Justin Eyquem, PhD, MS

Title(s)Assistant Professor, Medicine
SchoolSchool of Medicine
Address513 Parnassus Avenue, HSW, #901G
San Francisco CA 94143
Phone415-514-1746
ORCID ORCID Icon0000-0001-8262-1190 Additional info
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    Collapse Biography 
    Collapse Education and Training
    MSKCC, NY01/2019Postdoc in T cell engineering
    University Paris Diderot, ParisPhD02/2014Immunology
    University Paris Diderot, ParisMS06/2010Genetics
    AgroParisTech, ParisMS06/2010BioEngineering
    University Bordeaux, BordeauxBS06/2006Biology

    Collapse Overview 
    Collapse Overview
    Adoptive T cell therapy, in which antigen-specific T cells are generated ex vivo and transferred back into patients, is a promising strategy to treat cancer. Although CD19-targeting chimeric antigen receptor (CAR) T cells have shown remarkable results against acute lymphoblastic leukemia (ALL), many aspects of this technology remain to be improved. Regarding the therapeutic challenges, relapses have been observed in a large proportion of patients, many whose tumors expressed very low levels of target antigen. Second, clinical results remain poor in solid tumors, notably due to the lack of ideal targets, inefficient homing to the tumor site, limited T cell persistence and T cell dysfunction. Third, CAR therapies have been associated with toxicities, such as cytokine release syndrome (CRS) or cerebral edema. On the manufacturing side, the wide implementation of T cell therapy is limited by the use of randomly integrating vectors in autologous patient cells, which involves high cost and unavoidably a high variability of the final product.

    Our laboratory is aimed at understanding the current limitations of CAR T cell therapy using innovative tumor models and functional genomics and overcoming these challenges by reprogramming T cells with the use of genome editing and synthetic receptors.

    Active projects:

    1) High Throughput Tool Development for Accelerated CAR Engineering
    Recent studies have determined that not all CARs are created equal in terms of effector function, persistence, and antigen sensitivity. Our laboratory has developed powerful T cell editing tools which allow for high throughput screening of CAR constructs, as well as discovery of new CAR architectures with augmented effector functions, persistence and sensitivity to antigen density

    2) Immunobiology of CAR T Cells in Solid Tumors
    CAR T cells have shown poor therapeutic efficacy in solid tumors. To understand the challenges CAR T cells are facing in solid tumors we need mouse models that effectively recapitulate the complexities of the tumor microenvironment. Our lab is developing improved mouse models to investigate the interaction of CAR T cells with the different components of the solid tumor microenvironment and to identify mechanisms by which solid tumors induce dysfunction in CAR T cells.

    3) Improvement of Gene-Edited Immune Cell Manufacturing for Clinical Trials
    As immunotherapeutic strategies move toward more complex engineering and multiplexed editing, there is a growing need to optimize the manufacturing of CAR-engineered cells for the clinic. Our laboratory is focused on bolstering the efficiency of CAR T cell enrichment, improving the precision of T cell editing using novel tools developed in the lab. Finally, we are expanding our technologies to other immune cells and are optimizing gene editing protocols and CAR designs for NK cells.

    Collapse ORNG Applications 
    Collapse Featured Publications

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Author Correction: Generation of T-cell-receptor-negative CD8αβ-positive CAR T cells from T-cell-derived induced pluripotent stem cells. Nat Biomed Eng. 2024 Feb 12. van der Stegen SJC, Lindenbergh PL, Petrovic RM, Xie H, Diop MP, Alexeeva V, Shi Y, Mansilla-Soto J, Hamieh M, Eyquem J, Cabriolu A, Wang X, Abujarour R, Lee T, Clarke R, Valamehr B, Themeli M, Riviere I, Sadelain M. PMID: 38347164.
      View in: PubMed   Mentions:    Fields:    
    2. Ultra-high efficiency T cell reprogramming at multiple loci with SEED-Selection. bioRxiv. 2024 Feb 07. Chang CR, Vykunta VS, Goodman DB, Muldoon JJ, Nyberg WA, Liu C, Allain V, Rothrock A, Wang CH, Marson A, Shy BR, Eyquem J. PMID: 38370809; PMCID: PMC10871224.
      View in: PubMed   Mentions:
    3. Base-editing mutagenesis maps alleles to tune human T cell functions. Nature. 2024 Jan; 625(7996):805-812. Schmidt R, Ward CC, Dajani R, Armour-Garb Z, Ota M, Allain V, Hernandez R, Layeghi M, Xing G, Goudy L, Dorovskyi D, Wang C, Chen YY, Ye CJ, Shy BR, Gilbert LA, Eyquem J, Pritchard JK, Dodgson SE, Marson A. PMID: 38093011.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    4. Structural surfaceomics reveals an AML-specific conformation of integrin β2 as a CAR T cellular therapy target. Nat Cancer. 2023 Nov; 4(11):1592-1609. Mandal K, Wicaksono G, Yu C, Adams JJ, Hoopmann MR, Temple WC, Izgutdina A, Escobar BP, Gorelik M, Ihling CH, Nix MA, Naik A, Xie WH, Hübner J, Rollins LA, Reid SM, Ramos E, Kasap C, Steri V, Serrano JAC, Salangsang F, Phojanakong P, McMillan M, Gavallos V, Leavitt AD, Logan AC, Rooney CM, Eyquem J, Sinz A, Huang BJ, Stieglitz E, Smith CC, Moritz RL, Sidhu SS, Huang L, Wiita AP. PMID: 37904046; PMCID: PMC10663162.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    5. Mitigation of chromosome loss in clinical CRISPR-Cas9-engineered T cells. Cell. 2023 10 12; 186(21):4567-4582.e20. Tsuchida CA, Brandes N, Bueno R, Trinidad M, Mazumder T, Yu B, Hwang B, Chang C, Liu J, Sun Y, Hopkins CR, Parker KR, Qi Y, Hofman L, Satpathy AT, Stadtmauer EA, Cate JHD, Eyquem J, Fraietta JA, June CH, Chang HY, Ye CJ, Doudna JA. PMID: 37794590; PMCID: PMC10664023.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    6. Modular pooled discovery of synthetic knockin sequences to program durable cell therapies. Cell. 2023 09 14; 186(19):4216-4234.e33. Blaeschke F, Chen YY, Apathy R, Daniel B, Chen AY, Chen PA, Sandor K, Zhang W, Li Z, Mowery CT, Yamamoto TN, Nyberg WA, To A, Yu R, Bueno R, Kim MC, Schmidt R, Goodman DB, Feuchtinger T, Eyquem J, Jimmie Ye C, Carnevale J, Satpathy AT, Shifrut E, Roth TL, Marson A. PMID: 37714135; PMCID: PMC10508323.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    7. Novel extragenic genomic safe harbors for precise therapeutic T-cell engineering. Blood. 2023 06 01; 141(22):2698-2712. Odak A, Yuan H, Feucht J, Cantu VA, Mansilla-Soto J, Kogel F, Eyquem J, Everett J, Bushman FD, Leslie CS, Sadelain M. PMID: 36745870; PMCID: PMC10273162.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    8. Peptide-mediated delivery of CRISPR enzymes for the efficient editing of primary human lymphocytes. Nat Biomed Eng. 2023 05; 7(5):647-660. Foss DV, Muldoon JJ, Nguyen DN, Carr D, Sahu SU, Hunsinger JM, Wyman SK, Krishnappa N, Mendonsa R, Schanzer EV, Shy BR, Vykunta VS, Allain V, Li Z, Marson A, Eyquem J, Wilson RC. PMID: 37147433; PMCID: PMC10129304.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    9. Mitigation of chromosome loss in clinical CRISPR-Cas9-engineered T cells. bioRxiv. 2023 Mar 22. Tsuchida CA, Brandes N, Bueno R, Trinidad M, Mazumder T, Yu B, Hwang B, Chang C, Liu J, Sun Y, Hopkins CR, Parker KR, Qi Y, Satpathy AT, Stadtmauer EA, Cate JHD, Eyquem J, Fraietta JA, June CH, Chang HY, Ye CJ, Doudna JA. PMID: 36993359; PMCID: PMC10055432.
      View in: PubMed   Mentions:
    10. An evolved AAV variant enables efficient genetic engineering of murine T cells. Cell. 2023 01 19; 186(2):446-460.e19. Nyberg WA, Ark J, To A, Clouden S, Reeder G, Muldoon JJ, Chung JY, Xie WH, Allain V, Steinhart Z, Chang C, Talbot A, Kim S, Rosales A, Havlik LP, Pimentel H, Asokan A, Eyquem J. PMID: 36638795; PMCID: PMC10540678.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    11. Pooled screening of CAR T cells identifies diverse immune signaling domains for next-generation immunotherapies. Sci Transl Med. 2022 11 09; 14(670):eabm1463. Goodman DB, Azimi CS, Kearns K, Talbot A, Garakani K, Garcia J, Patel N, Hwang B, Lee D, Park E, Vykunta VS, Shy BR, Ye CJ, Eyquem J, Marson A, Bluestone JA, Roybal KT. PMID: 36350984; PMCID: PMC9939256.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    12. NUDT21 limits CD19 levels through alternative mRNA polyadenylation in B cell acute lymphoblastic leukemia. Nat Immunol. 2022 10; 23(10):1424-1432. Witkowski MT, Lee S, Wang E, Lee AK, Talbot A, Ma C, Tsopoulidis N, Brumbaugh J, Zhao Y, Roberts KG, Hogg SJ, Nomikou S, Ghebrechristos YE, Thandapani P, Mullighan CG, Hochedlinger K, Chen W, Abdel-Wahab O, Eyquem J, Aifantis I. PMID: 36138187; PMCID: PMC9611506.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    13. High-yield genome engineering in primary cells using a hybrid ssDNA repair template and small-molecule cocktails. Nat Biotechnol. 2023 04; 41(4):521-531. Shy BR, Vykunta VS, Ha A, Talbot A, Roth TL, Nguyen DN, Pfeifer WG, Chen YY, Blaeschke F, Shifrut E, Vedova S, Mamedov MR, Chung JJ, Li H, Yu R, Wu D, Wolf J, Martin TG, Castro CE, Ye L, Esensten JH, Eyquem J, Marson A. PMID: 36008610; PMCID: PMC10065198.
      View in: PubMed   Mentions: 41     Fields:    Translation:HumansCells
    14. RASA2 ablation in T cells boosts antigen sensitivity and long-term function. Nature. 2022 09; 609(7925):174-182. Carnevale J, Shifrut E, Kale N, Nyberg WA, Blaeschke F, Chen YY, Li Z, Bapat SP, Diolaiti ME, O'Leary P, Vedova S, Belk J, Daniel B, Roth TL, Bachl S, Anido AA, Prinzing B, Ibañez-Vega J, Lange S, Haydar D, Luetke-Eversloh M, Born-Bony M, Hegde B, Kogan S, Feuchtinger T, Okada H, Satpathy AT, Shannon K, Gottschalk S, Eyquem J, Krenciute G, Ashworth A, Marson A. PMID: 36002574; PMCID: PMC9433322.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansAnimalsCells
    15. Generation of T-cell-receptor-negative CD8αβ-positive CAR T cells from T-cell-derived induced pluripotent stem cells. Nat Biomed Eng. 2022 11; 6(11):1284-1297. van der Stegen SJC, Lindenbergh PL, Petrovic RM, Xie H, Diop MP, Alexeeva V, Shi Y, Mansilla-Soto J, Hamieh M, Eyquem J, Cabriolu A, Wang X, Abujarour R, Lee T, Clarke R, Valamehr B, Themeli M, Riviere I, Sadelain M. PMID: 35941192; PMCID: PMC9669107.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimalsCells
    16. The surfaceome of multiple myeloma cells suggests potential immunotherapeutic strategies and protein markers of drug resistance. Nat Commun. 2022 07 15; 13(1):4121. Ferguson ID, Patiño-Escobar B, Tuomivaara ST, Lin YT, Nix MA, Leung KK, Kasap C, Ramos E, Nieves Vasquez W, Talbot A, Hale M, Naik A, Kishishita A, Choudhry P, Lopez-Girona A, Miao W, Wong SW, Wolf JL, Martin TG, Shah N, Vandenberg S, Prakash S, Besse L, Driessen C, Posey AD, Mullins RD, Eyquem J, Wells JA, Wiita AP. PMID: 35840578; PMCID: PMC9287322.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    17. HLA-independent T cell receptors for targeting tumors with low antigen density. Nat Med. 2022 02; 28(2):345-352. Mansilla-Soto J, Eyquem J, Haubner S, Hamieh M, Feucht J, Paillon N, Zucchetti AE, Li Z, Sjöstrand M, Lindenbergh PL, Saetersmoen M, Dobrin A, Maurin M, Iyer A, Garcia Angus A, Miele MM, Zhao Z, Giavridis T, van der Stegen SJC, Tamzalit F, Rivière I, Huse M, Hendrickson RC, Hivroz C, Sadelain M. PMID: 35027758; PMCID: PMC9469647.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansAnimals
    18. The CD28-Transmembrane Domain Mediates Chimeric Antigen Receptor Heterodimerization With CD28. Front Immunol. 2021; 12:639818. Muller YD, Nguyen DP, Ferreira LMR, Ho P, Raffin C, Valencia RVB, Congrave-Wilson Z, Roth TL, Eyquem J, Van Gool F, Marson A, Perez L, Wells JA, Bluestone JA, Tang Q. PMID: 33833759; PMCID: PMC8021955.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansCells
    19. CAR T cell trogocytosis and cooperative killing regulate tumour antigen escape. Nature. 2019 04; 568(7750):112-116. Hamieh M, Dobrin A, Cabriolu A, van der Stegen SJC, Giavridis T, Mansilla-Soto J, Eyquem J, Zhao Z, Whitlock BM, Miele MM, Li Z, Cunanan KM, Huse M, Hendrickson RC, Wang X, Rivière I, Sadelain M. PMID: 30918399; PMCID: PMC6707377.
      View in: PubMed   Mentions: 248     Fields:    Translation:AnimalsCells
    20. Publisher Correction: Calibration of CAR activation potential directs alternative T cell fates and therapeutic potency. Nat Med. 2019 Mar; 25(3):530. Feucht J, Sun J, Eyquem J, Ho YJ, Zhao Z, Leibold J, Dobrin A, Cabriolu A, Hamieh M, Sadelain M. PMID: 30692700.
      View in: PubMed   Mentions: 5     Fields:    
    21. Calibration of CAR activation potential directs alternative T cell fates and therapeutic potency. Nat Med. 2019 01; 25(1):82-88. Feucht J, Sun J, Eyquem J, Ho YJ, Zhao Z, Leibold J, Dobrin A, Cabriolu A, Hamieh M, Sadelain M. PMID: 30559421; PMCID: PMC6532069.
      View in: PubMed   Mentions: 211     Fields:    Translation:AnimalsCells
    22. Low-Dose Radiation Conditioning Enables CAR T Cells to Mitigate Antigen Escape. Mol Ther. 2018 11 07; 26(11):2542-2552. DeSelm C, Palomba ML, Yahalom J, Hamieh M, Eyquem J, Rajasekhar VK, Sadelain M. PMID: 30415658; PMCID: PMC6225039.
      View in: PubMed   Mentions: 108     Fields:    Translation:HumansAnimalsCells
    23. Antibody with Infinite Affinity for In Vivo Tracking of Genetically Engineered Lymphocytes. J Nucl Med. 2018 12; 59(12):1894-1900. Krebs S, Ahad A, Carter LM, Eyquem J, Brand C, Bell M, Ponomarev V, Reiner T, Meares CF, Gottschalk S, Sadelain M, Larson SM, Weber WA. PMID: 29903928; PMCID: PMC6278895.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimalsCells
    24. CAR T cell-induced cytokine release syndrome is mediated by macrophages and abated by IL-1 blockade. Nat Med. 2018 06; 24(6):731-738. Giavridis T, van der Stegen SJC, Eyquem J, Hamieh M, Piersigilli A, Sadelain M. PMID: 29808005; PMCID: PMC6410714.
      View in: PubMed   Mentions: 525     Fields:    Translation:HumansAnimalsCells
    25. Integrating Proteomics and Transcriptomics for Systematic Combinatorial Chimeric Antigen Receptor Therapy of AML. Cancer Cell. 2017 10 09; 32(4):506-519.e5. Perna F, Berman SH, Soni RK, Mansilla-Soto J, Eyquem J, Hamieh M, Hendrickson RC, Brennan CW, Sadelain M. PMID: 29017060; PMCID: PMC7025434.
      View in: PubMed   Mentions: 149     Fields:    Translation:HumansCells
    26. Targeting a CAR to the TRAC locus with CRISPR/Cas9 enhances tumour rejection. Nature. 2017 03 02; 543(7643):113-117. Eyquem J, Mansilla-Soto J, Giavridis T, van der Stegen SJ, Hamieh M, Cunanan KM, Odak A, Gönen M, Sadelain M. PMID: 28225754; PMCID: PMC5558614.
      View in: PubMed   Mentions: 757     Fields:    Translation:HumansAnimalsCells
    27. Multiplex Genome-Edited T-cell Manufacturing Platform for "Off-the-Shelf" Adoptive T-cell Immunotherapies. Cancer Res. 2015 Sep 15; 75(18):3853-64. Poirot L, Philip B, Schiffer-Mannioui C, Le Clerre D, Chion-Sotinel I, Derniame S, Potrel P, Bas C, Lemaire L, Galetto R, Lebuhotel C, Eyquem J, Cheung GW, Duclert A, Gouble A, Arnould S, Peggs K, Pule M, Scharenberg AM, Smith J. PMID: 26183927.
      View in: PubMed   Mentions: 277     Fields:    Translation:HumansAnimalsCells
    28. A platform for rapid prototyping of synthetic gene networks in mammalian cells. Nucleic Acids Res. 2014 Dec 01; 42(21):13440-51. Duportet X, Wroblewska L, Guye P, Li Y, Eyquem J, Rieders J, Rimchala T, Batt G, Weiss R. PMID: 25378321; PMCID: PMC4245948.
      View in: PubMed   Mentions: 54     Fields:    Translation:HumansAnimalsCells
    29. Characterization of three loci for homologous gene targeting and transgene expression. Biotechnol Bioeng. 2013 Aug; 110(8):2225-35. Eyquem J, Poirot L, Galetto R, Scharenberg AM, Smith J. PMID: 23475535.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
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