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Walter Eckalbar, PhD

Title(s)Assistant Professor, Medicine
SchoolSchool of Medicine
Address555 Mission Bay Blvd South
San Francisco CA 94158
Phone415-514-4372
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    Collapse Research 
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    Genetic variation impacting the airway smooth muscle in children with asthma
    NIH/NHLBI R00HL135403Sep 1, 2017 - Nov 30, 2022
    Role: Principal Investigator
    Genetic variation impacting the airway smooth muscle in children with asthma
    NIH/NHLBI K99HL135403Sep 1, 2017 - Aug 31, 2019
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. A defect in COPI-mediated transport of STING causes immune dysregulation in COPA syndrome. J Exp Med. 2020 Nov 02; 217(11). Deng Z, Chong Z, Law CS, Mukai K, Ho FO, Martinu T, Backes BJ, Eckalbar WL, Taguchi T, Shum AK. PMID: 32725126.
      View in: PubMed   Mentions: 1     Fields:    
    2. Whole-Genome Sequencing Identifies Novel Functional Loci Associated with Lung Function in Puerto Rican Youth. Am J Respir Crit Care Med. 2020 10 01; 202(7):962-972. Lee EY, Mak ACY, Hu D, Sajuthi S, White MJ, Keys KL, Eckalbar W, Bonser L, Huntsman S, Urbanek C, Eng C, Jain D, Abecasis G, Kang HM, Germer S, Zody MC, Nickerson DA, Erle D, Ziv E, Rodriguez-Santana J, Seibold MA, Burchard EG. PMID: 32459537.
      View in: PubMed   Mentions: 1     Fields:    
    3. On the cross-population generalizability of gene expression prediction models. PLoS Genet. 2020 08; 16(8):e1008927. Keys KL, Mak ACY, White MJ, Eckalbar WL, Dahl AW, Mefford J, Mikhaylova AV, Contreras MG, Elhawary JR, Eng C, Hu D, Huntsman S, Oh SS, Salazar S, Lenoir MA, Ye JC, Thornton TA, Zaitlen N, Burchard EG, Gignoux CR. PMID: 32797036.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    4. Noncoding SNPs associated with increased GDF15 levels located in a metformin-activated enhancer region upstream of GDF15. Pharmacogenomics. 2020 06; 21(8):509-520. Linhares ND, Pereira DA, Conceição IM, Franco GR, Eckalbar WL, Ahituv N, Luizon MR. PMID: 32427048.
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    5. Comparative Genomic Characterization of the Multimammate Mouse Mastomys coucha. Mol Biol Evol. 2019 12 01; 36(12):2805-2812. Hardin A, Nevonen KA, Eckalbar WL, Carbone L, Ahituv N. PMID: 31424545.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    6. CRISPR-mediated activation of a promoter or enhancer rescues obesity caused by haploinsufficiency. . 2019 Sep 12. Matharu N, Rattanasopha S, Tamura S, Maliskova L, Wang Y, Bernard A, Hardin A, Eckalbar WL, Vaisse C, Ahituv N. .
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    7. Cell fate analysis in fetal mouse lung reveals distinct pathways for TI and TII cell development. Am J Physiol Lung Cell Mol Physiol. 2019 11 01; 317(5):L653-L666. Gonzalez R, Leaffer D, Chapin C, Gillespie AM, Eckalbar W, Dobbs L. PMID: 31432712.
      View in: PubMed   Mentions:
    8. Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards. Nat Ecol Evol. 2019 08; 3(8):1241-1252. Lind AL, Lai YYY, Mostovoy Y, Holloway AK, Iannucci A, Mak ACY, Fondi M, Orlandini V, Eckalbar WL, Milan M, Rovatsos M, Kichigin IG, Makunin AI, Johnson Pokorná M, Altmanová M, Trifonov VA, Schijlen E, Kratochvíl L, Fani R, Velenský P, Rehák I, Patarnello T, Jessop TS, Hicks JW, Ryder OA, Mendelson JR, Ciofi C, Kwok PY, Pollard KS, Bruneau BG. PMID: 31358948.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    9. The epigenetic regulator ATF7ip inhibits Il2 expression, regulating Th17 responses. J Exp Med. 2019 09 02; 216(9):2024-2037. Sin JH, Zuckerman C, Cortez JT, Eckalbar WL, Erle DJ, Anderson MS, Waterfield MR. PMID: 31217192.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    10. Singling out Th2 cells in eosinophilic esophagitis. J Clin Invest. 2019 04 08; 129(5):1830-1832. Eckalbar WL, Erle DJ. PMID: 30958801.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    11. Genomic and epigenomic mapping of leptin-responsive neuronal populations involved in body weight regulation. Nat Metab. 2019 Apr; 1(4):475-484. Inoue F, Eckalbar WL, Wang Y, Murphy KK, Matharu N, Vaisse C, Ahituv N. PMID: 31535083.
      View in: PubMed   Mentions:
    12. Abstract TP130: Transcriptome Analysis of Mononuclear Cell Responses After Ischemic Stroke in Type 2 Diabetic Mice. Stroke. 2019 Feb 1; 50(Suppl_1). Shunsuke Omodaka, Atsushi Kanoke, Christine Hsieh, Walter L Eckalbar, Jialing Liu. .
      View in: Publisher Site   Mentions:
    13. CRISPR-mediated activation of a promoter or enhancer rescues obesity caused by haploinsufficiency. Science. 2019 01 18; 363(6424). Matharu N, Rattanasopha S, Tamura S, Maliskova L, Wang Y, Bernard A, Hardin A, Eckalbar WL, Vaisse C, Ahituv N. PMID: 30545847.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    14. Integrative approach identifies corticosteroid response variant in diverse populations with asthma. J Allergy Clin Immunol. 2019 05; 143(5):1791-1802. Levin AM, Gui H, Hernandez-Pacheco N, Yang M, Xiao S, Yang JJ, Hochstadt S, Barczak AJ, Eckalbar WL, Rynkowski D, Samedy LA, Kwok PY, Pino-Yanes M, Erle DJ, Lanfear DE, Burchard EG, Williams LK. PMID: 30367910.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    15. Tissue signals imprint ILC2 identity with anticipatory function. Nat Immunol. 2018 10; 19(10):1093-1099. Ricardo-Gonzalez RR, Van Dyken SJ, Schneider C, Lee J, Nussbaum JC, Liang HE, Vaka D, Eckalbar WL, Molofsky AB, Erle DJ, Locksley RM. PMID: 30201992.
      View in: PubMed   Mentions: 42     Fields:    Translation:AnimalsCells
    16. Whole-Genome Sequencing of Pharmacogenetic Drug Response in Racially Diverse Children with Asthma. Am J Respir Crit Care Med. 2018 06 15; 197(12):1552-1564. Mak ACY, White MJ, Eckalbar WL, Szpiech ZA, Oh SS, Pino-Yanes M, Hu D, Goddard P, Huntsman S, Galanter J, Wu AC, Himes BE, Germer S, Vogel JM, Bunting KL, Eng C, Salazar S, Keys KL, Liberto J, Nuckton TJ, Nguyen TA, Torgerson DG, Kwok PY, Levin AM, Celedón JC, Forno E, Hakonarson H, Sleiman PM, Dahlin A, Tantisira KG, Weiss ST, Serebrisky D, Brigino-Buenaventura E, Farber HJ, Meade K, Lenoir MA, Avila PC, Sen S, Thyne SM, Rodriguez-Cintron W, Winkler CA, Moreno-Estrada A, Sandoval K, Rodriguez-Santana JR, Kumar R, Williams LK, Ahituv N, Ziv E, Seibold MA, Darnell RB, Zaitlen N, Hernandez RD, Burchard EG. PMID: 29509491.
      View in: PubMed   Mentions: 22     Fields:    Translation:Humans
    17. Complementarity between term-time forcing and delayed vaccination response in explaining irregular dynamics in childhood diseases. Ricerche di Matematica. 2018 Jun 1; 67(1):175-204. John C. Eckalbar, Walter L. Eckalbar. .
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    18. Comparative Genomics Reveals Accelerated Evolution in Conserved Pathways during the Diversification of Anole Lizards. Genome Biol Evol. 2018 02 01; 10(2):489-506. Tollis M, Hutchins ED, Stapley J, Rupp SM, Eckalbar WL, Maayan I, Lasku E, Infante CR, Dennis SR, Robertson JA, May CM, Crusoe MR, Bermingham E, DeNardo DF, Hsieh ST, Kulathinal RJ, McMillan WO, Menke DB, Pratt SC, Rawls JA, Sanjur O, Wilson-Rawls J, Wilson Sayres MA, Fisher RE, Kusumi K. PMID: 29360978.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    19. Use antibiotics in cell culture with caution: genome-wide identification of antibiotic-induced changes in gene expression and regulation. Sci Rep. 2017 08 08; 7(1):7533. Ryu AH, Eckalbar WL, Kreimer A, Yosef N, Ahituv N. PMID: 28790348.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    20. Corrigendum to "Dynamics of an SIR model with vaccination dependent on past prevalence with high order distributed delay" [BioSystems 129 (2015) 50-65]. Biosystems. 2017 01; 151:53. Eckalbar JC, Eckalbar WL. PMID: 27939914.
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    21. Genomic Characterization of Metformin Hepatic Response. PLoS Genet. 2016 Nov; 12(11):e1006449. Luizon MR, Eckalbar WL, Wang Y, Jones SL, Smith RP, Laurance M, Lin L, Gallins PJ, Etheridge AS, Wright F, Zhou Y, Molony C, Innocenti F, Yee SW, Giacomini KM, Ahituv N. PMID: 27902686.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    22. Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis. BMC Genomics. 2016 05 05; 17:339. Hutchins ED, Eckalbar WL, Wolter JM, Mangone M, Kusumi K. PMID: 27150582.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    23. Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus. PLoS Genet. 2016 Mar; 12(3):e1005738. Booker BM, Friedrich T, Mason MK, VanderMeer JE, Zhao J, Eckalbar WL, Logan M, Illing N, Pollard KS, Ahituv N. PMID: 27019019.
      View in: PubMed   Mentions: 12     Fields:    Translation:Animals
    24. Transcriptomic and epigenomic characterization of the developing bat wing. Nat Genet. 2016 05; 48(5):528-36. Eckalbar WL, Schlebusch SA, Mason MK, Gill Z, Parker AV, Booker BM, Nishizaki S, Muswamba-Nday C, Terhune E, Nevonen KA, Makki N, Friedrich T, VanderMeer JE, Pollard KS, Carbone L, Wall JD, Illing N, Ahituv N. PMID: 27019111.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    25. A genome-wide association study identifies four novel susceptibility loci underlying inguinal hernia. Nat Commun. 2015 Dec 21; 6:10130. Jorgenson E, Makki N, Shen L, Chen DC, Tian C, Eckalbar WL, Hinds D, Ahituv N, Avins A. PMID: 26686553.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimals
    26. DYNAMICS IN AN SIR MODEL WHEN VACCINATION DEMAND FOLLOWS PRIOR LEVELS OF DISEASE PREVALENCE. Advances in Complex Systems. 2015 Nov 1; 18(07n08):1550021. JOHN C. ECKALBAR, PETE TSOURNOS, WALTER L. ECKALBAR. .
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    27. Integrated Transcriptomic, Proteomic, and MicroRNA Data Identify Key Regulators of Developmental and Repair Processes During Tail Regeneration in the Green Anole Lizard. The FASEB Journal. 2015 Apr 1; 29. Elizabeth Hutchins, Walter Eckalbar, Ken Pendarvis, Fiona McCarthy, Douglas Lake, Kenro Kusumi. .
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    28. A PAX1 enhancer locus is associated with susceptibility to idiopathic scoliosis in females. Nat Commun. 2015 Mar 18; 6:6452. Sharma S, Londono D, Eckalbar WL, Gao X, Zhang D, Mauldin K, Kou I, Takahashi A, Matsumoto M, Kamiya N, Murphy KK, Cornelia R, Herring JA, Burns D, Ahituv N, Ikegawa S, Gordon D, Wise CA. PMID: 25784220.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansAnimalsCells
    29. Dynamics of an SIR model with vaccination dependent on past prevalence with high-order distributed delay. Biosystems. 2015 Mar; 129:50-65. Eckalbar JC, Eckalbar WL. PMID: 25555542.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansPHPublic Health
    30. Genome-wide discovery of drug-dependent human liver regulatory elements. PLoS Genet. 2014 Oct; 10(10):e1004648. Smith RP, Eckalbar WL, Morrissey KM, Luizon MR, Hoffmann TJ, Sun X, Jones SL, Force Aldred S, Ramamoorthy A, Desta Z, Liu Y, Skaar TC, Trinklein ND, Giacomini KM, Ahituv N. PMID: 25275310.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCells
    31. Genome-wide distribution of Auts2 binding localizes with active neurodevelopmental genes. Transl Psychiatry. 2014 Sep 02; 4:e431. Oksenberg N, Haliburton GD, Eckalbar WL, Oren I, Nishizaki S, Murphy K, Pollard KS, Birnbaum RY, Ahituv N. PMID: 25180570.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    32. Transcriptomic analysis of tail regeneration in the lizard Anolis carolinensis reveals activation of conserved vertebrate developmental and repair mechanisms. PLoS One. 2014; 9(8):e105004. Hutchins ED, Markov GJ, Eckalbar WL, George RM, King JM, Tokuyama MA, Geiger LA, Emmert N, Ammar MJ, Allen AN, Siniard AL, Corneveaux JJ, Fisher RE, Wade J, DeNardo DF, Rawls JA, Huentelman MJ, Wilson-Rawls J, Kusumi K. PMID: 25140675.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    33. Activation of musculoskeletal development and repair mechanisms in the regenerating lizard tail (344.7). The FASEB Journal. 2014 Apr 1; 28. Elizabeth Hutchins, Minami Tokuyama, Walter Eckalbar, Rebecca Fisher, Alan Rawls, Jeanne Wilson-Rawls, Kenro Kusumi. .
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    34. A large-scale view of the evolution of amniote development: insights from somitogenesis in reptiles. Curr Opin Genet Dev. 2013 Aug; 23(4):491-7. Kusumi K, May CM, Eckalbar WL. PMID: 23499412.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    35. Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes. BMC Genomics. 2013 Jan 23; 14:49. Eckalbar WL, Hutchins ED, Markov GJ, Allen AN, Corneveaux JJ, Lindblad-Toh K, Di Palma F, Alföldi J, Huentelman MJ, Kusumi K. PMID: 23343042.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansAnimals
    36. Scoliosis and segmentation defects of the vertebrae. Wiley Interdiscip Rev Dev Biol. 2012 May-Jun; 1(3):401-23. Eckalbar WL, Fisher RE, Rawls A, Kusumi K. PMID: 23801490.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    37. Somitogenesis in the anole lizard and alligator reveals evolutionary convergence and divergence in the amniote segmentation clock. Dev Biol. 2012 Mar 01; 363(1):308-19. Eckalbar WL, Lasku E, Infante CR, Elsey RM, Markov GJ, Allen AN, Corneveaux JJ, Losos JB, DeNardo DF, Huentelman MJ, Wilson-Rawls J, Rawls A, Kusumi K. PMID: 22178152.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    38. Major shifts in the evolution of somitogenesis: The reptile Anolis carolinensis represents a fourth type of segmentation clock among vertebrates. Developmental Biology. 2011 Aug 1; 356(1):254. Walter Eckalbar, Eris Lasku, Carlos Infante, Dale DeNardo, Jonathan Losos, Alan Rawls, Jeanne Wilson-Rawls, Kenro Kusumi. .
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    39. Dynamics of an epidemic model with quadratic treatment. Nonlinear Analysis Real World Applications. 2011 Feb 1; 12(1):320-332. John C. Eckalbar, Walter L. Eckalbar. .
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    40. Developmental gene activation in tail regeneration in the lizard, Anolis carolinensis. Developmental Biology. 2010 Aug 1; 344(1):519-520. Glenn J. Markov, Rajani George, Nataliya Emmert, Michael Ammar, Walter L. Eckalbar, Juli Wade, Dale DeNardo, Alan Rawls, Jeanne Wilson-Rawls, Kenro Kusumi. .
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    41. Identification of a divergent notch pathway delta ligand in the segmentation clock of the reptile, Anolis carolinensis. Developmental Biology. 2010 Aug 1; 344(1):528. Walter L. Eckalbar, Carlos Infante, Nataliya Emmert, Jonathan Losos, Alan Rawls, Jeanne Wilson-Rawls, Kenro Kusumi. .
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    42. Genetic Regulation of Somite and Early Spinal Patterning. The Genetics and Development of Scoliosis. 2010 Jan 1; 1-20. Kenro Kusumi, Walter Eckalbar, Olivier Pourquié. .
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    43. How many genes are part of the oscillatory network regulating somitogenesis? Developmental analysis and mathematical modeling of genes identified in functional genomic screens. Developmental Biology. 2009 Jul 1; 331(2):466. Walter Eckalbar, Will Sewell, Allanceson Smith, Eric Huynh, Joshua Gibson, Jeanne Wilson-Rawls, Michael Caplan, Kenro Kusumi. .
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