, Jampel HD, Dickersin K. PMID: 27113767; PMCID: PMC4845343.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    104. Dengue Vaccine in Regions of Endemic Disease. N Engl J Med. 2016 04 07; 374(14):1388. Rodriguez-Barraquer I, Salje H, Cummings DA. PMID: 27050220.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    105. Chapter 18 Viral Epidemiology Tracking Viruses with Smartphones and Social Media. Viral Pathogenesis. 2016 Jan 1; 241-252. Rainwater-Lovett RK, Rodriguez-Barraquer RI, Moss MW. .
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    106. Dengue Virus (DENV) Neutralizing Antibody Kinetics in Children After Symptomatic Primary and Postprimary DENV Infection. J Infect Dis. 2016 May 01; 213(9):1428-35. Clapham HE, Rodriguez-Barraquer I, Azman AS, Althouse BM, Salje H, Gibbons RV, Rothman AL, Jarman RG, Nisalak A, Thaisomboonsuk B, Kalayanarooj S, Nimmannitya S, Vaughn DW, Green S, Yoon IK, Cummings DA. PMID: 26704615; PMCID: PMC4813744.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCells
    107. Enhancing disease surveillance with novel data streams: challenges and opportunities. EPJ Data Sci. 2015; 4. Althouse BM, Scarpino SV, Meyers LA, Ayers JW, Bargsten M, Baumbach J, Brownstein JS, Castro L, Clapham H, Cummings DA, Del Valle S, Eubank S, Fairchild G, Finelli L, Generous N, George D, Harper DR, Hébert-Dufresne L, Johansson MA, Konty K, Lipsitch M, Milinovich G, Miller JD, Nsoesie EO, Olson DR, Paul M, Polgreen PM, Priedhorsky R, Read JM, Rodríguez-Barraquer I, Smith DJ, Stefansen C, Swerdlow DL, Thompson D, Vespignani A, Wesolowski A. PMID: 27990325; PMCID: PMC5156315.
      View in: PubMed   Mentions: 76  
    108. Reconstruction of 60 Years of Chikungunya Epidemiology in the Philippines Demonstrates Episodic and Focal Transmission. J Infect Dis. 2016 Feb 15; 213(4):604-10. Salje H, Cauchemez S, Alera MT, Rodriguez-Barraquer I, Thaisomboonsuk B, Srikiatkhachorn A, Lago CB, Villa D, Klungthong C, Tac-An IA, Fernandez S, Velasco JM, Roque VG, Nisalak A, Macareo LR, Levy JW, Cummings D, Yoon IK. PMID: 26410592; PMCID: PMC4721913.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansPHPublic Health
    109. The Hidden Burden of Dengue and Chikungunya in Chennai, India. PLoS Negl Trop Dis. 2015; 9(7):e0003906. Rodríguez-Barraquer I, Solomon SS, Kuganantham P, Srikrishnan AK, Vasudevan CK, Iqbal SH, Balakrishnan P, Solomon S, Mehta SH, Cummings DA. PMID: 26181441; PMCID: PMC4504702.
      View in: PubMed   Mentions: 36     Fields:    Translation:Humans
    110. Differential efficacy of dengue vaccine by immune status. Lancet. 2015 May 02; 385(9979):1726. Rodriguez-Barraquer I, Mier-Y-Teran-Romero L, Ferguson N, Burke DS, Cummings DAT. PMID: 25943936.
      View in: PubMed   Mentions: 8     Fields:    
    111. Robust, reproducible, industrialized, standard membrane feeding assay for assessing the transmission blocking activity of vaccines and drugs against Plasmodium falciparum. Malar J. 2015 Apr 09; 14:150. Li T, Eappen AG, Richman AM, Billingsley PF, Abebe Y, Li M, Padilla D, Rodriguez-Barraquer I, Sim BK, Hoffman SL. PMID: 25890243; PMCID: PMC4491417.
      View in: PubMed   Mentions: 12     Fields:    Translation:Animals
    112. Estimating Potential Incidence of MERS-CoV Associated with Hajj Pilgrims to Saudi Arabia, 2014. PLoS Curr. 2014 Nov 24; 6. Lessler J, Rodriguez-Barraquer I, Cummings DA, Garske T, Van Kerkhove M, Mills H, Truelove S, Hakeem R, Albarrak A, Ferguson NM, MERS-CoV Scenario Modeling Working Group, MERS-CoV Scenario Modeling Working Group. PMID: 25685624; PMCID: PMC4323406.
      View in: PubMed   Mentions: 23  
    113. Variability in dengue titer estimates from plaque reduction neutralization tests poses a challenge to epidemiological studies and vaccine development. PLoS Negl Trop Dis. 2014 Jun; 8(6):e2952. Salje H, Rodríguez-Barraquer I, Rainwater-Lovett K, Nisalak A, Thaisomboonsuk B, Thomas SJ, Fernandez S, Jarman RG, Yoon IK, Cummings DA. PMID: 24967885; PMCID: PMC4072537.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimalsCells
    114. A review of transmission models of dengue: a quantitative and qualitative analysis of model features. Dengue and dengue hemorrhagic fever. 2014 Jan 1; 99-114. Perkins PT, Reiner RR, Rodriguez-Barraquer RI, Smith SD, Scott ST, Cummings CD. .
      View in: Publisher Site   Mentions:
    115. Potential opportunities and perils of imperfect dengue vaccines. Vaccine. 2014 Jan 16; 32(4):514-20. Rodriguez-Barraquer I, Mier-y-Teran-Romero L, Schwartz IB, Burke DS, Cummings DA. PMID: 24269318; PMCID: PMC4142437.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    116. Revisiting Rayong: shifting seroprofiles of dengue in Thailand and their implications for transmission and control. Am J Epidemiol. 2014 Feb 01; 179(3):353-60. Rodríguez-Barraquer I, Buathong R, Iamsirithaworn S, Nisalak A, Lessler J, Jarman RG, Gibbons RV, Cummings DA. PMID: 24197388; PMCID: PMC3895094.
      View in: PubMed   Mentions: 56     Fields:    Translation:HumansCellsPHPublic Health
    117. Challenges in the interpretation of dengue vaccine trial results. PLoS Negl Trop Dis. 2013; 7(8):e2126. Rodriguez-Barraquer I, Mier-y-Teran-Romero L, Burke DS, Cummings DA. PMID: 24009782; PMCID: PMC3757058.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    118. Variation in dengue virus plaque reduction neutralization testing: systematic review and pooled analysis. BMC Infect Dis. 2012 Sep 28; 12:233. Rainwater-Lovett K, Rodriguez-Barraquer I, Cummings DA, Lessler J. PMID: 23020074; PMCID: PMC3519720.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    119. Noninferiority of miltefosine versus meglumine antimoniate for cutaneous leishmaniasis in children. J Infect Dis. 2012 Feb 15; 205(4):684-92. Rubiano LC, Miranda MC, Muvdi Arenas S, Montero LM, Rodríguez-Barraquer I, Garcerant D, Prager M, Osorio L, Rojas MX, Pérez M, Nicholls RS, Gore Saravia N. PMID: 22238470; PMCID: PMC3266136.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansAnimals
    120. From re-emergence to hyperendemicity: the natural history of the dengue epidemic in Brazil. PLoS Negl Trop Dis. 2011 Jan 04; 5(1):e935. Rodriguez-Barraquer I, Cordeiro MT, Braga C, de Souza WV, Marques ET, Cummings DA. PMID: 21245922; PMCID: PMC3014978.
      View in: PubMed   Mentions: 71     Fields:    Translation:HumansCellsPHPublic Health
    121. Etiologic agent of an epidemic of cutaneous leishmaniasis in Tolima, Colombia. Am J Trop Med Hyg. 2008 Feb; 78(2):276-82. Rodríguez-Barraquer I, Góngora R, Prager M, Pacheco R, Montero LM, Navas A, Ferro C, Miranda MC, Saravia NG. PMID: 18256429.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimalsPHPublic Health
    122. Tensile bond strength and SEM evaluation of caries-affected dentin using dentin adhesives. J Dent Res. 1995 Oct; 74(10):1679-88. Nakajima M, Sano H, Burrow MF, Tagami J, Yoshiyama M, Ebisu S, Ciucchi B, Russell CM, Pashley DH. PMID: 7499591.
      View in: PubMed   Mentions: 30     Fields:    Translation:Humans
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