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Walter Eckalbar, PhD

Title(s)Assistant Professor, Medicine
SchoolSchool of Medicine
Phone415-514-4372
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    Collapse Research 
    Collapse Research Activities and Funding
    Genetic variation impacting the airway smooth muscle in children with asthma
    NIH/NHLBI R00HL135403Sep 1, 2017 - Nov 30, 2022
    Role: Principal Investigator
    Genetic variation impacting the airway smooth muscle in children with asthma
    NIH/NHLBI K99HL135403Sep 1, 2017 - Aug 31, 2019
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Hardin A, Nevonen KA, Eckalbar WL, Carbone L, Ahituv N. Comparative Genomic Characterization of the Multimammate Mouse Mastomys coucha. Mol Biol Evol. 2019 12 01; 36(12):2805-2812. PMID: 31424545.
      View in: PubMed
    2. Gonzalez R, Leaffer D, Chapin C, Gillespie AM, Eckalbar W, Dobbs L. Cell fate analysis in fetal mouse lung reveals distinct pathways for TI and TII cell development. Am J Physiol Lung Cell Mol Physiol. 2019 Nov 01; 317(5):L653-L666. PMID: 31432712.
      View in: PubMed
    3. Lind AL, Lai YYY, Mostovoy Y, Holloway AK, Iannucci A, Mak ACY, Fondi M, Orlandini V, Eckalbar WL, Milan M, Rovatsos M, Kichigin IG, Makunin AI, Johnson Pokorná M, Altmanová M, Trifonov VA, Schijlen E, Kratochvíl L, Fani R, Velenský P, Rehák I, Patarnello T, Jessop TS, Hicks JW, Ryder OA, Mendelson JR, Ciofi C, Kwok PY, Pollard KS, Bruneau BG. Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards. Nat Ecol Evol. 2019 08; 3(8):1241-1252. PMID: 31358948.
      View in: PubMed
    4. Sin JH, Zuckerman C, Cortez JT, Eckalbar WL, Erle DJ, Anderson MS, Waterfield MR. The epigenetic regulator ATF7ip inhibits Il2 expression, regulating Th17 responses. J Exp Med. 2019 Sep 02; 216(9):2024-2037. PMID: 31217192.
      View in: PubMed
    5. Eckalbar WL, Erle DJ. Singling out Th2 cells in eosinophilic esophagitis. J Clin Invest. 2019 04 08; 129(5):1830-1832. PMID: 30958801.
      View in: PubMed
    6. Inoue F, Eckalbar WL, Wang Y, Murphy KK, Matharu N, Vaisse C, Ahituv N. Genomic and epigenomic mapping of leptin-responsive neuronal populations involved in body weight regulation. Nat Metab. 2019 Apr; 1(4):475-484. PMID: 31535083.
      View in: PubMed
    7. Shunsuke Omodaka, Atsushi Kanoke, Christine Hsieh, Walter L Eckalbar, Jialing Liu. Abstract TP130: Transcriptome Analysis of Mononuclear Cell Responses After Ischemic Stroke in Type 2 Diabetic Mice. Stroke. 2019 Feb 1; 50(Suppl_1).
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    8. Matharu N, Rattanasopha S, Tamura S, Maliskova L, Wang Y, Bernard A, Hardin A, Eckalbar WL, Vaisse C, Ahituv N. CRISPR-mediated activation of a promoter or enhancer rescues obesity caused by haploinsufficiency. Science. 2019 01 18; 363(6424). PMID: 30545847.
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    9. Levin AM, Gui H, Hernandez-Pacheco N, Yang M, Xiao S, Yang JJ, Hochstadt S, Barczak AJ, Eckalbar WL, Rynkowski D, Samedy LA, Kwok PY, Pino-Yanes M, Erle DJ, Lanfear DE, Burchard EG, Williams LK. Integrative approach identifies corticosteroid response variant in diverse populations with asthma. J Allergy Clin Immunol. 2019 May; 143(5):1791-1802. PMID: 30367910.
      View in: PubMed
    10. Ricardo-Gonzalez RR, Van Dyken SJ, Schneider C, Lee J, Nussbaum JC, Liang HE, Vaka D, Eckalbar WL, Molofsky AB, Erle DJ, Locksley RM. Tissue signals imprint ILC2 identity with anticipatory function. Nat Immunol. 2018 10; 19(10):1093-1099. PMID: 30201992.
      View in: PubMed
    11. Mak ACY, White MJ, Eckalbar WL, Szpiech ZA, Oh SS, Pino-Yanes M, Hu D, Goddard P, Huntsman S, Galanter J, Wu AC, Himes BE, Germer S, Vogel JM, Bunting KL, Eng C, Salazar S, Keys KL, Liberto J, Nuckton TJ, Nguyen TA, Torgerson DG, Kwok PY, Levin AM, Celedón JC, Forno E, Hakonarson H, Sleiman PM, Dahlin A, Tantisira KG, Weiss ST, Serebrisky D, Brigino-Buenaventura E, Farber HJ, Meade K, Lenoir MA, Avila PC, Sen S, Thyne SM, Rodriguez-Cintron W, Winkler CA, Moreno-Estrada A, Sandoval K, Rodriguez-Santana JR, Kumar R, Williams LK, Ahituv N, Ziv E, Seibold MA, Darnell RB, Zaitlen N, Hernandez RD, Burchard EG. Whole-Genome Sequencing of Pharmacogenetic Drug Response in Racially Diverse Children with Asthma. Am J Respir Crit Care Med. 2018 06 15; 197(12):1552-1564. PMID: 29509491.
      View in: PubMed
    12. John C. Eckalbar, Walter L. Eckalbar. Complementarity between term-time forcing and delayed vaccination response in explaining irregular dynamics in childhood diseases. Ricerche di Matematica. 2018 Jun 1; 67(1):175-204.
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    13. Tollis M, Hutchins ED, Stapley J, Rupp SM, Eckalbar WL, Maayan I, Lasku E, Infante CR, Dennis SR, Robertson JA, May CM, Crusoe MR, Bermingham E, DeNardo DF, Hsieh ST, Kulathinal RJ, McMillan WO, Menke DB, Pratt SC, Rawls JA, Sanjur O, Wilson-Rawls J, Wilson Sayres MA, Fisher RE, Kusumi K. Comparative Genomics Reveals Accelerated Evolution in Conserved Pathways during the Diversification of Anole Lizards. Genome Biol Evol. 2018 02 01; 10(2):489-506. PMID: 29360978.
      View in: PubMed
    14. Ryu AH, Eckalbar WL, Kreimer A, Yosef N, Ahituv N. Use antibiotics in cell culture with caution: genome-wide identification of antibiotic-induced changes in gene expression and regulation. Sci Rep. 2017 08 08; 7(1):7533. PMID: 28790348.
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    15. Eckalbar JC, Eckalbar WL. Corrigendum to "Dynamics of an SIR model with vaccination dependent on past prevalence with high order distributed delay" [BioSystems 129 (2015) 50-65]. Biosystems. 2017 01; 151:53. PMID: 27939914.
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    16. Luizon MR, Eckalbar WL, Wang Y, Jones SL, Smith RP, Laurance M, Lin L, Gallins PJ, Etheridge AS, Wright F, Zhou Y, Molony C, Innocenti F, Yee SW, Giacomini KM, Ahituv N. Genomic Characterization of Metformin Hepatic Response. PLoS Genet. 2016 Nov; 12(11):e1006449. PMID: 27902686.
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    17. Hutchins ED, Eckalbar WL, Wolter JM, Mangone M, Kusumi K. Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis. BMC Genomics. 2016 05 05; 17:339. PMID: 27150582.
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    18. Booker BM, Friedrich T, Mason MK, VanderMeer JE, Zhao J, Eckalbar WL, Logan M, Illing N, Pollard KS, Ahituv N. Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus. PLoS Genet. 2016 Mar; 12(3):e1005738. PMID: 27019019.
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    19. Eckalbar WL, Schlebusch SA, Mason MK, Gill Z, Parker AV, Booker BM, Nishizaki S, Muswamba-Nday C, Terhune E, Nevonen KA, Makki N, Friedrich T, VanderMeer JE, Pollard KS, Carbone L, Wall JD, Illing N, Ahituv N. Transcriptomic and epigenomic characterization of the developing bat wing. Nat Genet. 2016 05; 48(5):528-36. PMID: 27019111.
      View in: PubMed
    20. Jorgenson E, Makki N, Shen L, Chen DC, Tian C, Eckalbar WL, Hinds D, Ahituv N, Avins A. A genome-wide association study identifies four novel susceptibility loci underlying inguinal hernia. Nat Commun. 2015 Dec 21; 6:10130. PMID: 26686553.
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    21. JOHN C. ECKALBAR, PETE TSOURNOS, WALTER L. ECKALBAR. DYNAMICS IN AN SIR MODEL WHEN VACCINATION DEMAND FOLLOWS PRIOR LEVELS OF DISEASE PREVALENCE. Advances in Complex Systems. 2015 Nov 1; 18(07n08):1550021.
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    22. Sharma S, Londono D, Eckalbar WL, Gao X, Zhang D, Mauldin K, Kou I, Takahashi A, Matsumoto M, Kamiya N, Murphy KK, Cornelia R, Herring JA, Burns D, Ahituv N, Ikegawa S, Gordon D, Wise CA. A PAX1 enhancer locus is associated with susceptibility to idiopathic scoliosis in females. Nat Commun. 2015 Mar 18; 6:6452. PMID: 25784220.
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    23. Eckalbar JC, Eckalbar WL. Dynamics of an SIR model with vaccination dependent on past prevalence with high-order distributed delay. Biosystems. 2015 Mar; 129:50-65. PMID: 25555542.
      View in: PubMed
    24. Smith RP, Eckalbar WL, Morrissey KM, Luizon MR, Hoffmann TJ, Sun X, Jones SL, Force Aldred S, Ramamoorthy A, Desta Z, Liu Y, Skaar TC, Trinklein ND, Giacomini KM, Ahituv N. Genome-wide discovery of drug-dependent human liver regulatory elements. PLoS Genet. 2014 Oct; 10(10):e1004648. PMID: 25275310.
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    25. Oksenberg N, Haliburton GD, Eckalbar WL, Oren I, Nishizaki S, Murphy K, Pollard KS, Birnbaum RY, Ahituv N. Genome-wide distribution of Auts2 binding localizes with active neurodevelopmental genes. Transl Psychiatry. 2014 Sep 02; 4:e431. PMID: 25180570.
      View in: PubMed
    26. Hutchins ED, Markov GJ, Eckalbar WL, George RM, King JM, Tokuyama MA, Geiger LA, Emmert N, Ammar MJ, Allen AN, Siniard AL, Corneveaux JJ, Fisher RE, Wade J, DeNardo DF, Rawls JA, Huentelman MJ, Wilson-Rawls J, Kusumi K. Transcriptomic analysis of tail regeneration in the lizard Anolis carolinensis reveals activation of conserved vertebrate developmental and repair mechanisms. PLoS One. 2014; 9(8):e105004. PMID: 25140675.
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    27. Kusumi K, May CM, Eckalbar WL. A large-scale view of the evolution of amniote development: insights from somitogenesis in reptiles. Curr Opin Genet Dev. 2013 Aug; 23(4):491-7. PMID: 23499412.
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    28. Eckalbar WL, Hutchins ED, Markov GJ, Allen AN, Corneveaux JJ, Lindblad-Toh K, Di Palma F, Alföldi J, Huentelman MJ, Kusumi K. Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes. BMC Genomics. 2013 Jan 23; 14:49. PMID: 23343042.
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    29. Eckalbar WL, Fisher RE, Rawls A, Kusumi K. Scoliosis and segmentation defects of the vertebrae. Wiley Interdiscip Rev Dev Biol. 2012 May-Jun; 1(3):401-23. PMID: 23801490.
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    30. Eckalbar WL, Lasku E, Infante CR, Elsey RM, Markov GJ, Allen AN, Corneveaux JJ, Losos JB, DeNardo DF, Huentelman MJ, Wilson-Rawls J, Rawls A, Kusumi K. Somitogenesis in the anole lizard and alligator reveals evolutionary convergence and divergence in the amniote segmentation clock. Dev Biol. 2012 Mar 01; 363(1):308-19. PMID: 22178152.
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    31. Walter Eckalbar, Eris Lasku, Carlos Infante, Dale DeNardo, Jonathan Losos, Alan Rawls, Jeanne Wilson-Rawls, Kenro Kusumi. Major shifts in the evolution of somitogenesis: The reptile Anolis carolinensis represents a fourth type of segmentation clock among vertebrates. Developmental Biology. 2011 Aug 1; 356(1):254.
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    32. John C. Eckalbar, Walter L. Eckalbar. Dynamics of an epidemic model with quadratic treatment. Nonlinear Analysis Real World Applications. 2011 Feb 1; 12(1):320-332.
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    33. Glenn J. Markov, Rajani George, Nataliya Emmert, Michael Ammar, Walter L. Eckalbar, Juli Wade, Dale DeNardo, Alan Rawls, Jeanne Wilson-Rawls, Kenro Kusumi. Developmental gene activation in tail regeneration in the lizard, Anolis carolinensis. Developmental Biology. 2010 Aug 1; 344(1):519-520.
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    34. Walter L. Eckalbar, Carlos Infante, Nataliya Emmert, Jonathan Losos, Alan Rawls, Jeanne Wilson-Rawls, Kenro Kusumi. Identification of a divergent notch pathway delta ligand in the segmentation clock of the reptile, Anolis carolinensis. Developmental Biology. 2010 Aug 1; 344(1):528.
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    35. Kenro Kusumi, Walter Eckalbar, Olivier Pourquié. Genetic Regulation of Somite and Early Spinal Patterning. The Genetics and Development of Scoliosis. 2010 Jan 1; 1-20.
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    36. Walter Eckalbar, Will Sewell, Allanceson Smith, Eric Huynh, Joshua Gibson, Jeanne Wilson-Rawls, Michael Caplan, Kenro Kusumi. How many genes are part of the oscillatory network regulating somitogenesis? Developmental analysis and mathematical modeling of genes identified in functional genomic screens. Developmental Biology. 2009 Jul 1; 331(2):466.
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