Stathis Gennatas, MBBS, PhD

Title(s)Assistant Professor, Epidemiology & Biostatistics
SchoolSchool of Medicine
Address550 16th Street, #2530
San Francisco CA 94158
PronounsHe/Him/His
ORCID ORCID Icon0000-0001-9280-3609 Additional info
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    Collapse Biography 
    Collapse Education and Training
    Imperial College London, London, UKMBBS06/2008Medicine
    University of Pennsylvania, Philadelphia, PAPhD06/2017Neuroscience
    University of California, San Francisco, CA2022Diversity, Equity, and Inclusion Champion Training

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    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Tumor Morphology for Prediction of Poor Responses Early in Neoadjuvant Chemotherapy for Breast Cancer: A Multicenter Retrospective Study. Tomography. 2024 Nov 20; 10(11):1832-1845. Li W, Le NN, Nadkarni R, Onishi N, Wilmes LJ, Gibbs JE, Price ER, Joe BN, Mukhtar RA, Gennatas ED, Kornak J, Magbanua MJM, Van't Veer LJ, LeStage B, Esserman LJ, Hylton NM. PMID: 39590943; PMCID: PMC11598075.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    2. Predicting the Effect of Proton Beam Therapy Technology on Pulmonary Toxicities for Patients With Locally Advanced Lung Cancer Enrolled in the Proton Collaborative Group Prospective Clinical Trial. Int J Radiat Oncol Biol Phys. 2024 May 01; 119(1):66-77. Valdes G, Scholey J, Nano TF, Gennatas ED, Mohindra P, Mohammed N, Zeng J, Kotecha R, Rosen LR, Chang J, Tsai HK, Urbanic JJ, Vargas CE, Yu NY, Ungar LH, Eaton E, Simone CB. PMID: 38000701.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    3. Predictors of All-Cause 30-Day Readmissions in Patients with Heart Failure at an Urban Safety Net Hospital: The Importance of Social Determinants of Health and Mental Health. Am J Med Open. 2023 Dec; 10:100060. Steverson AB, Marano PJ, Chen C, Ma Y, Stern RJ, Feng J, Gennatas ED, Marks JD, Durstenfeld MS, Davis JD, Hsue PY, Zier LS. PMID: 39035237; PMCID: PMC11256223.
      View in: PubMed   Mentions:
    4. Predicting post-liver transplant outcomes in patients with acute-on-chronic liver failure using Expert-Augmented Machine Learning. Am J Transplant. 2023 12; 23(12):1908-1921. Ge J, Digitale JC, Fenton C, McCulloch CE, Lai JC, Pletcher MJ, Gennatas ED. PMID: 37652176; PMCID: PMC11018271.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    5. Association of SARS-CoV-2 nucleocapsid viral antigen and the receptor for advanced glycation end products with development of severe disease in patients presenting to the emergency department with COVID-19. Front Immunol. 2023; 14:1130821. Matthay ZA, Fields AT, Wick KD, Jones C, Lane HC, Herrera K, Nuñez-Garcia B, Gennatas E, Hendrickson CM, Kornblith AE, Matthay MA, Kornblith LZ, COVID-19 Associated Coagulopathy Inflammation Thrombosis (Co-ACIT) Study Group. PMID: 37026003; PMCID: PMC10070743.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    6. The Conditional Super Learner. IEEE Trans Pattern Anal Mach Intell. 2022 Dec; 44(12):10236-10243. Valdes G, Interian Y, Gennatas E, Van der Laan M. PMID: 34851823.
      View in: PubMed   Mentions: 1     Fields:    
    7. Representational Gradient Boosting: Backpropagation in the Space of Functions. IEEE Trans Pattern Anal Mach Intell. 2022 12; 44(12):10186-10195. Valdes G, Friedman JH, Jiang F, Gennatas ED. PMID: 34941500.
      View in: PubMed   Mentions:    Fields:    
    8. Underinsurance And Multiple Surgical Treatments for Kidney Stones. Urology. 2023 02; 172:61-68. Bayne D, Hicks CR, Srirangapatanam S, Armas-Phan M, Maru J, Gennatas E, Allen IE, Seligman H, Stoller M, Suskind A, Chi TL. PMID: 36170903; PMCID: PMC9925403.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    9. Serine, N-acetylaspartate differentiate adolescents with juvenile idiopathic arthritis compared with healthy controls: a metabolomics cross-sectional study. Pediatr Rheumatol Online J. 2022 Feb 10; 20(1):12. Lewis KA, Osier N, Carrasco R, Chiou J, Carter P, Garcia A, Flowers E, Gennatas ED, Nguyen C, Rana A, Brown SA, Tiziani S. PMID: 35144633; PMCID: PMC8832851.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    10. Effectiveness of Adding a Mask Recommendation to Other Public Health Measures. Ann Intern Med. 2021 08; 174(8):1193. Spinelli MA, Glidden DV, Gennatas ED, Rutherford GW, Gandhi M. PMID: 34399080.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    11. Importance of non-pharmaceutical interventions in lowering the viral inoculum to reduce susceptibility to infection by SARS-CoV-2 and potentially disease severity. Lancet Infect Dis. 2021 09; 21(9):e296-e301. Spinelli MA, Glidden DV, Gennatas ED, Bielecki M, Beyrer C, Rutherford G, Chambers H, Goosby E, Gandhi M. PMID: 33631099; PMCID: PMC7906703.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansCellsPHPublic Health
    12. Structural and Functional Brain Parameters Related to Cognitive Performance Across Development: Replication and Extension of the Parieto-Frontal Integration Theory in a Single Sample. Cereb Cortex. 2021 02 05; 31(3):1444-1463. Gur RC, Butler ER, Moore TM, Rosen AFG, Ruparel K, Satterthwaite TD, Roalf DR, Gennatas ED, Bilker WB, Shinohara RT, Port A, Elliott MA, Verma R, Davatzikos C, Wolf DH, Detre JA, Gur RE. PMID: 33119049; PMCID: PMC7869090.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    13. Reply to Nock and Nielsen: On the work of Nock and Nielsen and its relationship to the additive tree. Proc Natl Acad Sci U S A. 2020 04 21; 117(16):8694-8695. Valdes G, Luna JM, Gennatas ED, Ungar LH, Eaton E, Diffenderfer ES, Jensen ST, Simone CB, Friedman JH, Solberg TD. PMID: 32265277; PMCID: PMC7183189.
      View in: PubMed   Mentions:    Fields:    
    14. Expert-augmented machine learning. Proc Natl Acad Sci U S A. 2020 03 03; 117(9):4571-4577. Gennatas ED, Friedman JH, Ungar LH, Pirracchio R, Eaton E, Reichmann LG, Interian Y, Luna JM, Simone CB, Auerbach A, Delgado E, van der Laan MJ, Solberg TD, Valdes G. PMID: 32071251; PMCID: PMC7060733.
      View in: PubMed   Mentions: 30     Fields:    
    15. Building more accurate decision trees with the additive tree. Proc Natl Acad Sci U S A. 2019 10 01; 116(40):19887-19893. Luna JM, Gennatas ED, Ungar LH, Eaton E, Diffenderfer ES, Jensen ST, Simone CB, Friedman JH, Solberg TD, Valdes G. PMID: 31527280; PMCID: PMC6778203.
      View in: PubMed   Mentions: 14     Fields:    
    16. Integrated models incorporating radiologic and radiomic features predict meningioma grade, local failure, and overall survival. Neurooncol Adv. 2019 May-Dec; 1(1):vdz011. Morin O, Chen WC, Nassiri F, Susko M, Magill ST, Vasudevan HN, Wu A, Vallières M, Gennatas ED, Valdes G, Pekmezci M, Alcaide-Leon P, Choudhury A, Interian Y, Mortezavi S, Turgutlu K, Bush NAO, Solberg TD, Braunstein SE, Sneed PK, Perry A, Zadeh G, McDermott MW, Villanueva-Meyer JE, Raleigh DR. PMID: 31608329; PMCID: PMC6777505.
      View in: PubMed   Mentions: 51  
    17. Dopamine receptor D4 (DRD4) polymorphisms with reduced functional potency intensify atrophy in syndrome-specific sites of frontotemporal dementia. Neuroimage Clin. 2019; 23:101822. Butler PM, Chiong W, Perry DC, Miller ZA, Gennatas ED, Brown JA, Pasquini L, Karydas A, Dokuru D, Coppola G, Sturm VE, Boxer AL, Gorno-Tempini ML, Rosen HJ, Kramer JH, Miller BL, Seeley WW. PMID: 31003069; PMCID: PMC6475809.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    18. Preoperative and postoperative prediction of long-term meningioma outcomes. PLoS One. 2018; 13(9):e0204161. Gennatas ED, Wu A, Braunstein SE, Morin O, Chen WC, Magill ST, Gopinath C, Villaneueva-Meyer JE, Perry A, McDermott MW, Solberg TD, Valdes G, Raleigh DR. PMID: 30235308; PMCID: PMC6147484.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    19. Deep nets vs expert designed features in medical physics: An IMRT QA case study. Med Phys. 2018 Jun; 45(6):2672-2680. Interian Y, Rideout V, Kearney VP, Gennatas E, Morin O, Cheung J, Solberg T, Valdes G. PMID: 29603278.
      View in: PubMed   Mentions: 32     Fields:    Translation:Humans
    20. Quantitative assessment of structural image quality. Neuroimage. 2018 04 01; 169:407-418. Rosen AFG, Roalf DR, Ruparel K, Blake J, Seelaus K, Villa LP, Ciric R, Cook PA, Davatzikos C, Elliott MA, Garcia de La Garza A, Gennatas ED, Quarmley M, Schmitt JE, Shinohara RT, Tisdall MD, Craddock RC, Gur RE, Gur RC, Satterthwaite TD. PMID: 29278774; PMCID: PMC5856621.
      View in: PubMed   Mentions: 165     Fields:    Translation:Humans
    21. Sex differences in estimated brain metabolism in relation to body growth through adolescence. J Cereb Blood Flow Metab. 2019 03; 39(3):524-535. Vandekar SN, Shou H, Satterthwaite TD, Shinohara RT, Merikangas AK, Roalf DR, Ruparel K, Rosen A, Gennatas ED, Elliott MA, Davatzikos C, Gur RC, Gur RE, Detre JA. PMID: 29072856; PMCID: PMC6421255.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    22. Age-Related Effects and Sex Differences in Gray Matter Density, Volume, Mass, and Cortical Thickness from Childhood to Young Adulthood. J Neurosci. 2017 05 17; 37(20):5065-5073. Gennatas ED, Avants BB, Wolf DH, Satterthwaite TD, Ruparel K, Ciric R, Hakonarson H, Gur RE, Gur RC. PMID: 28432144; PMCID: PMC5444192.
      View in: PubMed   Mentions: 142     Fields:    Translation:Humans
    23. Patterns of Individual Variation in Visual Pathway Structure and Function in the Sighted and Blind. PLoS One. 2016; 11(11):e0164677. Aguirre GK, Datta R, Benson NC, Prasad S, Jacobson SG, Cideciyan AV, Bridge H, Watkins KE, Butt OH, Dain AS, Brandes L, Gennatas ED. PMID: 27812129; PMCID: PMC5094697.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    24. Elevated Amygdala Perfusion Mediates Developmental Sex Differences in Trait Anxiety. Biol Psychiatry. 2016 11 15; 80(10):775-785. Kaczkurkin AN, Moore TM, Ruparel K, Ciric R, Calkins ME, Shinohara RT, Elliott MA, Hopson R, Roalf DR, Vandekar SN, Gennatas ED, Wolf DH, Scott JC, Pine DS, Leibenluft E, Detre JA, Foa EB, Gur RE, Gur RC, Satterthwaite TD. PMID: 27395327; PMCID: PMC5074881.
      View in: PubMed   Mentions: 26     Fields:    Translation:Humans
    25. Dominant hemisphere lateralization of cortical parasympathetic control as revealed by frontotemporal dementia. Proc Natl Acad Sci U S A. 2016 Apr 26; 113(17):E2430-9. Guo CC, Sturm VE, Zhou J, Gennatas ED, Trujillo AJ, Hua AY, Crawford R, Stables L, Kramer JH, Rankin K, Levenson RW, Rosen HJ, Miller BL, Seeley WW. PMID: 27071080; PMCID: PMC4855566.
      View in: PubMed   Mentions: 50     Fields:    Translation:Humans
    26. Common and Dissociable Mechanisms of Executive System Dysfunction Across Psychiatric Disorders in Youth. Am J Psychiatry. 2016 05 01; 173(5):517-26. Shanmugan S, Wolf DH, Calkins ME, Moore TM, Ruparel K, Hopson RD, Vandekar SN, Roalf DR, Elliott MA, Jackson C, Gennatas ED, Leibenluft E, Pine DS, Shinohara RT, Hakonarson H, Gur RC, Gur RE, Satterthwaite TD. PMID: 26806874; PMCID: PMC4886342.
      View in: PubMed   Mentions: 115     Fields:    Translation:Humans
    27. The impact of quality assurance assessment on diffusion tensor imaging outcomes in a large-scale population-based cohort. Neuroimage. 2016 Jan 15; 125:903-919. Roalf DR, Quarmley M, Elliott MA, Satterthwaite TD, Vandekar SN, Ruparel K, Gennatas ED, Calkins ME, Moore TM, Hopson R, Prabhakaran K, Jackson CT, Verma R, Hakonarson H, Gur RC, Gur RE. PMID: 26520775; PMCID: PMC4753778.
      View in: PubMed   Mentions: 127     Fields:    Translation:Humans
    28. Connectome-wide network analysis of youth with Psychosis-Spectrum symptoms. Mol Psychiatry. 2015 Dec; 20(12):1508-15. Satterthwaite TD, Vandekar SN, Wolf DH, Bassett DS, Ruparel K, Shehzad Z, Craddock RC, Shinohara RT, Moore TM, Gennatas ED, Jackson C, Roalf DR, Milham MP, Calkins ME, Hakonarson H, Gur RC, Gur RE. PMID: 26033240; PMCID: PMC4651819.
      View in: PubMed   Mentions: 66     Fields:    Translation:Humans
    29. Impact of puberty on the evolution of cerebral perfusion during adolescence. Proc Natl Acad Sci U S A. 2014 Jun 10; 111(23):8643-8. Satterthwaite TD, Shinohara RT, Wolf DH, Hopson RD, Elliott MA, Vandekar SN, Ruparel K, Calkins ME, Roalf DR, Gennatas ED, Jackson C, Erus G, Prabhakaran K, Davatzikos C, Detre JA, Hakonarson H, Gur RC, Gur RE. PMID: 24912164; PMCID: PMC4060665.
      View in: PubMed   Mentions: 112     Fields:    Translation:Humans
    30. Linked Sex Differences in Cognition and Functional Connectivity in Youth. Cereb Cortex. 2015 Sep; 25(9):2383-94. Satterthwaite TD, Wolf DH, Roalf DR, Ruparel K, Erus G, Vandekar S, Gennatas ED, Elliott MA, Smith A, Hakonarson H, Verma R, Davatzikos C, Gur RE, Gur RC. PMID: 24646613; PMCID: PMC4537416.
      View in: PubMed   Mentions: 162     Fields:    Translation:Humans
    31. Functional maturation of the executive system during adolescence. J Neurosci. 2013 Oct 09; 33(41):16249-61. Satterthwaite TD, Wolf DH, Erus G, Ruparel K, Elliott MA, Gennatas ED, Hopson R, Jackson C, Prabhakaran K, Bilker WB, Calkins ME, Loughead J, Smith A, Roalf DR, Hakonarson H, Verma R, Davatzikos C, Gur RC, Gur RE. PMID: 24107956; PMCID: PMC3792462.
      View in: PubMed   Mentions: 139     Fields:    Translation:Humans
    32. Heterogeneous impact of motion on fundamental patterns of developmental changes in functional connectivity during youth. Neuroimage. 2013 Dec; 83:45-57. Satterthwaite TD, Wolf DH, Ruparel K, Erus G, Elliott MA, Eickhoff SB, Gennatas ED, Jackson C, Prabhakaran K, Smith A, Hakonarson H, Verma R, Davatzikos C, Gur RE, Gur RC. PMID: 23792981; PMCID: PMC3874413.
      View in: PubMed   Mentions: 150     Fields:    Translation:Humans
    33. Intrinsic connectivity network disruption in progressive supranuclear palsy. Ann Neurol. 2013 May; 73(5):603-16. Gardner RC, Boxer AL, Trujillo A, Mirsky JB, Guo CC, Gennatas ED, Heuer HW, Fine E, Zhou J, Kramer JH, Miller BL, Seeley WW. PMID: 23536287; PMCID: PMC3732833.
      View in: PubMed   Mentions: 55     Fields:    Translation:Humans
    34. COMT Val158Met genotype influences neurodegeneration within dopamine-innervated brain structures. Neurology. 2012 May 22; 78(21):1663-9. Gennatas ED, Cholfin JA, Zhou J, Crawford RK, Sasaki DA, Karydas A, Boxer AL, Bonasera SJ, Rankin KP, Gorno-Tempini ML, Rosen HJ, Kramer JH, Weiner M, Miller BL, Seeley WW. PMID: 22573634; PMCID: PMC3359506.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    35. Predicting regional neurodegeneration from the healthy brain functional connectome. Neuron. 2012 Mar 22; 73(6):1216-27. Zhou J, Gennatas ED, Kramer JH, Miller BL, Seeley WW. PMID: 22445348; PMCID: PMC3361461.
      View in: PubMed   Mentions: 367     Fields:    Translation:Humans
    36. TDP-43 subtypes are associated with distinct atrophy patterns in frontotemporal dementia. Neurology. 2010 Dec 14; 75(24):2204-11. Rohrer JD, Geser F, Zhou J, Gennatas ED, Sidhu M, Trojanowski JQ, Dearmond SJ, Miller BL, Seeley WW. PMID: 21172843; PMCID: PMC3013589.
      View in: PubMed   Mentions: 95     Fields:    Translation:HumansCells
    37. Network-level structural covariance in the developing brain. Proc Natl Acad Sci U S A. 2010 Oct 19; 107(42):18191-6. Zielinski BA, Gennatas ED, Zhou J, Seeley WW. PMID: 20921389; PMCID: PMC2964249.
      View in: PubMed   Mentions: 214     Fields:    Translation:Humans
    38. Divergent network connectivity changes in behavioural variant frontotemporal dementia and Alzheimer's disease. Brain. 2010 May; 133(Pt 5):1352-67. Zhou J, Greicius MD, Gennatas ED, Growdon ME, Jang JY, Rabinovici GD, Kramer JH, Weiner M, Miller BL, Seeley WW. PMID: 20410145; PMCID: PMC2912696.
      View in: PubMed   Mentions: 500     Fields:    Translation:Humans
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